JDB
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
CAY | OAX | sing | 1.43Å | 1.46Å | |
OAX | CAW | sing | 1.36Å | 1.36Å | |
CAW | CAT | doub | 1.37Å | 1.41Å | Aromatic |
CAW | CAV | sing | 1.40Å | 1.41Å | Aromatic |
CAT | CAR | sing | 1.40Å | 1.41Å | Aromatic |
CAR | CAS | doub | 1.40Å | 1.42Å | Aromatic |
CAR | CAQ | sing | 1.42Å | 1.38Å | Aromatic |
CAV | CAU | doub | 1.36Å | 1.36Å | Aromatic |
CAS | CAN | sing | 1.36Å | 1.41Å | Aromatic |
CAU | CAQ | sing | 1.41Å | 1.42Å | Aromatic |
CAQ | CAP | doub | 1.40Å | 1.39Å | Aromatic |
CAN | CAM | sing | 1.51Å | 1.43Å | |
CAN | CAO | doub | 1.39Å | 1.41Å | Aromatic |
CAM | CAL | sing | 1.53Å | 1.56Å | |
CAP | CAO | sing | 1.36Å | 1.42Å | Aromatic |
CAL | C5 | sing | 1.51Å | 1.41Å | |
O6 | C6 | doub | 1.22Å | 1.25Å | |
C5 | C6 | sing | 1.47Å | 1.42Å | |
C5 | C4 | doub | 1.36Å | 1.37Å | |
C6 | N1 | sing | 1.35Å | 1.42Å | |
OAK | CAI | doub | 1.21Å | 1.24Å | |
C4 | CAI | sing | 1.48Å | 1.45Å | |
C4 | N3 | sing | 1.38Å | 1.44Å | |
CAI | OAJ | sing | 1.35Å | 1.24Å | |
N1 | C2 | sing | 1.34Å | 1.38Å | |
N3 | C2 | sing | 1.34Å | 1.38Å | |
C2 | O2 | doub | 1.22Å | 1.24Å | |
OAJ | H1 | sing | 0.97Å | 0.95Å | |
N1 | H2 | sing | 0.97Å | 1.00Å | |
CAL | H4 | sing | 1.09Å | 1.10Å | |
CAL | H5 | sing | 1.09Å | 1.10Å | |
CAM | H6 | sing | 1.09Å | 1.10Å | |
CAM | H7 | sing | 1.09Å | 1.10Å | |
CAS | H8 | sing | 1.08Å | 1.08Å | |
CAT | H9 | sing | 1.08Å | 1.08Å | |
CAY | H10 | sing | 1.09Å | 1.10Å | |
CAY | H11 | sing | 1.09Å | 1.10Å | |
CAY | H12 | sing | 1.09Å | 1.10Å | |
CAV | H13 | sing | 1.08Å | 1.08Å | |
CAU | H14 | sing | 1.08Å | 1.08Å | |
CAP | H15 | sing | 1.08Å | 1.08Å | |
CAO | H16 | sing | 1.08Å | 1.08Å | |
N3 | H17 | sing | 0.97Å | 1.00Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CAY | OAX | CAW | 112.9° | 117.0° |
OAX | CAY | H10 | 109.5° | 109.5° |
OAX | CAY | H11 | 109.5° | 109.4° |
OAX | CAY | H12 | 109.5° | 109.5° |
OAX | CAW | CAT | 121.0° | 119.5° |
OAX | CAW | CAV | 117.0° | 119.6° |
CAT | CAW | CAV | 122.1° | 120.9° |
CAW | CAT | CAR | 119.9° | 119.6° |
CAW | CAT | H9 | 120.1° | 120.2° |
CAW | CAV | CAU | 117.5° | 120.9° |
CAW | CAV | H13 | 121.3° | 119.5° |
CAT | CAR | CAS | 122.0° | 121.3° |
CAT | CAR | CAQ | 116.8° | 119.4° |
CAR | CAT | H9 | 120.1° | 120.2° |
CAS | CAR | CAQ | 121.2° | 119.3° |
CAR | CAS | CAN | 122.2° | 119.7° |
CAR | CAS | H8 | 118.9° | 120.2° |
CAR | CAQ | CAU | 122.9° | 119.4° |
CAR | CAQ | CAP | 118.0° | 119.3° |
CAV | CAU | CAQ | 120.9° | 119.8° |
CAU | CAV | H13 | 121.3° | 119.6° |
CAV | CAU | H14 | 119.6° | 120.2° |
CAS | CAN | CAM | 123.4° | 119.5° |
CAS | CAN | CAO | 115.9° | 121.0° |
CAN | CAS | H8 | 118.9° | 120.1° |
CAU | CAQ | CAP | 119.1° | 121.3° |
CAQ | CAU | H14 | 119.5° | 120.1° |
CAQ | CAP | CAO | 121.4° | 119.6° |
CAQ | CAP | H15 | 119.3° | 120.1° |
CAM | CAN | CAO | 120.7° | 119.5° |
CAN | CAM | CAL | 107.1° | 109.4° |
CAN | CAM | H6 | 110.1° | 109.5° |
CAN | CAM | H7 | 110.1° | 109.5° |
CAN | CAO | CAP | 121.3° | 121.0° |
CAN | CAO | H16 | 119.4° | 119.5° |
CAM | CAL | C5 | 109.9° | 109.4° |
CAM | CAL | H4 | 109.4° | 109.5° |
CAM | CAL | H5 | 109.4° | 109.5° |
CAL | CAM | H6 | 110.1° | 109.5° |
CAL | CAM | H7 | 110.1° | 109.5° |
CAO | CAP | H15 | 119.3° | 120.2° |
CAP | CAO | H16 | 119.4° | 119.5° |
CAL | C5 | C6 | 120.2° | 120.8° |
CAL | C5 | C4 | 120.7° | 120.8° |
C5 | CAL | H4 | 109.3° | 109.5° |
C5 | CAL | H5 | 109.4° | 109.5° |
O6 | C6 | C5 | 123.4° | 120.5° |
O6 | C6 | N1 | 119.0° | 120.6° |
C6 | C5 | C4 | 119.0° | 118.4° |
C5 | C6 | N1 | 117.3° | 118.9° |
C5 | C4 | CAI | 125.8° | 120.3° |
C5 | C4 | N3 | 120.8° | 119.4° |
C6 | N1 | C2 | 125.0° | 120.4° |
C6 | N1 | H2 | 117.5° | 119.8° |
OAK | CAI | C4 | 120.9° | 120.0° |
OAK | CAI | OAJ | 120.6° | 120.0° |
CAI | C4 | N3 | 113.0° | 120.3° |
C4 | CAI | OAJ | 118.4° | 120.0° |
C4 | N3 | C2 | 121.5° | 121.2° |
C4 | N3 | H17 | 119.3° | 119.4° |
CAI | OAJ | H1 | 109.5° | 117.0° |
N1 | C2 | N3 | 116.1° | 121.8° |
N1 | C2 | O2 | 123.7° | 119.1° |
C2 | N1 | H2 | 117.5° | 119.8° |
N3 | C2 | O2 | 120.2° | 119.1° |
C2 | N3 | H17 | 119.3° | 119.4° |
H4 | CAL | H5 | 109.5° | 109.5° |
H6 | CAM | H7 | 109.5° | 109.5° |
H10 | CAY | H11 | 109.4° | 109.4° |
H10 | CAY | H12 | 109.5° | 109.5° |
H11 | CAY | H12 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CAY | OAX | CAW | CAT | 36.2° | 180.0° |
CAY | OAX | CAW | CAV | 144.2° | 0.0° |
OAX | CAY | H10 | H11 | 120.0° | 119.9° |
OAX | CAY | H10 | H12 | 120.0° | 120.1° |
OAX | CAY | H11 | H12 | 120.0° | 120.0° |
OAX | CAW | CAT | CAV | 179.6° | 180.0° |
OAX | CAW | CAT | CAR | 178.3° | 180.0° |
OAX | CAW | CAV | CAU | 178.0° | 180.0° |
OAX | CAW | CAT | H9 | 1.7° | 0.0° |
CAW | OAX | CAY | H10 | 180.0° | 60.0° |
CAW | OAX | CAY | H11 | 60.0° | 60.0° |
CAW | OAX | CAY | H12 | 60.0° | 180.0° |
OAX | CAW | CAV | H13 | 1.9° | 0.0° |
CAW | CAT | CAR | H9 | 180.0° | 180.0° |
CAW | CAT | CAR | CAS | 179.5° | 179.9° |
CAW | CAT | CAR | CAQ | 1.7° | 0.0° |
CAT | CAW | CAV | CAU | 2.3° | 0.0° |
CAT | CAW | CAV | H13 | 177.7° | 180.0° |
CAV | CAW | CAT | CAR | 2.1° | 0.1° |
CAW | CAV | CAU | H13 | 180.0° | 179.9° |
CAW | CAV | CAU | CAQ | 2.2° | 0.1° |
CAV | CAW | CAT | H9 | 177.9° | 180.0° |
CAW | CAV | CAU | H14 | 177.8° | 180.0° |
CAT | CAR | CAS | CAQ | 177.7° | 179.9° |
CAT | CAR | CAS | CAN | 179.6° | 180.0° |
CAT | CAR | CAQ | CAU | 1.6° | 0.1° |
CAT | CAR | CAQ | CAP | 179.2° | 180.0° |
CAT | CAR | CAS | H8 | 0.4° | 0.1° |
CAR | CAS | CAN | H8 | 180.0° | 179.9° |
CAS | CAR | CAQ | CAU | 179.5° | 180.0° |
CAS | CAR | CAQ | CAP | 3.0° | 0.1° |
CAR | CAS | CAN | CAM | 178.0° | 180.0° |
CAR | CAS | CAN | CAO | 0.7° | 0.3° |
CAS | CAR | CAT | H9 | 0.5° | 0.1° |
CAR | CAQ | CAU | CAV | 2.0° | 0.1° |
CAQ | CAR | CAS | CAN | 1.9° | 0.1° |
CAR | CAQ | CAU | CAP | 177.5° | 179.9° |
CAR | CAQ | CAP | CAO | 1.6° | 0.3° |
CAQ | CAR | CAS | H8 | 178.1° | 180.0° |
CAQ | CAR | CAT | H9 | 178.3° | 180.0° |
CAR | CAQ | CAU | H14 | 178.0° | 179.9° |
CAR | CAQ | CAP | H15 | 178.4° | 180.0° |
CAV | CAU | CAQ | H14 | 180.0° | 180.0° |
CAV | CAU | CAQ | CAP | 179.5° | 180.0° |
CAS | CAN | CAM | CAO | 178.6° | 179.7° |
CAS | CAN | CAM | CAL | 98.3° | 89.7° |
CAS | CAN | CAO | CAP | 2.1° | 0.5° |
CAS | CAN | CAM | H6 | 142.1° | 150.3° |
CAS | CAN | CAM | H7 | 21.4° | 30.3° |
CAS | CAN | CAO | H16 | 177.9° | 179.7° |
CAU | CAQ | CAP | CAO | 179.2° | 179.8° |
CAQ | CAU | CAV | H13 | 177.8° | 179.9° |
CAU | CAQ | CAP | H15 | 0.8° | 0.1° |
CAQ | CAP | CAO | CAN | 1.0° | 0.5° |
CAQ | CAP | CAO | H15 | 180.0° | 179.7° |
CAP | CAQ | CAU | H14 | 0.5° | 0.0° |
CAQ | CAP | CAO | H16 | 179.0° | 179.7° |
CAN | CAM | CAL | H6 | 119.6° | 120.0° |
CAN | CAM | CAL | H7 | 119.6° | 120.0° |
CAM | CAN | CAO | CAP | 176.6° | 179.7° |
CAN | CAM | CAL | C5 | 83.3° | 180.0° |
CAN | CAM | CAL | H4 | 156.6° | 60.0° |
CAN | CAM | CAL | H5 | 36.8° | 60.0° |
CAN | CAM | H6 | H7 | 121.1° | 120.0° |
CAM | CAN | CAS | H8 | 2.0° | 0.1° |
CAM | CAN | CAO | H16 | 3.4° | 0.0° |
CAO | CAN | CAM | CAL | 80.3° | 90.0° |
CAN | CAO | CAP | H16 | 180.0° | 179.8° |
CAO | CAN | CAM | H6 | 39.3° | 30.0° |
CAO | CAN | CAM | H7 | 160.1° | 150.0° |
CAO | CAN | CAS | H8 | 179.3° | 179.8° |
CAN | CAO | CAP | H15 | 179.0° | 179.8° |
CAM | CAL | C5 | H4 | 120.1° | 120.0° |
CAM | CAL | C5 | H5 | 120.1° | 120.0° |
CAM | CAL | C5 | C6 | 65.1° | 88.2° |
CAM | CAL | C5 | C4 | 112.6° | 91.4° |
CAM | CAL | H4 | H5 | 119.8° | 120.1° |
CAL | CAM | H6 | H7 | 121.1° | 120.0° |
CAL | C5 | C6 | O6 | 4.5° | 0.2° |
CAL | C5 | C6 | C4 | 177.8° | 179.6° |
CAL | C5 | C6 | N1 | 179.8° | 180.0° |
CAL | C5 | C4 | CAI | 3.7° | 0.2° |
CAL | C5 | C4 | N3 | 175.9° | 180.0° |
C5 | CAL | H4 | H5 | 119.8° | 120.0° |
C5 | CAL | CAM | H6 | 36.3° | 60.0° |
C5 | CAL | CAM | H7 | 157.0° | 60.0° |
O6 | C6 | C5 | N1 | 175.3° | 179.8° |
O6 | C6 | C5 | C4 | 177.7° | 179.8° |
O6 | C6 | N1 | C2 | 178.6° | 180.0° |
O6 | C6 | N1 | H2 | 1.4° | 0.0° |
C6 | C5 | C4 | CAI | 174.1° | 179.8° |
C6 | C5 | C4 | N3 | 1.9° | 0.4° |
C5 | C6 | N1 | C2 | 5.9° | 0.2° |
C5 | C6 | N1 | H2 | 174.1° | 179.8° |
C6 | C5 | CAL | H4 | 54.9° | 31.8° |
C6 | C5 | CAL | H5 | 174.8° | 151.8° |
C4 | C5 | C6 | N1 | 2.4° | 0.4° |
C5 | C4 | CAI | OAK | 57.4° | 6.3° |
C5 | C4 | CAI | N3 | 172.7° | 179.8° |
C5 | C4 | CAI | OAJ | 126.5° | 173.7° |
C5 | C4 | N3 | C2 | 3.3° | 0.2° |
C4 | C5 | CAL | H4 | 127.3° | 148.6° |
C4 | C5 | CAL | H5 | 7.5° | 28.6° |
C5 | C4 | N3 | H17 | 176.7° | 179.8° |
C6 | N1 | C2 | H2 | 180.0° | 180.0° |
C6 | N1 | C2 | N3 | 4.6° | 0.1° |
C6 | N1 | C2 | O2 | 172.7° | 180.0° |
OAK | CAI | C4 | OAJ | 176.0° | 180.0° |
OAK | CAI | C4 | N3 | 129.8° | 174.0° |
OAK | CAI | OAJ | H1 | 0.0° | 0.0° |
CAI | C4 | N3 | C2 | 176.4° | 180.0° |
C4 | CAI | OAJ | H1 | 176.0° | 180.0° |
CAI | C4 | N3 | H17 | 3.6° | 0.0° |
N3 | C4 | CAI | OAJ | 46.2° | 6.1° |
C4 | N3 | C2 | N1 | 0.1° | 0.0° |
C4 | N3 | C2 | H17 | 180.0° | 180.0° |
C4 | N3 | C2 | O2 | 177.5° | 180.0° |
N1 | C2 | N3 | O2 | 177.4° | 180.0° |
N1 | C2 | N3 | H17 | 179.9° | 179.9° |
N3 | C2 | N1 | H2 | 175.4° | 180.0° |
O2 | C2 | N1 | H2 | 7.3° | 0.0° |
O2 | C2 | N3 | H17 | 2.5° | 0.0° |
H4 | CAL | CAM | H6 | 83.8° | 180.0° |
H4 | CAL | CAM | H7 | 37.0° | 60.0° |
H5 | CAL | CAM | H6 | 156.4° | 59.9° |
H5 | CAL | CAM | H7 | 82.9° | 180.0° |
H10 | CAY | H11 | H12 | 120.0° | 120.1° |
H13 | CAV | CAU | H14 | 2.2° | 0.1° |
H15 | CAP | CAO | H16 | 1.0° | 0.0° |