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SummaryGeometryRelated PDB entries

IRB

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
OAACAOdoub1.21Å1.25Å
OABCARdoub1.22Å1.24Å
OACNALsing1.42Å1.35Å
OADCAOsing1.35Å1.27Å
BRAECAQsing1.89Å1.94Å
CAFCAGdoub1.39Å1.41ÅAromatic
CAFCAIsing1.38Å1.42ÅAromatic
CAGCAQsing1.38Å1.40ÅAromatic
CAHCAJdoub1.38Å1.39ÅAromatic
CAHCAPsing1.40Å1.39ÅAromatic
CAICAWdoub1.39Å1.40ÅAromatic
CAJCAVsing1.40Å1.38ÅAromatic
CAKCAPdoub1.40Å1.41ÅAromatic
CAKCAXsing1.39Å1.41ÅAromatic
NALCATdoub1.31Å1.33Å
NAMCARsing1.34Å1.34Å
NAMCAYsing1.39Å1.33Å
NANCASsing1.37Å1.35Å
NANCAVsing1.38Å1.33Å
CAOCAPsing1.47Å1.53Å
CAQCAYdoub1.39Å1.39ÅAromatic
CARCAUsing1.47Å1.41Å
CASCATsing1.48Å1.40Å
CASCAUdoub1.39Å1.40Å
CATCAXsing1.48Å1.39Å
CAUCAWsing1.48Å1.41Å
CAVCAXdoub1.40Å1.40ÅAromatic
CAWCAYsing1.40Å1.43ÅAromatic
OACHOACsing0.97Å0.95Å
CAFHAFsing1.08Å1.08Å
CAGHAGsing1.08Å1.08Å
CAHHAHsing1.08Å1.08Å
CAIHAIsing1.08Å1.08Å
CAJHAJsing1.08Å1.08Å
CAKHAKsing1.08Å1.08Å
NAMHNAMsing0.97Å1.00Å
NANHNANsing0.97Å1.00Å
OADHOADsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OAACAOOAD125.9°120.0°
OAACAOCAP118.7°120.1°
OABCARNAM124.9°126.0°
OABCARCAU123.9°126.0°
OACNALCAT117.7°120.0°
NALOACHOAC109.5°114.1°
OADCAOCAP113.9°120.0°
CAOOADHOAD109.5°117.0°
BRAECAQCAG122.9°120.0°
BRAECAQCAY118.4°119.9°
CAGCAFCAI121.4°120.1°
CAFCAGCAQ119.8°120.7°
CAGCAFHAF119.3°119.9°
CAFCAGHAG120.1°119.6°
CAFCAICAW119.1°119.7°
CAICAFHAF119.3°120.0°
CAFCAIHAI120.4°120.1°
CAGCAQCAY118.6°120.1°
CAQCAGHAG120.1°119.7°
CAJCAHCAP120.2°120.5°
CAHCAJCAV120.0°120.3°
CAJCAHHAH119.9°119.8°
CAHCAJHAJ120.0°119.8°
CAHCAPCAK121.1°119.7°
CAHCAPCAO116.2°120.2°
CAPCAHHAH119.9°119.8°
CAICAWCAU136.0°133.3°
CAICAWCAY118.4°120.4°
CAWCAIHAI120.5°120.1°
CAJCAVNAN129.6°131.1°
CAJCAVCAX120.4°119.3°
CAVCAJHAJ120.0°119.9°
CAPCAKCAX117.7°119.7°
CAKCAPCAO122.5°120.1°
CAPCAKHAK121.1°120.1°
CAKCAXCAT135.0°132.7°
CAKCAXCAV120.6°120.5°
CAXCAKHAK121.2°120.2°
NALCATCAS127.5°127.5°
NALCATCAX123.2°127.5°
CARNAMCAY108.5°111.3°
NAMCARCAU111.1°108.0°
CARNAMHNAM125.8°124.3°
NAMCAYCAQ127.6°131.8°
NAMCAYCAW109.8°109.2°
CAYNAMHNAM125.7°124.4°
CASNANCAV110.2°111.2°
NANCASCAT105.7°107.4°
NANCASCAU124.2°126.3°
CASNANHNAN124.9°124.4°
NANCAVCAX110.0°109.6°
CAVNANHNAN124.9°124.4°
CAQCAYCAW122.6°119.1°
CARCAUCAS117.8°127.4°
CARCAUCAW105.1°105.1°
CATCASCAU127.6°126.3°
CASCATCAX109.1°105.0°
CASCAUCAW135.2°127.5°
CATCAXCAV104.4°106.8°
CAUCAWCAY105.3°106.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OAACAOOADCAP165.5°179.9°
OAACAOCAPCAH168.9°180.0°
OAACAOCAPCAK15.4°0.1°
OAACAOOADHOAD0.0°0.1°
OABCARNAMCAU175.7°179.9°
OABCARNAMCAY178.5°180.0°
OABCARCAUCAS12.8°0.1°
OABCARCAUCAW179.2°180.0°
OABCARNAMHNAM1.4°0.1°
OACNALCATCAS160.3°180.0°
OACNALCATCAX14.5°0.1°
OADCAOCAPCAH24.5°0.0°
OADCAOCAPCAK151.3°179.9°
BRAECAQCAGCAF178.9°180.0°
BRAECAQCAGCAY176.8°179.9°
BRAECAQCAYNAM2.6°0.1°
BRAECAQCAYCAW177.8°180.0°
BRAECAQCAGHAG1.1°0.0°
CAGCAFCAIHAF180.0°179.7°
CAFCAGCAQHAG180.0°180.0°
CAGCAFCAICAW0.7°0.0°
CAFCAGCAQCAY2.1°0.0°
CAGCAFCAIHAI179.3°179.9°
CAICAFCAGCAQ1.4°0.0°
CAFCAICAWHAI180.0°179.9°
CAFCAICAWCAU174.7°180.0°
CAFCAICAWCAY1.9°0.0°
CAICAFCAGHAG178.6°180.0°
CAGCAQCAYNAM179.5°180.0°
CAGCAQCAYCAW0.9°0.0°
CAQCAGCAFHAF178.6°179.7°
CAJCAHCAPHAH180.0°179.8°
CAHCAJCAVHAJ180.0°179.9°
CAJCAHCAPCAK0.0°0.1°
CAHCAJCAVNAN179.5°180.0°
CAJCAHCAPCAO175.8°180.0°
CAHCAJCAVCAX1.4°0.1°
CAPCAHCAJCAV0.8°0.1°
CAHCAPCAKCAO175.5°179.9°
CAHCAPCAKCAX0.2°0.1°
CAPCAHCAJHAJ179.2°180.0°
CAHCAPCAKHAK179.8°180.0°
CAICAWCAYNAM178.5°180.0°
CAICAWCAYCAQ1.1°0.0°
CAICAWCAUCAR178.5°180.0°
CAICAWCAUCAS18.7°0.0°
CAICAWCAUCAY173.5°180.0°
CAWCAICAFHAF179.3°179.7°
CAJCAVCAXCAK1.2°0.0°
CAJCAVNANCAS177.2°180.0°
CAJCAVNANCAX178.2°179.9°
CAJCAVCAXCAT178.2°179.9°
CAVCAJCAHHAH179.2°179.7°
CAJCAVNANHNAN2.8°0.1°
CAPCAKCAXHAK180.0°180.0°
CAPCAKCAXCAT178.9°179.9°
CAPCAKCAXCAV0.4°0.0°
CAKCAPCAHHAH180.0°179.7°
CAKCAXCATNAL0.5°0.1°
CAKCAXCAVNAN179.6°180.0°
CAXCAKCAPCAO175.7°180.0°
CAKCAXCATCAS176.1°180.0°
CAKCAXCATCAV179.3°180.0°
NALCATCASNAN177.4°180.0°
NALCATCASCAX175.3°179.9°
NALCATCASCAU15.2°0.1°
NALCATCAXCAV179.8°180.0°
CATNALOACHOAC180.0°179.9°
CARNAMCAYHNAM180.0°179.9°
CARNAMCAYCAQ179.1°180.0°
NAMCARCAUCAS171.4°180.0°
NAMCARCAUCAW5.1°0.1°
CARNAMCAYCAW0.6°0.0°
NAMCAYCAQCAW179.6°180.0°
CAYNAMCARCAU2.9°0.0°
NAMCAYCAWCAU3.7°0.0°
CASNANCAVHNAN180.0°179.9°
NANCASCAUCAR6.9°11.6°
NANCASCATCAU162.2°179.9°
NANCASCATCAX7.3°0.1°
NANCASCAUCAW168.1°168.5°
CASNANCAVCAX4.6°0.1°
CAVNANCASCAT7.2°0.1°
CAVNANCASCAU170.2°180.0°
NANCAVCAXCAT0.1°0.0°
NANCAVCAJHAJ0.5°0.1°
CAOCAPCAHHAH4.2°0.2°
CAOCAPCAKHAK4.3°0.1°
CAPCAOOADHOAD165.5°180.0°
CAQCAYCAWCAU176.0°180.0°
CAYCAQCAGHAG177.9°180.0°
CAQCAYNAMHNAM0.9°0.0°
CARCAUCASCAT152.3°168.3°
CARCAUCASCAW161.2°179.9°
CARCAUCAWCAY5.1°0.1°
CAUCARNAMHNAM177.1°180.0°
CATCASCAUCAW8.9°11.6°
CASCATCAXCAV4.6°0.1°
CATCASNANHNAN172.8°180.0°
CAUCASCATCAX169.5°180.0°
CASCAUCAWCAY167.9°180.0°
CAUCASNANHNAN9.8°0.1°
CATCAXCAKHAK1.2°0.0°
CAUCAWCAIHAI5.3°0.1°
CAXCAVCAJHAJ178.6°180.0°
CAVCAXCAKHAK179.6°180.0°
CAXCAVNANHNAN175.4°179.9°
CAYCAWCAIHAI178.1°179.9°
CAWCAYNAMHNAM179.4°179.9°
HAFCAFCAGHAG1.4°0.3°
HAFCAFCAIHAI0.7°0.2°
HAHCAHCAJHAJ0.9°0.2°

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PDB entries from 2024-09-11

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