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Summary Geometry Related PDB entries

MEW

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
CAK	CAG	doub	1.38Å	1.37Å	Aromatic
CAK	CAV	sing	1.40Å	1.39Å	Aromatic
CAG	CAH	sing	1.39Å	1.39Å	Aromatic
NAO	CAV	sing	1.36Å	1.36Å
NAO	CAT	doub	1.30Å	1.36Å
CAV	CAW	doub	1.41Å	1.42Å	Aromatic
CAN	CAT	sing	1.51Å	1.52Å
CAT	NAQ	sing	1.36Å	1.40Å
CAH	CAL	doub	1.38Å	1.39Å	Aromatic
CAW	CAL	sing	1.39Å	1.39Å	Aromatic
CAW	CAU	sing	1.47Å	1.37Å
NAQ	CAU	sing	1.35Å	1.39Å
CAU	OAC	doub	1.22Å	1.21Å
CAN	H1	sing	1.09Å	1.10Å
CAN	H2	sing	1.09Å	1.10Å
CAN	H3	sing	1.09Å	1.10Å
CAK	H4	sing	1.08Å	1.08Å
CAG	H5	sing	1.08Å	1.08Å
CAH	H6	sing	1.08Å	1.08Å
CAL	H7	sing	1.08Å	1.08Å
NAQ	H8	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CAG	CAK	CAV	120.0°	119.7°
CAK	CAG	CAH	118.8°	120.8°
CAG	CAK	H4	120.0°	120.2°
CAK	CAG	H5	120.6°	119.6°
CAK	CAV	NAO	119.7°	121.6°
CAK	CAV	CAW	119.9°	119.4°
CAV	CAK	H4	120.0°	120.2°
CAG	CAH	CAL	124.1°	120.6°
CAH	CAG	H5	120.6°	119.6°
CAG	CAH	H6	118.0°	119.7°
CAV	NAO	CAT	121.2°	121.6°
NAO	CAV	CAW	120.4°	119.0°
NAO	CAT	CAN	119.0°	118.3°
NAO	CAT	NAQ	119.7°	123.4°
CAV	CAW	CAL	121.0°	120.1°
CAV	CAW	CAU	118.5°	118.0°
CAN	CAT	NAQ	121.3°	118.3°
CAT	CAN	H1	109.5°	109.5°
CAT	CAN	H2	109.5°	109.4°
CAT	CAN	H3	109.5°	109.5°
CAT	NAQ	CAU	119.8°	120.6°
CAT	NAQ	H8	120.1°	119.7°
CAH	CAL	CAW	116.2°	119.5°
CAL	CAH	H6	118.0°	119.7°
CAH	CAL	H7	121.9°	120.3°
CAL	CAW	CAU	120.5°	121.9°
CAW	CAL	H7	121.9°	120.2°
CAW	CAU	NAQ	120.5°	117.4°
CAW	CAU	OAC	117.9°	121.3°
NAQ	CAU	OAC	121.7°	121.3°
CAU	NAQ	H8	120.1°	119.7°
H1	CAN	H2	109.5°	109.5°
H1	CAN	H3	109.5°	109.5°
H2	CAN	H3	109.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CAG	CAK	CAV	H4	180.0°	180.0°
CAK	CAG	CAH	H5	180.0°	180.0°
CAG	CAK	CAV	NAO	179.4°	180.0°
CAG	CAK	CAV	CAW	0.1°	0.0°
CAK	CAG	CAH	CAL	1.5°	0.0°
CAK	CAG	CAH	H6	178.5°	180.0°
CAV	CAK	CAG	CAH	1.1°	0.0°
CAK	CAV	NAO	CAW	179.4°	180.0°
CAK	CAV	NAO	CAT	179.0°	180.0°
CAK	CAV	CAW	CAL	0.8°	0.0°
CAK	CAV	CAW	CAU	179.9°	180.0°
CAV	CAK	CAG	H5	178.9°	180.0°
CAG	CAH	CAL	H6	180.0°	180.0°
CAG	CAH	CAL	CAW	0.7°	0.0°
CAH	CAG	CAK	H4	178.9°	180.0°
CAG	CAH	CAL	H7	179.3°	179.9°
CAV	NAO	CAT	CAN	177.7°	180.0°
CAV	NAO	CAT	NAQ	1.2°	0.3°
NAO	CAV	CAW	CAL	178.6°	180.0°
NAO	CAV	CAW	CAU	0.7°	0.0°
NAO	CAV	CAK	H4	0.6°	0.0°
CAT	NAO	CAV	CAW	1.6°	0.0°
NAO	CAT	CAN	NAQ	178.9°	179.8°
NAO	CAT	NAQ	CAU	0.1°	0.5°
NAO	CAT	CAN	H1	0.0°	89.7°
NAO	CAT	CAN	H2	120.0°	30.3°
NAO	CAT	CAN	H3	120.0°	150.3°
NAO	CAT	NAQ	H8	179.9°	179.7°
CAV	CAW	CAL	CAH	0.5°	0.0°
CAV	CAW	CAL	CAU	179.3°	180.0°
CAV	CAW	CAU	NAQ	0.5°	0.2°
CAV	CAW	CAU	OAC	179.3°	180.0°
CAW	CAV	CAK	H4	180.0°	180.0°
CAV	CAW	CAL	H7	179.5°	179.9°
CAN	CAT	NAQ	CAU	178.9°	179.7°
CAT	CAN	H1	H2	120.0°	120.0°
CAT	CAN	H1	H3	120.0°	120.0°
CAT	CAN	H2	H3	120.0°	120.0°
CAN	CAT	NAQ	H8	1.1°	0.0°
CAT	NAQ	CAU	CAW	0.9°	0.5°
CAT	NAQ	CAU	H8	180.0°	179.8°
CAT	NAQ	CAU	OAC	179.6°	179.8°
NAQ	CAT	CAN	H1	178.9°	90.0°
NAQ	CAT	CAN	H2	61.1°	150.0°
NAQ	CAT	CAN	H3	58.8°	30.0°
CAH	CAL	CAW	H7	180.0°	179.9°
CAH	CAL	CAW	CAU	179.8°	179.9°
CAL	CAH	CAG	H5	178.5°	180.0°
CAL	CAW	CAU	NAQ	179.9°	179.7°
CAL	CAW	CAU	OAC	1.4°	0.0°
CAW	CAL	CAH	H6	179.3°	180.0°
CAW	CAU	NAQ	OAC	178.7°	179.8°
CAU	CAW	CAL	H7	0.2°	0.1°
CAW	CAU	NAQ	H8	179.1°	179.7°
OAC	CAU	NAQ	H8	0.4°	0.0°
H1	CAN	H2	H3	120.0°	120.0°
H4	CAK	CAG	H5	1.1°	0.0°
H5	CAG	CAH	H6	1.5°	0.0°
H6	CAH	CAL	H7	0.6°	0.0°

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PDB entries from 2024-10-09

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