LYV

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	1.47Å	1.45Å
CA	CB	sing	1.53Å	1.51Å
CA	C	sing	1.51Å	1.51Å
CB	CG	sing	1.53Å	1.55Å
ND	CG	sing	1.47Å	1.48Å
ND	CE	sing	1.35Å	1.47Å
C	O	doub	1.21Å	1.21Å
N6	C4	sing	1.47Å	1.46Å
C5	C4	sing	1.53Å	1.51Å
C5	O1	sing	1.43Å	1.39Å
CZ	CE	sing	1.51Å	1.52Å
CZ	N1	sing	1.46Å	1.50Å
CE	O7	doub	1.21Å	1.22Å
C4	C2	sing	1.51Å	1.50Å
O1	P	sing	1.61Å	1.63Å
N1	C2	sing	1.35Å	1.46Å
O2	P	doub	1.48Å	1.52Å
C2	OZ1	doub	1.21Å	1.25Å
P	O3	sing	1.61Å	1.54Å
P	O4	sing	1.61Å	1.54Å
N	H	sing	1.01Å	1.00Å
N	H2	sing	1.01Å	1.00Å
CA	HA	sing	1.09Å	1.10Å
CB	H6	sing	1.09Å	1.10Å
CB	H7	sing	1.09Å	1.10Å
CG	H8	sing	1.09Å	1.10Å
CG	H9	sing	1.09Å	1.10Å
ND	H10	sing	0.97Å	1.00Å
CZ	H11	sing	1.09Å	1.10Å
CZ	H12	sing	1.09Å	1.10Å
N1	H13	sing	0.97Å	1.00Å
C4	H14	sing	1.09Å	1.10Å
C5	H15	sing	1.09Å	1.10Å
C5	H16	sing	1.09Å	1.10Å
N6	H17	sing	1.01Å	1.00Å
N6	H18	sing	1.01Å	1.00Å
O3	H20	sing	0.97Å	0.95Å
O4	H21	sing	0.97Å	0.95Å
C	OXT	sing	1.34Å	125.84Å
OXT	HXT	sing	0.97Å	0.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
N	CA	CB	102.5°	109.4°
N	CA	C	107.7°	109.5°
CA	N	H	109.5°	111.0°
CA	N	H2	109.5°	111.0°
N	CA	HA	109.2°	109.5°
CB	CA	C	120.2°	109.5°
CA	CB	CG	120.9°	109.4°
CB	CA	HA	108.4°	109.5°
CA	CB	H6	106.6°	109.5°
CA	CB	H7	106.6°	109.5°
CA	C	O	118.7°	120.0°
C	CA	HA	108.4°	109.5°
CA	C	OXT	52.6°	120.0°
CB	CG	ND	124.1°	109.5°
CG	CB	H6	106.5°	109.5°
CG	CB	H7	106.5°	109.5°
CB	CG	H8	105.7°	109.5°
CB	CG	H9	105.7°	109.5°
CG	ND	CE	117.6°	120.0°
ND	CG	H8	105.7°	109.4°
ND	CG	H9	105.7°	109.4°
CG	ND	H10	121.2°	120.0°
ND	CE	CZ	123.9°	120.0°
ND	CE	O7	118.4°	120.0°
CE	ND	H10	121.2°	120.0°
O	C	OXT	126.9°	120.0°
N6	C4	C5	108.8°	109.5°
N6	C4	C2	114.5°	109.5°
N6	C4	H14	107.5°	109.5°
C4	N6	H17	109.5°	111.0°
C4	N6	H18	109.5°	111.0°
C4	C5	O1	118.7°	109.5°
C5	C4	C2	111.9°	109.5°
C5	C4	H14	106.9°	109.4°
C4	C5	H15	107.1°	109.5°
C4	C5	H16	107.1°	109.5°
C5	O1	P	123.1°	123.0°
O1	C5	H15	107.1°	109.4°
O1	C5	H16	107.1°	109.5°
CE	CZ	N1	112.6°	109.5°
CZ	CE	O7	117.7°	120.0°
CE	CZ	H11	108.7°	109.5°
CE	CZ	H12	108.7°	109.5°
CZ	N1	C2	129.3°	120.1°
N1	CZ	H11	108.7°	109.5°
N1	CZ	H12	108.7°	109.4°
CZ	N1	H13	115.3°	119.9°
C4	C2	N1	126.3°	120.0°
C4	C2	OZ1	116.9°	120.0°
C2	C4	H14	106.9°	109.5°
O1	P	O2	108.8°	109.5°
O1	P	O3	111.4°	109.5°
O1	P	O4	110.0°	109.4°
N1	C2	OZ1	116.8°	119.9°
C2	N1	H13	115.3°	120.0°
O2	P	O3	108.5°	109.5°
O2	P	O4	109.0°	109.4°
O3	P	O4	109.1°	109.5°
P	O3	H20	109.5°	114.0°
P	O4	H21	109.5°	114.0°
H	N	H2	109.5°	111.1°
H6	CB	H7	109.5°	109.5°
H8	CG	H9	109.5°	109.5°
H11	CZ	H12	109.5°	109.4°
H15	C5	H16	109.5°	109.4°
H17	N6	H18	109.4°	111.0°
C	OXT	HXT	90.0°	117.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N	CA	CB	C	119.3°	120.0°
N	CA	CB	HA	115.4°	120.0°
N	CA	C	HA	118.0°	120.0°
N	CA	CB	CG	175.0°	65.0°
N	CA	C	O	145.5°	20.0°
CA	N	H	H2	120.0°	124.0°
N	CA	CB	H6	53.4°	55.0°
N	CA	CB	H7	63.4°	175.0°
N	CA	C	OXT	98.2°	160.0°
CB	CA	C	HA	125.3°	120.0°
CA	CB	CG	H6	121.6°	120.0°
CA	CB	CG	H7	121.6°	120.0°
CA	CB	CG	ND	124.1°	180.0°
CB	CA	C	O	97.8°	100.0°
CB	CA	N	H	180.0°	60.0°
CB	CA	N	H2	60.0°	64.0°
CA	CB	H6	H7	114.9°	120.0°
CA	CB	CG	H8	114.0°	60.0°
CA	CB	CG	H9	2.0°	60.0°
CB	CA	C	OXT	18.5°	80.0°
C	CA	CB	CG	65.7°	175.0°
CA	C	O	OXT	62.9°	180.0°
C	CA	N	H	52.3°	59.9°
C	CA	N	H2	67.7°	176.1°
C	CA	CB	H6	172.7°	65.0°
C	CA	CB	H7	55.9°	55.0°
CA	C	OXT	HXT	90.0°	180.0°
CB	CG	ND	H8	122.0°	120.0°
CB	CG	ND	H9	122.0°	120.0°
CB	CG	ND	CE	140.6°	180.0°
CG	CB	CA	HA	59.6°	55.0°
CG	CB	H6	H7	114.8°	120.0°
CB	CG	H8	H9	113.4°	120.1°
CB	CG	ND	H10	39.4°	0.0°
CG	ND	CE	H10	180.0°	180.0°
CG	ND	CE	CZ	178.8°	180.0°
CG	ND	CE	O7	0.4°	0.0°
ND	CG	CB	H6	2.4°	60.0°
ND	CG	CB	H7	114.4°	60.0°
ND	CG	H8	H9	113.4°	119.9°
ND	CE	CZ	O7	179.2°	180.0°
ND	CE	CZ	N1	154.7°	180.0°
CE	ND	CG	H8	18.6°	60.0°
CE	ND	CG	H9	97.4°	60.0°
ND	CE	CZ	H11	34.2°	59.9°
ND	CE	CZ	H12	84.8°	60.0°
O	C	CA	HA	27.5°	140.0°
O	C	OXT	HXT	90.0°	0.0°
N6	C4	C5	C2	127.5°	120.0°
N6	C4	C5	H14	115.8°	119.9°
N6	C4	C5	O1	158.0°	64.9°
N6	C4	C2	H14	118.9°	120.0°
N6	C4	C2	N1	40.0°	160.0°
N6	C4	C2	OZ1	141.7°	20.0°
N6	C4	C5	H15	36.7°	55.0°
N6	C4	C5	H16	80.7°	175.0°
C4	N6	H17	H18	120.0°	124.0°
C4	C5	O1	H15	121.3°	120.0°
C4	C5	O1	H16	121.3°	120.0°
C5	C4	C2	H14	116.7°	119.9°
C4	C5	O1	P	86.5°	180.0°
C5	C4	C2	N1	84.4°	79.9°
C5	C4	C2	OZ1	93.9°	100.0°
C4	C5	H15	H16	115.8°	120.0°
C5	C4	N6	H17	180.0°	176.0°
C5	C4	N6	H18	60.0°	60.0°
O1	C5	C4	C2	74.5°	175.0°
C5	O1	P	O2	114.3°	54.9°
C5	O1	P	O3	5.3°	175.0°
C5	O1	P	O4	126.4°	65.0°
O1	C5	C4	H14	42.2°	55.0°
O1	C5	H15	H16	115.8°	120.0°
CE	CZ	N1	H11	120.5°	120.1°
CE	CZ	N1	H12	120.5°	120.0°
CE	CZ	N1	C2	151.0°	180.0°
CZ	CE	ND	H10	1.2°	0.0°
CE	CZ	H11	H12	118.6°	120.0°
CE	CZ	N1	H13	29.0°	0.1°
N1	CZ	CE	O7	24.5°	0.0°
CZ	N1	C2	C4	2.2°	180.0°
CZ	N1	C2	H13	180.0°	179.9°
CZ	N1	C2	OZ1	179.5°	0.0°
N1	CZ	H11	H12	118.6°	119.9°
O7	CE	ND	H10	179.6°	180.0°
O7	CE	CZ	H11	145.0°	120.0°
O7	CE	CZ	H12	96.0°	120.0°
C4	C2	N1	OZ1	178.3°	180.0°
C4	C2	N1	H13	177.8°	0.1°
C2	C4	C5	H15	164.2°	65.0°
C2	C4	C5	H16	46.8°	55.0°
C2	C4	N6	H17	54.0°	64.0°
C2	C4	N6	H18	66.0°	60.0°
O1	P	O2	O3	121.4°	120.0°
O1	P	O2	O4	119.9°	120.0°
O1	P	O3	O4	121.6°	120.0°
P	O1	C5	H15	152.2°	60.0°
P	O1	C5	H16	34.8°	59.9°
O1	P	O3	H20	119.8°	180.0°
O1	P	O4	H21	119.1°	60.0°
C2	N1	CZ	H11	30.5°	59.9°
C2	N1	CZ	H12	88.5°	60.0°
N1	C2	C4	H14	158.9°	40.0°
O2	P	O3	O4	118.6°	120.0°
O2	P	O3	H20	0.0°	60.0°
O2	P	O4	H21	0.0°	180.0°
OZ1	C2	N1	H13	0.5°	179.9°
OZ1	C2	C4	H14	22.8°	140.0°
O3	P	O4	H21	118.3°	60.0°
O4	P	O3	H20	118.6°	60.0°
H	N	CA	HA	65.2°	180.0°
H2	N	CA	HA	174.8°	56.0°
HA	CA	CB	H6	62.0°	175.0°
HA	CA	CB	H7	178.8°	65.0°
HA	CA	C	OXT	143.9°	40.0°
H6	CB	CG	H8	124.4°	180.0°
H6	CB	CG	H9	119.6°	60.0°
H7	CB	CG	H8	7.6°	60.0°
H7	CB	CG	H9	123.6°	180.0°
H8	CG	ND	H10	161.4°	120.0°
H9	CG	ND	H10	82.6°	120.0°
H11	CZ	N1	H13	149.4°	120.0°
H12	CZ	N1	H13	91.5°	120.1°
H14	C4	C5	H15	79.1°	175.0°
H14	C4	C5	H16	163.5°	65.1°
H14	C4	N6	H17	64.6°	56.1°
H14	C4	N6	H18	175.4°	179.9°

Release date:	2014-12-03
Definition date:	2013-12-06
Last modified:	2023-11-03
Release status:	REL
Processing site:	RCSB
Derived from:	4NGH