Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

JDB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
CAYOAXsing1.43Å1.46Å
OAXCAWsing1.36Å1.36Å
CAWCATdoub1.37Å1.41ÅAromatic
CAWCAVsing1.40Å1.41ÅAromatic
CATCARsing1.40Å1.41ÅAromatic
CARCASdoub1.40Å1.42ÅAromatic
CARCAQsing1.42Å1.38ÅAromatic
CAVCAUdoub1.36Å1.36ÅAromatic
CASCANsing1.36Å1.41ÅAromatic
CAUCAQsing1.41Å1.42ÅAromatic
CAQCAPdoub1.40Å1.39ÅAromatic
CANCAMsing1.51Å1.43Å
CANCAOdoub1.39Å1.41ÅAromatic
CAMCALsing1.53Å1.56Å
CAPCAOsing1.36Å1.42ÅAromatic
CALC5sing1.51Å1.41Å
O6C6doub1.22Å1.25Å
C5C6sing1.47Å1.42Å
C5C4doub1.36Å1.37Å
C6N1sing1.35Å1.42Å
OAKCAIdoub1.21Å1.24Å
C4CAIsing1.48Å1.45Å
C4N3sing1.38Å1.44Å
CAIOAJsing1.35Å1.24Å
N1C2sing1.34Å1.38Å
N3C2sing1.34Å1.38Å
C2O2doub1.22Å1.24Å
OAJH1sing0.97Å0.95Å
N1H2sing0.97Å1.00Å
CALH4sing1.09Å1.10Å
CALH5sing1.09Å1.10Å
CAMH6sing1.09Å1.10Å
CAMH7sing1.09Å1.10Å
CASH8sing1.08Å1.08Å
CATH9sing1.08Å1.08Å
CAYH10sing1.09Å1.10Å
CAYH11sing1.09Å1.10Å
CAYH12sing1.09Å1.10Å
CAVH13sing1.08Å1.08Å
CAUH14sing1.08Å1.08Å
CAPH15sing1.08Å1.08Å
CAOH16sing1.08Å1.08Å
N3H17sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
CAYOAXCAW112.9°117.0°
OAXCAYH10109.5°109.5°
OAXCAYH11109.5°109.4°
OAXCAYH12109.5°109.5°
OAXCAWCAT121.0°119.5°
OAXCAWCAV117.0°119.6°
CATCAWCAV122.1°120.9°
CAWCATCAR119.9°119.6°
CAWCATH9120.1°120.2°
CAWCAVCAU117.5°120.9°
CAWCAVH13121.3°119.5°
CATCARCAS122.0°121.3°
CATCARCAQ116.8°119.4°
CARCATH9120.1°120.2°
CASCARCAQ121.2°119.3°
CARCASCAN122.2°119.7°
CARCASH8118.9°120.2°
CARCAQCAU122.9°119.4°
CARCAQCAP118.0°119.3°
CAVCAUCAQ120.9°119.8°
CAUCAVH13121.3°119.6°
CAVCAUH14119.6°120.2°
CASCANCAM123.4°119.5°
CASCANCAO115.9°121.0°
CANCASH8118.9°120.1°
CAUCAQCAP119.1°121.3°
CAQCAUH14119.5°120.1°
CAQCAPCAO121.4°119.6°
CAQCAPH15119.3°120.1°
CAMCANCAO120.7°119.5°
CANCAMCAL107.1°109.4°
CANCAMH6110.1°109.5°
CANCAMH7110.1°109.5°
CANCAOCAP121.3°121.0°
CANCAOH16119.4°119.5°
CAMCALC5109.9°109.4°
CAMCALH4109.4°109.5°
CAMCALH5109.4°109.5°
CALCAMH6110.1°109.5°
CALCAMH7110.1°109.5°
CAOCAPH15119.3°120.2°
CAPCAOH16119.4°119.5°
CALC5C6120.2°120.8°
CALC5C4120.7°120.8°
C5CALH4109.3°109.5°
C5CALH5109.4°109.5°
O6C6C5123.4°120.5°
O6C6N1119.0°120.6°
C6C5C4119.0°118.4°
C5C6N1117.3°118.9°
C5C4CAI125.8°120.3°
C5C4N3120.8°119.4°
C6N1C2125.0°120.4°
C6N1H2117.5°119.8°
OAKCAIC4120.9°120.0°
OAKCAIOAJ120.6°120.0°
CAIC4N3113.0°120.3°
C4CAIOAJ118.4°120.0°
C4N3C2121.5°121.2°
C4N3H17119.3°119.4°
CAIOAJH1109.5°117.0°
N1C2N3116.1°121.8°
N1C2O2123.7°119.1°
C2N1H2117.5°119.8°
N3C2O2120.2°119.1°
C2N3H17119.3°119.4°
H4CALH5109.5°109.5°
H6CAMH7109.5°109.5°
H10CAYH11109.4°109.4°
H10CAYH12109.5°109.5°
H11CAYH12109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
CAYOAXCAWCAT36.2°180.0°
CAYOAXCAWCAV144.2°0.0°
OAXCAYH10H11120.0°119.9°
OAXCAYH10H12120.0°120.1°
OAXCAYH11H12120.0°120.0°
OAXCAWCATCAV179.6°180.0°
OAXCAWCATCAR178.3°180.0°
OAXCAWCAVCAU178.0°180.0°
OAXCAWCATH91.7°0.0°
CAWOAXCAYH10180.0°60.0°
CAWOAXCAYH1160.0°60.0°
CAWOAXCAYH1260.0°180.0°
OAXCAWCAVH131.9°0.0°
CAWCATCARH9180.0°180.0°
CAWCATCARCAS179.5°179.9°
CAWCATCARCAQ1.7°0.0°
CATCAWCAVCAU2.3°0.0°
CATCAWCAVH13177.7°180.0°
CAVCAWCATCAR2.1°0.1°
CAWCAVCAUH13180.0°179.9°
CAWCAVCAUCAQ2.2°0.1°
CAVCAWCATH9177.9°180.0°
CAWCAVCAUH14177.8°180.0°
CATCARCASCAQ177.7°179.9°
CATCARCASCAN179.6°180.0°
CATCARCAQCAU1.6°0.1°
CATCARCAQCAP179.2°180.0°
CATCARCASH80.4°0.1°
CARCASCANH8180.0°179.9°
CASCARCAQCAU179.5°180.0°
CASCARCAQCAP3.0°0.1°
CARCASCANCAM178.0°180.0°
CARCASCANCAO0.7°0.3°
CASCARCATH90.5°0.1°
CARCAQCAUCAV2.0°0.1°
CAQCARCASCAN1.9°0.1°
CARCAQCAUCAP177.5°179.9°
CARCAQCAPCAO1.6°0.3°
CAQCARCASH8178.1°180.0°
CAQCARCATH9178.3°180.0°
CARCAQCAUH14178.0°179.9°
CARCAQCAPH15178.4°180.0°
CAVCAUCAQH14180.0°180.0°
CAVCAUCAQCAP179.5°180.0°
CASCANCAMCAO178.6°179.7°
CASCANCAMCAL98.3°89.7°
CASCANCAOCAP2.1°0.5°
CASCANCAMH6142.1°150.3°
CASCANCAMH721.4°30.3°
CASCANCAOH16177.9°179.7°
CAUCAQCAPCAO179.2°179.8°
CAQCAUCAVH13177.8°179.9°
CAUCAQCAPH150.8°0.1°
CAQCAPCAOCAN1.0°0.5°
CAQCAPCAOH15180.0°179.7°
CAPCAQCAUH140.5°0.0°
CAQCAPCAOH16179.0°179.7°
CANCAMCALH6119.6°120.0°
CANCAMCALH7119.6°120.0°
CAMCANCAOCAP176.6°179.7°
CANCAMCALC583.3°180.0°
CANCAMCALH4156.6°60.0°
CANCAMCALH536.8°60.0°
CANCAMH6H7121.1°120.0°
CAMCANCASH82.0°0.1°
CAMCANCAOH163.4°0.0°
CAOCANCAMCAL80.3°90.0°
CANCAOCAPH16180.0°179.8°
CAOCANCAMH639.3°30.0°
CAOCANCAMH7160.1°150.0°
CAOCANCASH8179.3°179.8°
CANCAOCAPH15179.0°179.8°
CAMCALC5H4120.1°120.0°
CAMCALC5H5120.1°120.0°
CAMCALC5C665.1°88.2°
CAMCALC5C4112.6°91.4°
CAMCALH4H5119.8°120.1°
CALCAMH6H7121.1°120.0°
CALC5C6O64.5°0.2°
CALC5C6C4177.8°179.6°
CALC5C6N1179.8°180.0°
CALC5C4CAI3.7°0.2°
CALC5C4N3175.9°180.0°
C5CALH4H5119.8°120.0°
C5CALCAMH636.3°60.0°
C5CALCAMH7157.0°60.0°
O6C6C5N1175.3°179.8°
O6C6C5C4177.7°179.8°
O6C6N1C2178.6°180.0°
O6C6N1H21.4°0.0°
C6C5C4CAI174.1°179.8°
C6C5C4N31.9°0.4°
C5C6N1C25.9°0.2°
C5C6N1H2174.1°179.8°
C6C5CALH454.9°31.8°
C6C5CALH5174.8°151.8°
C4C5C6N12.4°0.4°
C5C4CAIOAK57.4°6.3°
C5C4CAIN3172.7°179.8°
C5C4CAIOAJ126.5°173.7°
C5C4N3C23.3°0.2°
C4C5CALH4127.3°148.6°
C4C5CALH57.5°28.6°
C5C4N3H17176.7°179.8°
C6N1C2H2180.0°180.0°
C6N1C2N34.6°0.1°
C6N1C2O2172.7°180.0°
OAKCAIC4OAJ176.0°180.0°
OAKCAIC4N3129.8°174.0°
OAKCAIOAJH10.0°0.0°
CAIC4N3C2176.4°180.0°
C4CAIOAJH1176.0°180.0°
CAIC4N3H173.6°0.0°
N3C4CAIOAJ46.2°6.1°
C4N3C2N10.1°0.0°
C4N3C2H17180.0°180.0°
C4N3C2O2177.5°180.0°
N1C2N3O2177.4°180.0°
N1C2N3H17179.9°179.9°
N3C2N1H2175.4°180.0°
O2C2N1H27.3°0.0°
O2C2N3H172.5°0.0°
H4CALCAMH683.8°180.0°
H4CALCAMH737.0°60.0°
H5CALCAMH6156.4°59.9°
H5CALCAMH782.9°180.0°
H10CAYH11H12120.0°120.1°
H13CAVCAUH142.2°0.1°
H15CAPCAOH161.0°0.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon