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N2G

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
PO1Psing1.61Å1.48Å
PO2Pdoub1.48Å1.48Å
PO3Psing1.61Å21.72Å
PO5'sing1.61Å1.60Å
O5'CANsing1.43Å1.43Å
CAZCAKsing1.41Å1.39ÅAromatic
CAZCAYdoub1.42Å1.39ÅAromatic
CAZCAVsing1.41Å1.40ÅAromatic
CAKCAFdoub1.36Å1.39ÅAromatic
CAFCAEsing1.39Å1.39ÅAromatic
CAECAIdoub1.36Å1.39ÅAromatic
CAICAYsing1.40Å1.39ÅAromatic
CAYCAJsing1.41Å1.39ÅAromatic
CAJCAGdoub1.36Å1.39ÅAromatic
CAGCAHsing1.39Å1.40ÅAromatic
CAHCAVdoub1.36Å1.38ÅAromatic
CAVCAMsing1.51Å1.53Å
CAMN2sing1.46Å1.46Å
N2C2sing1.37Å1.34Å
C2N1sing1.36Å1.40Å
C2N3doub1.31Å1.33Å
N1C6sing1.35Å1.40Å
C6O6doub1.22Å1.23Å
C6C5sing1.41Å1.38Å
N3C4sing1.34Å1.35Å
C4C5doub1.40Å1.39ÅAromatic
C4N9sing1.37Å1.32ÅAromatic
C5N7sing1.36Å1.34ÅAromatic
N7C8doub1.30Å1.33ÅAromatic
C8N9sing1.36Å1.33ÅAromatic
N9CBEsing1.47Å1.49Å
CBEOAUsing1.45Å1.43Å
CBECAOsing1.54Å1.53Å
OAUCBDsing1.44Å1.43Å
CAOCBCsing1.55Å1.53Å
CBCCBDsing1.54Å1.53Å
CBCO3'sing1.43Å1.43Å
CBDCANsing1.53Å1.53Å
O1PH1Psing0.97Å0.95Å
CANHAN1sing1.09Å1.10Å
CANHAN2sing1.09Å1.10Å
CAKHAKsing1.08Å1.08Å
CAFHAFsing1.08Å1.08Å
CAEHAEsing1.08Å1.08Å
CAIHAIsing1.08Å1.08Å
CAJHAJsing1.08Å1.08Å
CAGHAGsing1.08Å1.08Å
CAHHAHsing1.08Å1.08Å
CAMHAM1sing1.09Å1.10Å
CAMHAM2sing1.09Å1.10Å
N2H2sing0.97Å1.00Å
N1H1sing0.97Å1.00Å
C8H8sing1.08Å1.08Å
CBEHBEsing1.09Å1.10Å
CAOHAO1sing1.09Å1.10Å
CAOHAO2sing1.09Å1.10Å
CBDHBDsing1.09Å1.10Å
CBCHBCsing1.09Å1.10Å
O3'H3'sing0.97Å0.95Å
O3PH3Psing0.97Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O1PPO2P118.4°109.4°
O1PPO3P117.0°109.5°
O1PPO5'110.9°109.5°
PO1PH1P109.5°114.0°
O2PPO3P46.5°109.5°
O2PPO5'109.4°109.5°
O3PPO5'132.1°109.5°
PO3PH3P90.0°114.0°
PO5'CAN115.2°122.9°
O5'CANCBD110.8°109.4°
O5'CANHAN1109.0°109.5°
O5'CANHAN2108.7°109.5°
CAKCAZCAY119.4°119.4°
CAKCAZCAV120.2°121.3°
CAZCAKCAF120.7°119.7°
CAZCAKHAK119.6°120.2°
CAYCAZCAV120.4°119.3°
CAZCAYCAI120.2°119.3°
CAZCAYCAJ120.3°119.4°
CAZCAVCAH119.0°119.6°
CAZCAVCAM123.3°120.1°
CAKCAFCAE119.7°120.9°
CAFCAKHAK119.6°120.2°
CAKCAFHAF120.1°119.5°
CAFCAECAI119.9°121.0°
CAECAFHAF120.1°119.5°
CAFCAEHAE120.1°119.5°
CAECAICAY120.0°119.7°
CAICAEHAE120.0°119.6°
CAECAIHAI120.0°120.2°
CAICAYCAJ119.5°121.3°
CAYCAIHAI120.0°120.1°
CAYCAJCAG119.5°119.7°
CAYCAJHAJ120.2°120.2°
CAJCAGCAH120.0°121.0°
CAGCAJHAJ120.2°120.2°
CAJCAGHAG120.0°119.5°
CAGCAHCAV120.8°121.0°
CAHCAGHAG120.0°119.5°
CAGCAHHAH119.6°119.5°
CAHCAVCAM117.7°120.2°
CAVCAHHAH119.6°119.5°
CAVCAMN2106.7°109.5°
CAVCAMHAM1110.4°109.4°
CAVCAMHAM2111.1°109.4°
CAMN2C2125.1°120.0°
N2CAMHAM1110.4°109.5°
N2CAMHAM2111.0°109.5°
CAMN2H2117.4°120.0°
N2C2N1118.8°119.0°
N2C2N3117.3°119.0°
C2N2H2117.4°120.0°
N1C2N3123.9°122.0°
C2N1C6123.8°120.3°
C2N1H1118.1°119.9°
C2N3C4111.4°121.1°
N1C6O6119.7°120.8°
N1C6C5112.3°118.3°
C6N1H1118.1°119.8°
O6C6C5128.0°120.8°
C6C5C4119.8°118.6°
C6C5N7130.4°134.1°
N3C4C5128.8°119.7°
N3C4N9124.6°134.2°
C5C4N9106.6°106.1°
C4C5N7109.8°107.2°
C4N9C8107.0°107.5°
C4N9CBE125.3°126.2°
C5N7C8103.9°109.3°
N7C8N9112.7°109.8°
N7C8H8123.6°125.1°
C8N9CBE127.7°126.3°
N9C8H8123.6°125.1°
N9CBEOAU109.8°110.4°
N9CBECAO117.4°110.4°
N9CBEHBE102.6°110.4°
OAUCBECAO105.7°104.8°
CBEOAUCBD105.6°105.2°
OAUCBEHBE114.9°110.3°
CBECAOCBC103.1°104.1°
CAOCBEHBE106.9°110.4°
CBECAOHAO1111.6°110.5°
CBECAOHAO2113.0°110.5°
OAUCBDCBC100.6°104.9°
OAUCBDCAN113.1°110.3°
OAUCBDHBD114.2°110.3°
CAOCBCCBD102.2°104.0°
CAOCBCO3'111.4°110.5°
CBCCAOHAO1111.6°110.5°
CBCCAOHAO2113.0°110.5°
CAOCBCHBC112.9°110.5°
CBDCBCO3'109.4°110.5°
CBCCBDCAN112.9°110.4°
CBCCBDHBD114.4°110.4°
CBDCBCHBC114.9°110.5°
O3'CBCHBC106.2°110.6°
CBCO3'H3'109.5°114.1°
CBDCANHAN1109.1°109.5°
CBDCANHAN2108.8°109.4°
CANCBDHBD102.2°110.4°
HAN1CANHAN2110.5°109.6°
HAM1CAMHAM2107.3°109.5°
HAO1CAOHAO2104.7°110.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1PPO2PO3P101.4°120.0°
O1PPO2PO5'128.4°120.0°
O1PPO3PO5'179.2°120.0°
O1PPO5'CAN158.2°175.0°
O1PPO3PH3P90.0°60.0°
O2PPO3PO5'76.1°120.0°
O2PPO5'CAN69.3°55.1°
O2PPO1PH1P72.2°60.0°
O2PPO3PH3P90.0°179.9°
O3PPO5'CAN21.1°65.0°
O3PPO1PH1P125.2°60.0°
PO5'CANCBD141.7°179.9°
O5'PO1PH1P55.5°180.0°
PO5'CANHAN198.4°60.1°
PO5'CANHAN222.2°60.0°
O5'PO3PH3P90.0°60.1°
O5'CANCBDOAU76.3°66.4°
O5'CANCBDCBC37.1°178.2°
O5'CANCBDHAN1120.0°120.0°
O5'CANCBDHAN2119.4°120.0°
O5'CANHAN1HAN2119.4°120.1°
O5'CANCBDHBD160.5°55.8°
CAKCAZCAYCAV179.9°179.8°
CAZCAKCAFHAK180.0°179.9°
CAZCAKCAFCAE0.1°0.0°
CAKCAZCAYCAI0.2°0.1°
CAKCAZCAYCAJ179.8°180.0°
CAKCAZCAVCAH179.9°179.7°
CAKCAZCAVCAM0.1°0.0°
CAZCAKCAFHAF180.0°180.0°
CAYCAZCAKCAF0.1°0.1°
CAZCAYCAICAE0.1°0.0°
CAZCAYCAICAJ180.0°179.9°
CAZCAYCAJCAG0.1°0.1°
CAYCAZCAVCAH0.0°0.5°
CAYCAZCAVCAM180.0°179.8°
CAYCAZCAKHAK179.9°180.0°
CAZCAYCAIHAI179.9°180.0°
CAZCAYCAJHAJ179.9°180.0°
CAVCAZCAKCAF179.9°179.7°
CAVCAZCAYCAI180.0°179.7°
CAVCAZCAYCAJ0.1°0.2°
CAZCAVCAHCAG0.1°0.6°
CAZCAVCAHCAM180.0°179.6°
CAZCAVCAMN22.6°80.0°
CAVCAZCAKHAK0.1°0.2°
CAZCAVCAHHAH179.8°179.7°
CAZCAVCAMHAM1117.4°160.0°
CAZCAVCAMHAM2123.7°40.0°
CAKCAFCAEHAF180.0°180.0°
CAKCAFCAECAI0.1°0.0°
CAKCAFCAEHAE179.9°180.0°
CAFCAECAIHAE180.0°180.0°
CAFCAECAICAY0.0°0.0°
CAECAFCAKHAK179.9°180.0°
CAFCAECAIHAI180.0°179.9°
CAECAICAYHAI180.0°180.0°
CAECAICAYCAJ179.8°180.0°
CAICAECAFHAF179.9°180.0°
CAICAYCAJCAG180.0°180.0°
CAYCAICAEHAE180.0°180.0°
CAICAYCAJHAJ0.0°0.1°
CAYCAJCAGHAJ180.0°179.9°
CAYCAJCAGCAH0.0°0.0°
CAJCAYCAIHAI0.1°0.1°
CAYCAJCAGHAG179.9°179.9°
CAJCAGCAHHAG180.0°179.9°
CAJCAGCAHCAV0.1°0.3°
CAJCAGCAHHAH179.8°180.0°
CAGCAHCAVHAH180.0°179.7°
CAGCAHCAVCAM179.9°179.8°
CAHCAGCAJHAJ180.0°180.0°
CAHCAVCAMN2177.4°99.7°
CAVCAHCAGHAG179.8°179.7°
CAHCAVCAMHAM162.6°20.4°
CAHCAVCAMHAM256.3°140.3°
CAVCAMN2HAM1120.0°120.0°
CAVCAMN2HAM2121.1°120.0°
CAVCAMN2C2172.7°180.0°
CAMCAVCAHHAH0.1°0.1°
CAVCAMHAM1HAM2121.2°119.9°
CAVCAMN2H27.3°0.0°
CAMN2C2H2180.0°179.9°
CAMN2C2N11.6°180.0°
CAMN2C2N3179.2°0.2°
N2CAMHAM1HAM2121.1°120.0°
N2C2N1N3179.1°179.8°
N2C2N1C6179.3°180.0°
N2C2N3C4179.5°180.0°
C2N2CAMHAM152.7°60.0°
C2N2CAMHAM266.2°60.0°
N2C2N1H10.7°0.0°
C2N1C6H1180.0°180.0°
C2N1C6O6178.5°180.0°
C2N1C6C50.2°0.0°
N1C2N3C40.3°0.2°
N1C2N2H2178.4°0.1°
N3C2N1C60.1°0.2°
C2N3C4C50.2°0.0°
C2N3C4N9180.0°180.0°
N3C2N2H20.8°179.7°
N3C2N1H1179.9°179.8°
N1C6O6C5178.5°180.0°
N1C6C5C40.3°0.3°
N1C6C5N7179.6°180.0°
O6C6C5C4178.3°179.7°
O6C6C5N71.8°0.0°
O6C6N1H11.5°0.0°
C6C5C4N30.1°0.3°
C6C5C4N7179.9°179.8°
C6C5C4N9179.7°179.7°
C6C5N7C8179.9°180.0°
C5C6N1H1179.8°179.9°
N3C4C5N9179.8°180.0°
N3C4C5N7179.8°179.9°
N3C4N9C8179.7°179.7°
N3C4N9CBE3.8°0.0°
C4C5N7C80.1°0.3°
C5C4N9C80.4°0.3°
C5C4N9CBE176.0°180.0°
N9C4C5N70.4°0.0°
C4N9C8N70.4°0.5°
C4N9C8CBE176.4°179.7°
C4N9CBEOAU118.5°156.4°
C4N9CBECAO120.9°88.2°
C4N9C8H8179.6°180.0°
C4N9CBEHBE4.1°34.2°
C5N7C8N90.2°0.5°
C5N7C8H8179.9°180.0°
N7C8N9H8180.0°179.5°
N7C8N9CBE176.0°179.8°
C8N9CBEOAU57.3°23.9°
C8N9CBECAO63.4°91.4°
C8N9CBEHBE179.9°146.2°
N9CBEOAUCAO127.5°118.8°
N9CBEOAUHBE115.0°122.3°
N9CBECAOHBE114.4°122.4°
N9CBEOAUCBD160.7°159.3°
N9CBECAOCBC127.5°142.8°
CBEN9C8H84.0°0.3°
N9CBECAOHAO1112.5°98.6°
N9CBECAOHAO25.1°24.1°
OAUCBECAOHBE122.8°118.8°
OAUCBECAOCBC4.7°24.0°
CBEOAUCBDCBC47.7°40.5°
CBEOAUCBDCAN168.4°159.4°
OAUCBECAOHAO1124.7°142.6°
OAUCBECAOHAO2117.6°94.7°
CBEOAUCBDHBD75.3°78.4°
CAOCBEOAUCBD33.2°40.5°
CBECAOCBCHAO1120.0°118.7°
CBECAOCBCHAO2122.3°118.7°
CBECAOCBCCBD22.9°0.0°
CBECAOCBCO3'139.7°118.7°
CBECAOHAO1HAO2122.6°122.7°
CBECAOCBCHBC101.0°118.6°
OAUCBDCBCCAO42.9°24.0°
OAUCBDCBCCAN120.8°118.8°
OAUCBDCBCHBD122.8°118.8°
OAUCBDCBCO3'161.1°142.6°
OAUCBDCANHBD123.2°122.2°
OAUCBDCANHAN1163.7°53.6°
OAUCBDCANHAN243.1°173.6°
CBDOAUCBEHBE84.4°78.4°
OAUCBDCBCHBC79.7°94.6°
CAOCBCCBDO3'118.2°118.6°
CAOCBCCBDHBC122.6°118.6°
CAOCBCO3'HBC123.3°122.6°
CAOCBCCBDCAN163.7°142.8°
CBCCAOCBEHBE118.1°94.8°
CBCCAOHAO1HAO2122.6°122.6°
CAOCBCCBDHBD79.9°94.9°
CAOCBCO3'H3'116.0°61.4°
CBDCBCO3'HBC124.5°122.7°
CBCCBDCANHBD123.4°122.4°
CBCCBDCANHAN182.8°61.9°
CBCCBDCANHAN2156.6°58.2°
CBDCBCCAOHAO197.1°118.7°
CBDCBCCAOHAO2145.3°118.7°
CBDCBCO3'H3'3.7°176.1°
O3'CBCCBDCAN78.1°98.6°
O3'CBCCAOHAO119.7°0.0°
O3'CBCCAOHAO298.0°122.7°
O3'CBCCBDHBD38.2°23.8°
CBDCANHAN1HAN2119.5°120.0°
CANCBDCBCHBC41.1°24.2°
HAN1CANCBDHBD40.5°175.8°
HAN2CANCBDHBD80.1°64.1°
HAKCAKCAFHAF0.0°0.1°
HAFCAFCAEHAE0.1°0.0°
HAECAECAIHAI0.0°0.0°
HAJCAJCAGHAG0.0°0.0°
HAGCAGCAHHAH0.2°0.0°
HAM1CAMN2H2127.3°120.0°
HAM2CAMN2H2113.8°120.0°
HBECBECAOHAO11.9°23.8°
HBECBECAOHAO2119.5°146.5°
HAO1CAOCBCHBC139.0°122.7°
HAO2CAOCBCHBC21.3°0.0°
HBDCBDCBCHBC157.4°146.5°
HBCCBCO3'H3'120.7°61.2°

223532

PDB entries from 2024-08-07

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