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Summary Geometry Related PDB entries

M83

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C10	doub	1.22Å	1.25Å
C10	O	sing	1.35Å	1.25Å
C10	C9	sing	1.46Å	1.46Å
C9	C8	doub	1.38Å	1.35Å	Aromatic
C9	O2	sing	1.35Å	1.38Å	Aromatic
C8	C7	sing	1.40Å	1.40Å	Aromatic
O2	C6	sing	1.34Å	1.38Å	Aromatic
C7	C6	doub	1.37Å	1.36Å	Aromatic
C6	C5	sing	1.48Å	1.46Å
C5	C4	doub	1.40Å	1.40Å	Aromatic
C5	C11	sing	1.39Å	1.39Å	Aromatic
C4	C3	sing	1.38Å	1.39Å	Aromatic
C11	C1	doub	1.39Å	1.39Å	Aromatic
C3	C2	doub	1.38Å	1.39Å	Aromatic
C1	C2	sing	1.40Å	1.39Å	Aromatic
C1	C	sing	1.43Å	1.44Å
C	N	trip	1.14Å	1.14Å
O	H1	sing	0.97Å	0.95Å
C8	H2	sing	1.08Å	1.08Å
C7	H3	sing	1.08Å	1.08Å
C4	H4	sing	1.08Å	1.08Å
C3	H5	sing	1.08Å	1.08Å
C2	H6	sing	1.08Å	1.08Å
C11	H7	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C10	O	125.7°	120.0°
O1	C10	C9	113.9°	120.0°
O	C10	C9	120.4°	120.0°
C10	O	H1	109.5°	114.0°
C10	C9	C8	128.2°	125.9°
C10	C9	O2	121.5°	125.9°
C8	C9	O2	110.3°	108.1°
C9	C8	C7	107.1°	106.7°
C9	C8	H2	126.5°	126.7°
C9	O2	C6	105.7°	109.3°
C8	C7	C6	107.2°	107.1°
C7	C8	H2	126.4°	126.6°
C8	C7	H3	126.4°	126.5°
O2	C6	C7	109.7°	108.7°
O2	C6	C5	117.6°	125.6°
C7	C6	C5	132.7°	125.7°
C6	C7	H3	126.4°	126.4°
C6	C5	C4	120.7°	120.1°
C6	C5	C11	119.9°	120.1°
C4	C5	C11	119.2°	119.8°
C5	C4	C3	120.4°	120.1°
C5	C4	H4	119.8°	119.9°
C5	C11	C1	120.3°	119.7°
C5	C11	H7	119.9°	120.1°
C4	C3	C2	120.3°	120.3°
C3	C4	H4	119.8°	119.9°
C4	C3	H5	119.9°	119.8°
C11	C1	C2	120.0°	119.8°
C11	C1	C	119.5°	120.0°
C1	C11	H7	119.8°	120.2°
C3	C2	C1	119.8°	120.2°
C2	C3	H5	119.9°	119.9°
C3	C2	H6	120.1°	119.9°
C2	C1	C	120.4°	120.1°
C1	C2	H6	120.1°	119.9°
C1	C	N	178.3°	179.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C10	O	C9	178.9°	179.8°
O1	C10	C9	C8	8.0°	0.1°
O1	C10	C9	O2	174.2°	179.7°
O1	C10	O	H1	0.0°	0.0°
O	C10	C9	C8	171.0°	179.7°
O	C10	C9	O2	6.8°	0.6°
C10	C9	C8	O2	178.0°	179.8°
C10	C9	C8	C7	177.5°	180.0°
C10	C9	O2	C6	177.7°	179.9°
C9	C10	O	H1	178.9°	179.8°
C10	C9	C8	H2	2.5°	0.0°
C9	C8	C7	H2	180.0°	180.0°
C8	C9	O2	C6	0.4°	0.3°
C9	C8	C7	C6	0.4°	0.0°
C9	C8	C7	H3	179.6°	180.0°
O2	C9	C8	C7	0.5°	0.2°
C9	O2	C6	C7	0.1°	0.3°
C9	O2	C6	C5	178.4°	179.8°
O2	C9	C8	H2	179.5°	179.8°
C8	C7	C6	O2	0.2°	0.2°
C8	C7	C6	H3	180.0°	180.0°
C8	C7	C6	C5	177.7°	180.0°
O2	C6	C7	C5	177.9°	179.8°
O2	C6	C5	C4	3.1°	179.8°
O2	C6	C5	C11	179.1°	0.0°
O2	C6	C7	H3	179.8°	179.8°
C7	C6	C5	C4	179.1°	0.0°
C7	C6	C5	C11	3.1°	179.8°
C6	C7	C8	H2	179.6°	180.0°
C6	C5	C4	C11	176.0°	179.8°
C6	C5	C4	C3	178.8°	180.0°
C6	C5	C11	C1	178.3°	179.7°
C5	C6	C7	H3	2.3°	0.0°
C6	C5	C4	H4	1.2°	0.1°
C6	C5	C11	H7	1.7°	0.0°
C5	C4	C3	H4	180.0°	179.9°
C4	C5	C11	C1	2.2°	0.5°
C5	C4	C3	C2	2.2°	0.0°
C5	C4	C3	H5	177.9°	180.0°
C4	C5	C11	H7	177.8°	179.8°
C11	C5	C4	C3	2.7°	0.2°
C5	C11	C1	H7	180.0°	179.7°
C5	C11	C1	C2	1.1°	0.6°
C5	C11	C1	C	179.4°	180.0°
C11	C5	C4	H4	177.2°	179.7°
C4	C3	C2	H5	180.0°	180.0°
C4	C3	C2	C1	1.0°	0.0°
C4	C3	C2	H6	179.0°	180.0°
C11	C1	C2	C3	0.5°	0.3°
C11	C1	C2	C	178.2°	179.4°
C11	C1	C	N	2.1°	141.4°
C11	C1	C2	H6	179.5°	179.7°
C3	C2	C1	H6	180.0°	179.9°
C3	C2	C1	C	178.7°	179.7°
C2	C3	C4	H4	177.8°	179.9°
C2	C1	C	N	179.7°	39.2°
C1	C2	C3	H5	179.0°	180.0°
C2	C1	C11	H7	178.9°	179.7°
C	C1	C2	H6	1.3°	0.3°
C	C1	C11	H7	0.6°	0.3°
H2	C8	C7	H3	0.4°	0.1°
H4	C4	C3	H5	2.2°	0.1°
H5	C3	C2	H6	1.0°	0.0°

218853

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