MSG
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O5' | C5' | sing | 1.43Å | 1.46Å | |
| O5' | H5' | sing | 0.97Å | 0.95Å | |
| C5' | C4' | sing | 1.53Å | 1.54Å | |
| C5' | H5'1 | sing | 1.09Å | 1.11Å | |
| C5' | H5'2 | sing | 1.09Å | 1.12Å | |
| C4' | O4' | sing | 1.44Å | 1.48Å | |
| C4' | C3' | sing | 1.54Å | 1.58Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.50Å | |
| C1' | N9 | sing | 1.47Å | 1.47Å | |
| C1' | C2' | sing | 1.54Å | 1.53Å | |
| C1' | H1' | sing | 1.09Å | 1.11Å | |
| N9 | C8 | sing | 1.36Å | 1.36Å | Aromatic |
| N9 | C4 | sing | 1.37Å | 1.45Å | Aromatic |
| C8 | N7 | doub | 1.30Å | 1.45Å | Aromatic |
| C8 | H8 | sing | 1.08Å | 1.10Å | |
| N7 | C1 | sing | 1.46Å | 1.46Å | |
| N7 | C5 | sing | 1.36Å | 1.40Å | Aromatic |
| C1 | H11 | sing | 1.09Å | 1.11Å | |
| C1 | H12 | sing | 1.09Å | 1.11Å | |
| C1 | H13 | sing | 1.09Å | 1.12Å | |
| C5 | C6 | sing | 1.41Å | 1.47Å | Aromatic |
| C5 | C4 | doub | 1.40Å | 1.35Å | Aromatic |
| C6 | S6 | sing | 1.76Å | 1.80Å | |
| C6 | N1 | doub | 1.33Å | 1.42Å | Aromatic |
| N1 | C2 | sing | 1.33Å | 1.40Å | Aromatic |
| C2 | N2 | sing | 1.38Å | 1.46Å | |
| C2 | N3 | doub | 1.32Å | 1.35Å | Aromatic |
| N2 | HN21 | sing | 0.97Å | 1.02Å | |
| N2 | HN22 | sing | 0.97Å | 1.02Å | |
| N3 | C4 | sing | 1.33Å | 1.36Å | Aromatic |
| C2' | O2' | sing | 1.43Å | 1.46Å | |
| C2' | C3' | sing | 1.55Å | 1.60Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| O2' | H2 | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.49Å | |
| C3' | H3' | sing | 1.09Å | 1.12Å | |
| O3' | H1 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C5' | O5' | H5' | 113.7° | 106.8° |
| O5' | C5' | C4' | 113.7° | 109.5° |
| O5' | C5' | H5'1 | 110.7° | 109.5° |
| O5' | C5' | H5'2 | 110.7° | 109.4° |
| C4' | C5' | H5'1 | 110.7° | 109.5° |
| C4' | C5' | H5'2 | 110.7° | 109.5° |
| C5' | C4' | O4' | 98.9° | 110.4° |
| C5' | C4' | C3' | 117.1° | 110.5° |
| C5' | C4' | H4' | 110.4° | 110.4° |
| H5'1 | C5' | H5'2 | 99.6° | 109.5° |
| O4' | C4' | C3' | 105.1° | 104.8° |
| O4' | C4' | H4' | 121.4° | 110.4° |
| C4' | O4' | C1' | 113.6° | 105.3° |
| C3' | C4' | H4' | 104.7° | 110.4° |
| C4' | C3' | C2' | 106.8° | 104.1° |
| C4' | C3' | O3' | 112.7° | 110.5° |
| C4' | C3' | H3' | 109.1° | 110.5° |
| O4' | C1' | N9 | 109.5° | 110.4° |
| O4' | C1' | C2' | 107.4° | 104.9° |
| O4' | C1' | H1' | 112.5° | 110.4° |
| N9 | C1' | C2' | 113.9° | 110.3° |
| N9 | C1' | H1' | 105.7° | 110.3° |
| C1' | N9 | C8 | 125.1° | 126.3° |
| C1' | N9 | C4 | 127.2° | 126.2° |
| C2' | C1' | H1' | 107.9° | 110.4° |
| C1' | C2' | O2' | 107.4° | 110.8° |
| C1' | C2' | C3' | 106.5° | 104.0° |
| C1' | C2' | H2' | 114.0° | 110.5° |
| C8 | N9 | C4 | 107.7° | 107.5° |
| N9 | C8 | N7 | 109.1° | 110.0° |
| N9 | C8 | H8 | 123.0° | 125.1° |
| N9 | C4 | C5 | 106.9° | 106.0° |
| N9 | C4 | N3 | 128.6° | 134.8° |
| N7 | C8 | H8 | 128.0° | 125.0° |
| C8 | N7 | C1 | 110.6° | 125.3° |
| C8 | N7 | C5 | 104.4° | 109.4° |
| C1 | N7 | C5 | 111.1° | 125.3° |
| N7 | C1 | H11 | 111.8° | 109.5° |
| N7 | C1 | H12 | 110.6° | 109.5° |
| N7 | C1 | H13 | 111.8° | 109.5° |
| N7 | C5 | C6 | 125.6° | 134.5° |
| N7 | C5 | C4 | 112.1° | 107.2° |
| H11 | C1 | H12 | 111.8° | 109.5° |
| H11 | C1 | H13 | 98.6° | 109.4° |
| H12 | C1 | H13 | 111.8° | 109.4° |
| C6 | C5 | C4 | 122.3° | 118.3° |
| C5 | C6 | S6 | 127.2° | 120.8° |
| C5 | C6 | N1 | 110.0° | 118.6° |
| C5 | C4 | N3 | 124.5° | 119.2° |
| S6 | C6 | N1 | 122.8° | 120.7° |
| C6 | N1 | C2 | 125.5° | 121.1° |
| N1 | C2 | N2 | 119.7° | 118.9° |
| N1 | C2 | N3 | 120.3° | 122.2° |
| N2 | C2 | N3 | 119.9° | 118.9° |
| C2 | N2 | HN21 | 108.5° | 120.0° |
| C2 | N2 | HN22 | 119.7° | 120.0° |
| C2 | N3 | C4 | 117.3° | 120.6° |
| HN21 | N2 | HN22 | 108.6° | 120.0° |
| O2' | C2' | C3' | 113.2° | 110.5° |
| O2' | C2' | H2' | 107.5° | 110.4° |
| C2' | O2' | H2 | 107.4° | 106.8° |
| C3' | C2' | H2' | 108.3° | 110.5° |
| C2' | C3' | O3' | 109.3° | 110.6° |
| C2' | C3' | H3' | 112.5° | 110.6° |
| O3' | C3' | H3' | 106.5° | 110.4° |
| C3' | O3' | H1 | 112.7° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | C5' | C4' | H5'1 | 125.3° | 120.0° |
| O5' | C5' | C4' | H5'2 | 125.2° | 120.0° |
| O5' | C5' | H5'1 | H5'2 | 116.5° | 120.0° |
| O5' | C5' | C4' | O4' | 39.4° | 66.5° |
| O5' | C5' | C4' | C3' | 72.7° | 178.2° |
| O5' | C5' | C4' | H4' | 167.7° | 55.8° |
| H5' | O5' | C5' | C4' | 180.0° | 179.9° |
| H5' | O5' | C5' | H5'1 | 54.7° | 59.9° |
| H5' | O5' | C5' | H5'2 | 54.7° | 60.1° |
| C4' | C5' | H5'1 | H5'2 | 116.5° | 120.0° |
| C5' | C4' | O4' | C3' | 121.3° | 118.9° |
| C5' | C4' | O4' | H4' | 120.5° | 122.3° |
| C5' | C4' | C3' | H4' | 122.5° | 122.4° |
| C5' | C4' | O4' | C1' | 113.1° | 159.5° |
| C5' | C4' | C3' | C2' | 101.0° | 142.9° |
| C5' | C4' | C3' | O3' | 138.9° | 98.4° |
| C5' | C4' | C3' | H3' | 20.8° | 24.2° |
| H5'1 | C5' | C4' | O4' | 85.9° | 173.5° |
| H5'1 | C5' | C4' | C3' | 162.0° | 58.1° |
| H5'1 | C5' | C4' | H4' | 42.4° | 64.2° |
| H5'2 | C5' | C4' | O4' | 164.6° | 53.5° |
| H5'2 | C5' | C4' | C3' | 52.5° | 61.8° |
| H5'2 | C5' | C4' | H4' | 67.0° | 175.8° |
| O4' | C4' | C3' | H4' | 128.9° | 118.8° |
| C4' | O4' | C1' | N9 | 118.6° | 159.3° |
| C4' | O4' | C1' | C2' | 5.5° | 40.5° |
| C4' | O4' | C1' | H1' | 124.1° | 78.4° |
| O4' | C4' | C3' | C2' | 7.6° | 24.1° |
| O4' | C4' | C3' | O3' | 112.5° | 142.8° |
| O4' | C4' | C3' | H3' | 129.4° | 94.7° |
| C3' | C4' | O4' | C1' | 8.2° | 40.5° |
| C4' | C3' | C2' | C1' | 4.5° | 0.1° |
| C4' | C3' | C2' | O2' | 122.4° | 118.8° |
| C4' | C3' | C2' | O3' | 122.2° | 118.6° |
| C4' | C3' | C2' | H3' | 119.6° | 118.7° |
| C4' | C3' | C2' | H2' | 118.5° | 118.7° |
| C4' | C3' | O3' | H3' | 119.6° | 122.6° |
| C4' | C3' | O3' | H1 | 180.0° | 61.4° |
| H4' | C4' | O4' | C1' | 126.4° | 78.3° |
| H4' | C4' | C3' | C2' | 136.5° | 94.7° |
| H4' | C4' | C3' | O3' | 16.4° | 24.0° |
| H4' | C4' | C3' | H3' | 101.7° | 146.5° |
| O4' | C1' | N9 | C2' | 120.2° | 115.5° |
| O4' | C1' | N9 | H1' | 121.5° | 122.3° |
| O4' | C1' | C2' | H1' | 121.5° | 119.0° |
| O4' | C1' | N9 | C8 | 17.0° | 22.0° |
| O4' | C1' | N9 | C4 | 163.2° | 157.9° |
| O4' | C1' | C2' | O2' | 121.4° | 142.6° |
| O4' | C1' | C2' | C3' | 0.3° | 23.9° |
| O4' | C1' | C2' | H2' | 119.7° | 94.7° |
| N9 | C1' | C2' | H1' | 117.1° | 122.2° |
| C1' | N9 | C8 | C4 | 179.8° | 179.9° |
| C1' | N9 | C8 | N7 | 180.0° | 179.9° |
| C1' | N9 | C8 | H8 | 0.0° | 0.1° |
| C1' | N9 | C4 | C5 | 179.9° | 179.7° |
| C1' | N9 | C4 | N3 | 0.1° | 0.2° |
| N9 | C1' | C2' | O2' | 117.2° | 98.6° |
| N9 | C1' | C2' | C3' | 121.1° | 142.7° |
| N9 | C1' | C2' | H2' | 1.7° | 24.1° |
| C2' | C1' | N9 | C8 | 137.2° | 93.5° |
| C2' | C1' | N9 | C4 | 43.1° | 86.6° |
| C1' | C2' | O2' | C3' | 117.4° | 114.7° |
| C1' | C2' | O2' | H2' | 123.1° | 122.8° |
| C1' | C2' | C3' | H2' | 123.1° | 118.6° |
| C1' | C2' | O2' | H2 | 180.0° | 176.1° |
| C1' | C2' | C3' | O3' | 117.7° | 118.8° |
| C1' | C2' | C3' | H3' | 124.2° | 118.6° |
| H1' | C1' | N9 | C8 | 104.5° | 144.3° |
| H1' | C1' | N9 | C4 | 75.3° | 35.6° |
| H1' | C1' | C2' | O2' | 0.1° | 23.6° |
| H1' | C1' | C2' | C3' | 121.8° | 95.1° |
| H1' | C1' | C2' | H2' | 118.8° | 146.3° |
| N9 | C8 | N7 | H8 | 180.0° | 180.0° |
| N9 | C8 | N7 | C1 | 119.6° | 180.0° |
| N9 | C8 | N7 | C5 | 0.0° | 0.2° |
| C8 | N9 | C4 | C5 | 0.3° | 0.2° |
| C8 | N9 | C4 | N3 | 179.9° | 179.9° |
| C4 | N9 | C8 | N7 | 0.2° | 0.0° |
| C4 | N9 | C8 | H8 | 179.8° | 180.0° |
| N9 | C4 | C5 | N7 | 0.3° | 0.3° |
| N9 | C4 | C5 | C6 | 179.6° | 179.7° |
| N9 | C4 | C5 | N3 | 179.8° | 179.9° |
| N9 | C4 | N3 | C2 | 179.5° | 180.0° |
| C8 | N7 | C1 | C5 | 115.4° | 179.7° |
| C8 | N7 | C1 | H11 | 54.7° | 90.0° |
| C8 | N7 | C1 | H12 | 180.0° | 150.0° |
| C8 | N7 | C1 | H13 | 54.7° | 30.0° |
| C8 | N7 | C5 | C6 | 179.8° | 179.5° |
| C8 | N7 | C5 | C4 | 0.2° | 0.3° |
| H8 | C8 | N7 | C1 | 60.4° | 0.0° |
| H8 | C8 | N7 | C5 | 180.0° | 179.8° |
| N7 | C1 | H11 | H12 | 124.6° | 120.1° |
| N7 | C1 | H11 | H13 | 117.7° | 120.0° |
| N7 | C1 | H12 | H13 | 125.3° | 120.0° |
| C1 | N7 | C5 | C6 | 61.0° | 0.7° |
| C1 | N7 | C5 | C4 | 119.1° | 179.9° |
| C5 | N7 | C1 | H11 | 170.1° | 90.3° |
| C5 | N7 | C1 | H12 | 64.6° | 29.7° |
| C5 | N7 | C1 | H13 | 60.7° | 149.7° |
| N7 | C5 | C6 | C4 | 179.9° | 179.1° |
| N7 | C5 | C6 | S6 | 0.2° | 0.7° |
| N7 | C5 | C6 | N1 | 179.8° | 179.6° |
| N7 | C5 | C4 | N3 | 179.9° | 179.8° |
| H11 | C1 | H12 | H13 | 109.5° | 119.9° |
| C5 | C6 | S6 | N1 | 179.6° | 179.7° |
| C5 | C6 | N1 | C2 | 0.3° | 0.3° |
| C6 | C5 | C4 | N3 | 0.2° | 0.4° |
| C4 | C5 | C6 | S6 | 179.8° | 179.8° |
| C4 | C5 | C6 | N1 | 0.1° | 0.5° |
| C5 | C4 | N3 | C2 | 0.3° | 0.2° |
| S6 | C6 | N1 | C2 | 180.0° | 180.0° |
| C6 | N1 | C2 | N2 | 179.7° | 180.0° |
| C6 | N1 | C2 | N3 | 0.2° | 0.0° |
| N1 | C2 | N2 | N3 | 180.0° | 180.0° |
| N1 | C2 | N2 | HN21 | 54.7° | 180.0° |
| N1 | C2 | N2 | HN22 | 180.0° | 0.0° |
| N1 | C2 | N3 | C4 | 0.1° | 0.0° |
| C2 | N2 | HN21 | HN22 | 131.6° | 180.0° |
| N2 | C2 | N3 | C4 | 180.0° | 180.0° |
| N3 | C2 | N2 | HN21 | 125.3° | 0.0° |
| N3 | C2 | N2 | HN22 | 0.0° | 180.0° |
| O2' | C2' | C3' | H2' | 119.1° | 122.5° |
| O2' | C2' | C3' | O3' | 0.2° | 0.1° |
| O2' | C2' | C3' | H3' | 118.0° | 122.5° |
| C3' | C2' | O2' | H2 | 62.6° | 61.5° |
| C2' | C3' | O3' | H3' | 121.8° | 122.7° |
| C2' | C3' | O3' | H1 | 61.4° | 176.1° |
| H2' | C2' | O2' | H2 | 57.0° | 61.1° |
| H2' | C2' | C3' | O3' | 119.2° | 122.7° |
| H2' | C2' | C3' | H3' | 1.1° | 0.0° |
| H3' | C3' | O3' | H1 | 60.4° | 61.1° |
