NR1
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N1' | C2' | sing | 1.49Å | 1.49Å | |
| N1' | C6' | sing | 1.49Å | 1.48Å | |
| C2' | C3' | sing | 1.54Å | 1.51Å | |
| C6' | C4' | sing | 1.54Å | 1.53Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.54Å | 1.53Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| OP2 | P | doub | 1.48Å | 1.48Å | |
| O5' | C5' | sing | 1.43Å | 1.44Å | |
| O5' | P | sing | 1.61Å | 1.59Å | |
| P | OP1 | sing | 1.61Å | 1.49Å | |
| P | O1 | sing | 1.61Å | 1.60Å | |
| OP1 | H1 | sing | 0.97Å | 0.95Å | |
| C2' | H2'' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| C6' | H6'1 | sing | 1.09Å | 1.10Å | |
| C6' | H6'2 | sing | 1.09Å | 1.10Å | |
| N1' | H1'2 | sing | 1.01Å | 1.00Å | |
| O3' | H2 | sing | 0.97Å | 0.95Å | |
| O1 | H3 | sing | 0.97Å | 0.95Å | |
| N1' | H1'1 | sing | 1.01Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C2' | N1' | C6' | 107.1° | 104.2° |
| N1' | C2' | C3' | 104.9° | 104.7° |
| N1' | C2' | H2'' | 110.6° | 110.4° |
| N1' | C2' | H2' | 110.6° | 110.5° |
| C2' | N1' | H1'2 | 110.1° | 110.5° |
| C2' | N1' | H1'1 | 110.1° | 110.4° |
| N1' | C6' | C4' | 104.3° | 104.6° |
| N1' | C6' | H6'1 | 110.7° | 110.4° |
| N1' | C6' | H6'2 | 110.7° | 110.5° |
| C6' | N1' | H1'2 | 110.1° | 110.5° |
| C6' | N1' | H1'1 | 110.1° | 110.5° |
| C2' | C3' | O3' | 109.5° | 110.3° |
| C2' | C3' | C4' | 106.0° | 105.0° |
| C3' | C2' | H2'' | 110.6° | 110.4° |
| C3' | C2' | H2' | 110.6° | 110.4° |
| C2' | C3' | H3' | 110.1° | 110.3° |
| C6' | C4' | C3' | 106.7° | 105.1° |
| C6' | C4' | C5' | 109.0° | 110.3° |
| C6' | C4' | H4' | 108.8° | 110.4° |
| C4' | C6' | H6'1 | 110.7° | 110.4° |
| C4' | C6' | H6'2 | 110.7° | 110.4° |
| O3' | C3' | C4' | 110.0° | 110.3° |
| O3' | C3' | H3' | 111.3° | 110.4° |
| C3' | O3' | H2 | 109.5° | 114.0° |
| C3' | C4' | C5' | 114.4° | 110.3° |
| C3' | C4' | H4' | 108.8° | 110.3° |
| C4' | C3' | H3' | 109.8° | 110.3° |
| C4' | C5' | O5' | 110.5° | 109.4° |
| C4' | C5' | H5' | 109.2° | 109.5° |
| C4' | C5' | H5'' | 109.2° | 109.5° |
| C5' | C4' | H4' | 109.1° | 110.3° |
| OP2 | P | O5' | 108.3° | 109.5° |
| OP2 | P | OP1 | 119.3° | 109.4° |
| OP2 | P | O1 | 111.0° | 109.5° |
| C5' | O5' | P | 120.9° | 123.0° |
| O5' | C5' | H5' | 109.2° | 109.5° |
| O5' | C5' | H5'' | 109.2° | 109.5° |
| O5' | P | OP1 | 107.0° | 109.5° |
| O5' | P | O1 | 100.5° | 109.5° |
| OP1 | P | O1 | 109.0° | 109.4° |
| P | OP1 | H1 | 109.5° | 114.0° |
| P | O1 | H3 | 109.5° | 114.0° |
| H2'' | C2' | H2' | 109.5° | 110.3° |
| H5' | C5' | H5'' | 109.5° | 109.5° |
| H6'1 | C6' | H6'2 | 109.5° | 110.3° |
| H1'2 | N1' | H1'1 | 109.5° | 110.6° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C2' | N1' | C6' | H1'2 | 119.6° | 118.7° |
| C2' | N1' | C6' | H1'1 | 119.7° | 118.6° |
| N1' | C2' | C3' | H2'' | 119.3° | 118.8° |
| N1' | C2' | C3' | H2' | 119.2° | 118.9° |
| C2' | N1' | C6' | C4' | 31.9° | 39.5° |
| N1' | C2' | C3' | O3' | 97.5° | 95.0° |
| N1' | C2' | C3' | C4' | 21.1° | 23.9° |
| N1' | C2' | H2'' | H2' | 122.1° | 122.4° |
| N1' | C2' | C3' | H3' | 139.8° | 142.7° |
| C2' | N1' | C6' | H6'1 | 87.3° | 158.3° |
| C2' | N1' | C6' | H6'2 | 151.0° | 79.4° |
| C2' | N1' | H1'2 | H1'1 | 121.1° | 122.6° |
| C6' | N1' | C2' | C3' | 33.4° | 39.5° |
| N1' | C6' | C4' | H6'1 | 119.2° | 118.8° |
| N1' | C6' | C4' | H6'2 | 119.2° | 119.0° |
| N1' | C6' | C4' | C3' | 17.9° | 23.9° |
| N1' | C6' | C4' | C5' | 141.8° | 142.7° |
| C6' | N1' | C2' | H2'' | 152.7° | 79.3° |
| C6' | N1' | C2' | H2' | 85.9° | 158.3° |
| N1' | C6' | C4' | H4' | 99.3° | 95.0° |
| N1' | C6' | H6'1 | H6'2 | 122.4° | 122.5° |
| C6' | N1' | H1'2 | H1'1 | 121.1° | 122.7° |
| C2' | C3' | C4' | C6' | 1.9° | 0.0° |
| C2' | C3' | O3' | C4' | 116.1° | 115.6° |
| C2' | C3' | O3' | H3' | 121.9° | 122.2° |
| C2' | C3' | C4' | H3' | 118.9° | 118.9° |
| C2' | C3' | C4' | C5' | 118.6° | 118.9° |
| C3' | C2' | H2'' | H2' | 122.1° | 122.3° |
| C2' | C3' | C4' | H4' | 119.2° | 119.0° |
| C3' | C2' | N1' | H1'2 | 153.0° | 158.2° |
| C2' | C3' | O3' | H2 | 180.0° | 61.5° |
| C3' | C2' | N1' | H1'1 | 86.2° | 79.2° |
| C6' | C4' | C3' | O3' | 116.4° | 118.9° |
| C6' | C4' | C3' | C5' | 120.5° | 118.9° |
| C6' | C4' | C3' | H4' | 117.2° | 119.0° |
| C6' | C4' | C5' | H4' | 118.7° | 122.3° |
| C6' | C4' | C5' | O5' | 53.6° | 68.0° |
| C6' | C4' | C5' | H5' | 173.7° | 52.1° |
| C6' | C4' | C5' | H5'' | 66.6° | 172.1° |
| C6' | C4' | C3' | H3' | 120.8° | 118.9° |
| C4' | C6' | H6'1 | H6'2 | 122.4° | 122.3° |
| C4' | C6' | N1' | H1'2 | 151.5° | 158.1° |
| C4' | C6' | N1' | H1'1 | 87.8° | 79.1° |
| O3' | C3' | C4' | H3' | 122.8° | 122.2° |
| O3' | C3' | C4' | C5' | 123.1° | 122.2° |
| O3' | C3' | C2' | H2'' | 21.7° | 146.2° |
| O3' | C3' | C2' | H2' | 143.2° | 23.9° |
| O3' | C3' | C4' | H4' | 0.9° | 0.1° |
| C3' | C4' | C5' | H4' | 122.1° | 122.1° |
| C3' | C4' | C5' | O5' | 172.8° | 176.4° |
| C4' | C3' | C2' | H2'' | 140.4° | 94.9° |
| C4' | C3' | C2' | H2' | 98.1° | 142.8° |
| C3' | C4' | C5' | H5' | 67.1° | 63.6° |
| C3' | C4' | C5' | H5'' | 52.6° | 56.4° |
| C3' | C4' | C6' | H6'1 | 101.2° | 142.6° |
| C3' | C4' | C6' | H6'2 | 137.1° | 95.1° |
| C4' | C3' | O3' | H2 | 63.9° | 177.1° |
| C4' | C5' | O5' | H5' | 120.2° | 120.0° |
| C4' | C5' | O5' | H5'' | 120.1° | 119.9° |
| C4' | C5' | O5' | P | 89.3° | 180.0° |
| C4' | C5' | H5' | H5'' | 119.5° | 120.0° |
| C5' | C4' | C3' | H3' | 0.3° | 0.0° |
| C5' | C4' | C6' | H6'1 | 22.7° | 98.5° |
| C5' | C4' | C6' | H6'2 | 99.0° | 23.8° |
| OP2 | P | O5' | C5' | 88.3° | 55.0° |
| OP2 | P | O5' | OP1 | 129.7° | 120.0° |
| OP2 | P | O5' | O1 | 116.5° | 120.0° |
| OP2 | P | OP1 | O1 | 128.9° | 120.0° |
| OP2 | P | OP1 | H1 | 0.0° | 180.0° |
| OP2 | P | O1 | H3 | 0.0° | 59.9° |
| C5' | O5' | P | OP1 | 142.0° | 65.0° |
| C5' | O5' | P | O1 | 28.2° | 175.0° |
| O5' | C5' | H5' | H5'' | 119.6° | 120.0° |
| O5' | C5' | C4' | H4' | 65.1° | 54.3° |
| O5' | P | OP1 | O1 | 107.9° | 120.0° |
| O5' | P | OP1 | H1 | 123.2° | 60.0° |
| P | O5' | C5' | H5' | 30.9° | 60.0° |
| P | O5' | C5' | H5'' | 150.6° | 60.0° |
| O5' | P | O1 | H3 | 114.4° | 180.0° |
| OP1 | P | O1 | H3 | 133.4° | 60.0° |
| O1 | P | OP1 | H1 | 128.9° | 60.0° |
| H2'' | C2' | C3' | H3' | 100.9° | 23.9° |
| H2'' | C2' | N1' | H1'2 | 87.7° | 39.3° |
| H2'' | C2' | N1' | H1'1 | 33.1° | 162.0° |
| H2' | C2' | C3' | H3' | 20.6° | 98.3° |
| H2' | C2' | N1' | H1'2 | 33.7° | 83.0° |
| H2' | C2' | N1' | H1'1 | 154.5° | 39.7° |
| H5' | C5' | C4' | H4' | 55.0° | 174.3° |
| H5'' | C5' | C4' | H4' | 174.7° | 65.6° |
| H4' | C4' | C3' | H3' | 121.9° | 122.1° |
| H4' | C4' | C6' | H6'1 | 141.5° | 23.7° |
| H4' | C4' | C6' | H6'2 | 19.9° | 146.0° |
| H3' | C3' | O3' | H2 | 58.1° | 60.7° |
| H6'1 | C6' | N1' | H1'2 | 32.3° | 83.1° |
| H6'1 | C6' | N1' | H1'1 | 153.1° | 39.7° |
| H6'2 | C6' | N1' | H1'2 | 89.3° | 39.2° |
| H6'2 | C6' | N1' | H1'1 | 31.4° | 162.0° |
