NYZ

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O	C2	doub	1.22Å	1.24Å
C2	N1	sing	1.33Å	1.37Å
C2	N3	sing	1.35Å	1.37Å
N1	C6	doub	1.33Å	1.34Å
N3	C4	sing	1.37Å	1.37Å
O2'	C2'	sing	1.43Å	1.42Å
C6	N6	sing	1.37Å	1.34Å
C6	C5	sing	1.42Å	1.42Å
C4	C5	doub	1.39Å	1.38Å	Aromatic
C4	N9	sing	1.36Å	1.37Å	Aromatic
C2'	C1'	sing	1.55Å	1.54Å
C2'	C3'	sing	1.55Å	1.53Å
C5	N7	sing	1.36Å	1.39Å	Aromatic
C1'	N9	sing	1.47Å	1.48Å
C1'	O4'	sing	1.44Å	1.42Å
N9	C8	sing	1.36Å	1.36Å	Aromatic
O3'	C3'	sing	1.43Å	1.42Å
C3'	C4'	sing	1.54Å	1.52Å
O4'	C4'	sing	1.44Å	1.44Å
N7	C8	doub	1.30Å	1.32Å	Aromatic
C4'	C5'	sing	1.53Å	1.51Å
C5'	O5'	sing	1.43Å	1.45Å
O5'	PA	sing	1.61Å	1.57Å
O2A	PA	doub	1.48Å	1.56Å
PA	O1A	sing	1.61Å	1.52Å
PA	C3A	sing	1.82Å	1.79Å
C3A	PB	sing	1.82Å	1.79Å
O1B	PB	doub	1.48Å	1.49Å
O2B	PB	sing	1.61Å	1.54Å
PB	O3B	sing	1.61Å	1.54Å
C8	H8	sing	1.08Å	1.08Å
O2B	H1	sing	0.97Å	0.95Å
O3B	H2	sing	0.97Å	0.95Å
O1A	H4	sing	0.97Å	0.95Å
C3A	H3A2	sing	1.09Å	1.10Å
C3A	H3A1	sing	1.09Å	1.10Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C4'	H4'	sing	1.09Å	1.10Å
C3'	H3'	sing	1.09Å	1.10Å
O3'	HO3'	sing	0.97Å	0.95Å
C2'	H2'	sing	1.09Å	1.10Å
O2'	HO2'	sing	0.97Å	0.95Å
C1'	H1'	sing	1.09Å	1.10Å
N6	H61	sing	0.97Å	1.00Å
N6	H62	sing	0.97Å	1.00Å
N3	H3	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O	C2	N1	121.8°	119.1°
O	C2	N3	118.4°	119.1°
N1	C2	N3	119.8°	121.8°
C2	N1	C6	120.5°	121.5°
C2	N3	C4	121.3°	119.9°
C2	N3	H3	119.4°	120.1°
N1	C6	N6	117.3°	120.3°
N1	C6	C5	120.5°	119.3°
N3	C4	C5	119.5°	119.0°
N3	C4	N9	134.0°	134.5°
C4	N3	H3	119.3°	120.0°
O2'	C2'	C1'	109.4°	110.9°
O2'	C2'	C3'	113.1°	110.9°
O2'	C2'	H2'	111.4°	110.8°
C2'	O2'	HO2'	109.5°	114.0°
N6	C6	C5	122.2°	120.3°
C6	N6	H61	120.0°	120.0°
C6	N6	H62	120.0°	120.0°
C6	C5	C4	118.4°	118.5°
C6	C5	N7	132.0°	134.3°
C5	C4	N9	106.5°	106.4°
C4	C5	N7	109.6°	107.2°
C4	N9	C1'	125.8°	126.3°
C4	N9	C8	106.2°	107.5°
C1'	C2'	C3'	103.0°	102.0°
C2'	C1'	N9	114.3°	110.6°
C2'	C1'	O4'	107.8°	103.5°
C1'	C2'	H2'	109.8°	111.0°
C2'	C1'	H1'	107.7°	110.6°
C2'	C3'	O3'	113.7°	110.6°
C2'	C3'	C4'	102.4°	104.2°
C2'	C3'	H3'	109.1°	110.5°
C3'	C2'	H2'	109.9°	110.9°
C5	N7	C8	104.8°	109.2°
N9	C1'	O4'	109.4°	110.7°
C1'	N9	C8	127.9°	126.2°
N9	C1'	H1'	108.4°	110.5°
C1'	O4'	C4'	109.1°	106.9°
O4'	C1'	H1'	109.2°	110.7°
N9	C8	N7	112.9°	109.6°
N9	C8	H8	123.6°	125.2°
O3'	C3'	C4'	111.5°	110.5°
O3'	C3'	H3'	110.6°	110.4°
C3'	O3'	HO3'	109.5°	114.0°
C3'	C4'	O4'	104.2°	107.5°
C3'	C4'	C5'	114.2°	109.9°
C3'	C4'	H4'	109.1°	109.9°
C4'	C3'	H3'	109.2°	110.5°
O4'	C4'	C5'	109.9°	109.9°
O4'	C4'	H4'	110.1°	109.9°
N7	C8	H8	123.6°	125.2°
C4'	C5'	O5'	112.1°	109.5°
C4'	C5'	H5'1	108.8°	109.4°
C4'	C5'	H5'2	108.8°	109.5°
C5'	C4'	H4'	109.2°	109.8°
C5'	O5'	PA	122.3°	123.0°
O5'	C5'	H5'1	108.8°	109.4°
O5'	C5'	H5'2	108.8°	109.5°
O5'	PA	O2A	109.8°	109.5°
O5'	PA	O1A	111.5°	109.5°
O5'	PA	C3A	101.3°	109.5°
O2A	PA	O1A	108.7°	109.5°
O2A	PA	C3A	103.5°	109.5°
O1A	PA	C3A	121.4°	109.4°
PA	O1A	H4	109.5°	114.0°
PA	C3A	PB	115.6°	109.5°
PA	C3A	H3A2	107.9°	109.5°
PA	C3A	H3A1	107.9°	109.5°
C3A	PB	O1B	113.3°	109.4°
C3A	PB	O2B	108.9°	109.5°
C3A	PB	O3B	100.8°	109.5°
PB	C3A	H3A2	107.9°	109.4°
PB	C3A	H3A1	107.9°	109.4°
O1B	PB	O2B	112.8°	109.5°
O1B	PB	O3B	113.7°	109.5°
O2B	PB	O3B	106.6°	109.5°
PB	O2B	H1	109.5°	114.0°
PB	O3B	H2	109.5°	114.0°
H3A2	C3A	H3A1	109.4°	109.5°
H5'1	C5'	H5'2	109.5°	109.5°
H61	N6	H62	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O	C2	N1	N3	179.4°	179.8°
O	C2	N1	C6	179.0°	180.0°
O	C2	N3	C4	178.8°	179.9°
O	C2	N3	H3	1.2°	0.2°
N1	C2	N3	C4	1.8°	0.3°
C2	N1	C6	N6	179.5°	180.0°
C2	N1	C6	C5	1.9°	0.1°
N1	C2	N3	H3	178.2°	180.0°
N3	C2	N1	C6	0.4°	0.2°
C2	N3	C4	H3	180.0°	179.7°
C2	N3	C4	C5	2.3°	0.1°
C2	N3	C4	N9	179.8°	179.9°
N1	C6	N6	C5	178.5°	179.9°
N1	C6	C5	C4	1.4°	0.2°
N1	C6	C5	N7	179.4°	180.0°
N1	C6	N6	H61	0.0°	179.9°
N1	C6	N6	H62	180.0°	0.1°
N3	C4	C5	C6	0.7°	0.1°
N3	C4	C5	N9	178.5°	180.0°
N3	C4	C5	N7	178.7°	180.0°
N3	C4	N9	C1'	2.0°	0.2°
N3	C4	N9	C8	177.8°	179.9°
O2'	C2'	C1'	C3'	120.5°	118.2°
O2'	C2'	C1'	H2'	122.6°	123.6°
O2'	C2'	C3'	H2'	125.2°	123.6°
O2'	C2'	C1'	N9	129.6°	86.2°
O2'	C2'	C1'	O4'	108.6°	155.2°
O2'	C2'	C3'	O3'	31.8°	20.3°
O2'	C2'	C3'	C4'	88.7°	139.1°
O2'	C2'	C3'	H3'	155.7°	102.2°
O2'	C2'	C1'	H1'	9.1°	36.6°
N6	C6	C5	C4	179.8°	179.9°
N6	C6	C5	N7	0.9°	0.1°
C6	N6	H61	H62	180.0°	180.0°
C6	C5	C4	N7	179.4°	179.8°
C6	C5	C4	N9	179.2°	179.9°
C6	C5	N7	C8	178.5°	180.0°
C5	C6	N6	H61	178.5°	0.0°
C5	C6	N6	H62	1.5°	180.0°
C5	C4	N9	C1'	179.9°	179.8°
C5	C4	N9	C8	0.4°	0.1°
C4	C5	N7	C8	0.8°	0.2°
C5	C4	N3	H3	177.7°	179.9°
C4	N9	C1'	C2'	91.9°	85.0°
N9	C4	C5	N7	0.3°	0.0°
C4	N9	C1'	C8	179.7°	179.9°
C4	N9	C1'	O4'	147.1°	160.9°
C4	N9	C8	N7	0.9°	0.2°
C4	N9	C8	H8	179.1°	180.0°
C4	N9	C1'	H1'	28.2°	37.8°
N9	C4	N3	H3	0.2°	0.1°
C1'	C2'	C3'	H2'	116.9°	118.2°
C2'	C1'	N9	O4'	121.0°	114.1°
C2'	C1'	N9	H1'	120.0°	122.8°
C2'	C1'	O4'	H1'	116.7°	118.6°
C2'	C1'	N9	C8	88.4°	95.1°
C1'	C2'	C3'	O3'	149.7°	97.9°
C1'	C2'	C3'	C4'	29.2°	20.9°
C2'	C1'	O4'	C4'	11.7°	39.9°
C1'	C2'	C3'	H3'	86.4°	139.6°
C1'	C2'	O2'	HO2'	180.0°	180.0°
C3'	C2'	C1'	N9	109.9°	155.6°
C3'	C2'	C1'	O4'	11.9°	37.0°
C2'	C3'	O3'	C4'	115.2°	114.9°
C2'	C3'	O3'	H3'	123.1°	122.6°
C2'	C3'	C4'	H3'	115.5°	118.7°
C2'	C3'	C4'	O4'	36.9°	1.9°
C2'	C3'	C4'	C5'	156.9°	121.5°
C2'	C3'	C4'	H4'	80.7°	117.6°
C2'	C3'	O3'	HO3'	180.0°	65.1°
C3'	C2'	O2'	HO2'	65.9°	67.3°
C3'	C2'	C1'	H1'	129.6°	81.7°
C5	N7	C8	N9	1.1°	0.2°
C5	N7	C8	H8	178.9°	180.0°
N9	C1'	O4'	H1'	118.5°	123.0°
N9	C1'	O4'	C4'	136.5°	158.4°
C1'	N9	C8	N7	179.3°	179.7°
C1'	N9	C8	H8	0.7°	0.0°
N9	C1'	C2'	H2'	7.0°	37.4°
O4'	C1'	N9	C8	32.6°	19.0°
C1'	O4'	C4'	C3'	30.8°	26.4°
C1'	O4'	C4'	C5'	153.5°	146.0°
C1'	O4'	C4'	H4'	86.0°	93.1°
O4'	C1'	C2'	H2'	128.9°	81.2°
N9	C8	N7	H8	180.0°	179.7°
C8	N9	C1'	H1'	151.5°	142.1°
O3'	C3'	C4'	H3'	122.5°	122.5°
O3'	C3'	C4'	O4'	158.9°	120.8°
O3'	C3'	C4'	C5'	81.1°	119.7°
O3'	C3'	C4'	H4'	41.3°	1.3°
O3'	C3'	C2'	H2'	93.4°	143.9°
C3'	C4'	O4'	C5'	122.7°	119.6°
C3'	C4'	O4'	H4'	116.8°	119.5°
C3'	C4'	C5'	H4'	122.4°	121.0°
C3'	C4'	C5'	O5'	170.7°	175.3°
C3'	C4'	C5'	H5'1	50.3°	64.8°
C3'	C4'	C5'	H5'2	68.9°	55.3°
C4'	C3'	O3'	HO3'	64.8°	179.9°
C4'	C3'	C2'	H2'	146.1°	97.3°
O4'	C4'	C5'	H4'	121.0°	121.0°
O4'	C4'	C5'	O5'	72.6°	66.6°
O4'	C4'	C5'	H5'1	167.0°	53.3°
O4'	C4'	C5'	H5'2	47.8°	173.3°
O4'	C4'	C3'	H3'	78.6°	116.8°
C4'	O4'	C1'	H1'	105.0°	78.6°
C4'	C5'	O5'	H5'1	120.4°	119.9°
C4'	C5'	O5'	H5'2	120.4°	120.1°
C4'	C5'	O5'	PA	156.2°	180.0°
C4'	C5'	H5'1	H5'2	118.8°	120.0°
C5'	C4'	C3'	H3'	41.3°	2.8°
C5'	O5'	PA	O2A	61.6°	55.1°
C5'	O5'	PA	O1A	177.9°	65.0°
C5'	O5'	PA	C3A	47.4°	175.0°
O5'	C5'	H5'1	H5'2	118.8°	120.0°
O5'	C5'	C4'	H4'	48.4°	54.3°
O5'	PA	O2A	O1A	122.2°	120.0°
O5'	PA	O2A	C3A	107.5°	120.0°
O5'	PA	O1A	C3A	119.2°	120.0°
O5'	PA	C3A	PB	70.9°	180.0°
O5'	PA	O1A	H4	121.2°	60.0°
O5'	PA	C3A	H3A2	168.2°	60.0°
O5'	PA	C3A	H3A1	50.0°	60.0°
PA	O5'	C5'	H5'1	35.8°	60.0°
PA	O5'	C5'	H5'2	83.5°	60.0°
O2A	PA	O1A	C3A	119.7°	120.0°
O2A	PA	C3A	PB	175.4°	60.0°
O2A	PA	O1A	H4	0.0°	180.0°
O2A	PA	C3A	H3A2	54.5°	180.0°
O2A	PA	C3A	H3A1	63.7°	60.0°
O1A	PA	C3A	PB	53.2°	60.0°
O1A	PA	C3A	H3A2	67.7°	60.0°
O1A	PA	C3A	H3A1	174.1°	180.0°
PA	C3A	PB	H3A2	120.9°	120.0°
PA	C3A	PB	H3A1	120.9°	120.0°
PA	C3A	PB	O1B	111.5°	60.0°
PA	C3A	PB	O2B	14.9°	60.0°
PA	C3A	PB	O3B	126.7°	180.0°
C3A	PA	O1A	H4	119.7°	60.0°
PA	C3A	H3A2	H3A1	117.2°	120.1°
C3A	PB	O1B	O2B	124.3°	120.0°
C3A	PB	O1B	O3B	114.3°	120.0°
C3A	PB	O2B	O3B	108.0°	120.1°
C3A	PB	O2B	H1	126.7°	60.1°
C3A	PB	O3B	H2	121.5°	180.0°
PB	C3A	H3A2	H3A1	117.2°	119.9°
O1B	PB	O2B	O3B	125.4°	120.0°
O1B	PB	O2B	H1	0.0°	180.0°
O1B	PB	O3B	H2	0.0°	60.0°
O1B	PB	C3A	H3A2	127.6°	180.0°
O1B	PB	C3A	H3A1	9.4°	60.1°
O2B	PB	O3B	H2	124.8°	59.9°
O2B	PB	C3A	H3A2	106.0°	60.0°
O2B	PB	C3A	H3A1	135.8°	180.0°
O3B	PB	O2B	H1	125.4°	60.0°
O3B	PB	C3A	H3A2	5.8°	60.0°
O3B	PB	C3A	H3A1	112.4°	59.9°
H5'1	C5'	C4'	H4'	72.0°	174.3°
H5'2	C5'	C4'	H4'	168.7°	65.7°
H4'	C4'	C3'	H3'	163.8°	123.7°
H3'	C3'	O3'	HO3'	56.9°	57.5°
H3'	C3'	C2'	H2'	30.5°	21.4°
H2'	C2'	O2'	HO2'	58.4°	56.3°
H2'	C2'	C1'	H1'	113.4°	160.2°

Release date:	2020-02-19
Definition date:	2020-01-13
Last modified:	2020-02-14
Release status:	REL
Processing site:	EBI
Derived from:	6TW0