MDH
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CM | sing | 1.47Å | 1.47Å | |
| N | CA | sing | 1.40Å | 1.43Å | |
| N | H | sing | 0.97Å | 1.00Å | |
| CM | HM1 | sing | 1.09Å | 1.10Å | |
| CM | HM2 | sing | 1.09Å | 1.10Å | |
| CM | HM3 | sing | 1.09Å | 1.10Å | |
| CA | C | sing | 1.48Å | 1.51Å | |
| CA | CB | doub | 1.34Å | 1.36Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | OXT | sing | 1.35Å | 1.41Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å | |
| CB | CG | sing | 1.51Å | 1.51Å | |
| CB | HB | sing | 1.08Å | 1.08Å | |
| CG | HG1 | sing | 1.09Å | 1.10Å | |
| CG | HG2 | sing | 1.09Å | 1.10Å | |
| CG | HG3 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CM | N | CA | 119.8° | 120.0° |
| CM | N | H | 106.1° | 120.0° |
| N | CM | HM1 | 109.5° | 109.4° |
| N | CM | HM2 | 109.5° | 109.4° |
| N | CM | HM3 | 109.4° | 109.5° |
| CA | N | H | 106.2° | 120.0° |
| N | CA | C | 118.6° | 120.0° |
| N | CA | CB | 121.4° | 120.0° |
| HM1 | CM | HM2 | 109.5° | 109.5° |
| HM1 | CM | HM3 | 109.5° | 109.5° |
| HM2 | CM | HM3 | 109.5° | 109.5° |
| C | CA | CB | 119.9° | 120.0° |
| CA | C | O | 121.1° | 120.0° |
| CA | C | OXT | 113.6° | 120.0° |
| CA | CB | CG | 128.7° | 120.0° |
| CA | CB | HB | 115.7° | 120.1° |
| O | C | OXT | 125.3° | 120.0° |
| C | OXT | HXT | 109.5° | 117.0° |
| CG | CB | HB | 115.7° | 120.0° |
| CB | CG | HG1 | 109.5° | 109.4° |
| CB | CG | HG2 | 109.5° | 109.4° |
| CB | CG | HG3 | 109.5° | 109.5° |
| HG1 | CG | HG2 | 109.5° | 109.5° |
| HG1 | CG | HG3 | 109.5° | 109.5° |
| HG2 | CG | HG3 | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CM | N | CA | H | 120.0° | 179.8° |
| N | CM | HM1 | HM2 | 120.0° | 119.9° |
| N | CM | HM1 | HM3 | 120.0° | 120.0° |
| N | CM | HM2 | HM3 | 120.0° | 120.0° |
| CM | N | CA | C | 57.1° | 5.5° |
| CM | N | CA | CB | 120.6° | 174.6° |
| CA | N | CM | HM1 | 132.8° | 55.1° |
| CA | N | CM | HM2 | 107.2° | 175.0° |
| CA | N | CM | HM3 | 12.8° | 65.0° |
| N | CA | C | CB | 177.7° | 180.0° |
| N | CA | C | O | 126.1° | 0.0° |
| N | CA | C | OXT | 53.8° | 180.0° |
| N | CA | CB | CG | 1.0° | 5.1° |
| N | CA | CB | HB | 179.0° | 174.9° |
| H | N | CM | HM1 | 107.2° | 125.2° |
| H | N | CM | HM2 | 12.8° | 5.2° |
| H | N | CM | HM3 | 132.8° | 114.8° |
| H | N | CA | C | 177.1° | 174.3° |
| H | N | CA | CB | 0.6° | 5.7° |
| HM1 | CM | HM2 | HM3 | 120.0° | 120.1° |
| CA | C | O | OXT | 179.9° | 179.9° |
| CA | C | OXT | HXT | 179.9° | 180.0° |
| C | CA | CB | CG | 176.6° | 174.9° |
| C | CA | CB | HB | 3.4° | 5.1° |
| CB | CA | C | O | 51.6° | 179.9° |
| CB | CA | C | OXT | 128.5° | 0.0° |
| CA | CB | CG | HB | 180.0° | 180.0° |
| CA | CB | CG | HG1 | 81.4° | 55.0° |
| CA | CB | CG | HG2 | 158.6° | 175.0° |
| CA | CB | CG | HG3 | 38.6° | 65.0° |
| O | C | OXT | HXT | 0.0° | 0.1° |
| CB | CG | HG1 | HG2 | 120.0° | 120.0° |
| CB | CG | HG1 | HG3 | 120.0° | 120.0° |
| CB | CG | HG2 | HG3 | 120.0° | 120.0° |
| HB | CB | CG | HG1 | 98.6° | 125.0° |
| HB | CB | CG | HG2 | 21.4° | 5.0° |
| HB | CB | CG | HG3 | 141.4° | 115.0° |
| HG1 | CG | HG2 | HG3 | 120.0° | 120.1° |
