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Summary Geometry Related PDB entries

IPG

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	CA	sing	1.47Å	1.46Å
N	CN	sing	1.47Å	1.47Å
N	H	sing	1.01Å	1.02Å
CA	C	sing	1.51Å	1.52Å
CA	HA3	sing	1.09Å	1.11Å
CA	HA2	sing	1.09Å	1.12Å
C	O	doub	1.21Å	1.23Å
C	OXT	sing	1.34Å	1.34Å
CN	CG1	sing	1.53Å	1.53Å
CN	CG2	sing	1.53Å	1.52Å
CN	HCN	sing	1.09Å	1.12Å
CG1	HG11	sing	1.09Å	1.12Å
CG1	HG12	sing	1.09Å	1.12Å
CG1	HG13	sing	1.09Å	1.11Å
CG2	HG21	sing	1.09Å	1.12Å
CG2	HG22	sing	1.09Å	1.11Å
CG2	HG23	sing	1.09Å	1.11Å
OXT	HXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
CA	N	CN	110.6°	106.7°
CA	N	H	111.8°	106.7°
N	CA	C	112.4°	109.5°
N	CA	HA3	111.1°	109.5°
N	CA	HA2	111.1°	109.5°
CN	N	H	111.8°	106.7°
N	CN	CG1	110.8°	109.5°
N	CN	CG2	110.7°	109.5°
N	CN	HCN	108.2°	109.5°
C	CA	HA3	111.1°	109.4°
C	CA	HA2	111.1°	109.4°
CA	C	O	120.0°	119.9°
CA	C	OXT	118.3°	120.1°
HA3	CA	HA2	99.3°	109.5°
O	C	OXT	121.7°	120.0°
C	OXT	HXT	118.2°	120.0°
CG1	CN	CG2	110.9°	109.4°
CG1	CN	HCN	108.0°	109.5°
CN	CG1	HG11	110.9°	109.5°
CN	CG1	HG12	111.7°	109.5°
CN	CG1	HG13	111.7°	109.5°
CG2	CN	HCN	108.1°	109.5°
CN	CG2	HG21	110.7°	109.4°
CN	CG2	HG22	111.7°	109.5°
CN	CG2	HG23	111.7°	109.4°
HG11	CG1	HG12	111.6°	109.4°
HG11	CG1	HG13	111.7°	109.5°
HG12	CG1	HG13	98.7°	109.4°
HG21	CG2	HG22	111.8°	109.5°
HG21	CG2	HG23	111.8°	109.5°
HG22	CG2	HG23	98.7°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
CA	N	CN	H	125.3°	113.8°
N	CA	C	HA3	125.2°	120.0°
N	CA	C	HA2	125.2°	120.0°
N	CA	HA3	HA2	117.0°	120.0°
N	CA	C	O	14.9°	0.1°
N	CA	C	OXT	164.2°	180.0°
CA	N	CN	CG1	63.6°	150.0°
CA	N	CN	CG2	60.0°	90.0°
CA	N	CN	HCN	178.3°	30.0°
CN	N	CA	C	115.4°	180.0°
CN	N	CA	HA3	119.4°	60.0°
CN	N	CA	HA2	9.8°	60.0°
N	CN	CG1	CG2	123.5°	120.0°
N	CN	CG1	HCN	118.3°	120.0°
N	CN	CG2	HCN	118.3°	120.0°
N	CN	CG1	HG11	180.0°	180.0°
N	CN	CG1	HG12	54.8°	60.0°
N	CN	CG1	HG13	54.7°	60.0°
N	CN	CG2	HG21	180.0°	60.0°
N	CN	CG2	HG22	54.8°	60.0°
N	CN	CG2	HG23	54.8°	180.0°
H	N	CA	C	9.9°	66.2°
H	N	CA	HA3	115.3°	173.8°
H	N	CA	HA2	135.1°	53.8°
H	N	CN	CG1	61.7°	96.2°
H	N	CN	CG2	174.7°	23.8°
H	N	CN	HCN	56.5°	143.8°
C	CA	HA3	HA2	117.0°	119.9°
CA	C	O	OXT	179.1°	179.9°
CA	C	OXT	HXT	180.0°	180.0°
HA3	CA	C	O	140.1°	120.0°
HA3	CA	C	OXT	39.0°	59.9°
HA2	CA	C	O	110.3°	120.1°
HA2	CA	C	OXT	70.5°	60.0°
O	C	OXT	HXT	0.9°	0.1°
CG1	CN	CG2	HCN	118.2°	120.0°
CN	CG1	HG11	HG12	125.2°	120.0°
CN	CG1	HG11	HG13	125.3°	120.1°
CN	CG1	HG12	HG13	117.6°	120.0°
CG1	CN	CG2	HG21	56.5°	60.0°
CG1	CN	CG2	HG22	68.7°	180.0°
CG1	CN	CG2	HG23	178.3°	60.0°
CG2	CN	CG1	HG11	56.6°	60.0°
CG2	CN	CG1	HG12	178.2°	180.0°
CG2	CN	CG1	HG13	68.8°	60.1°
CN	CG2	HG21	HG22	125.2°	120.0°
CN	CG2	HG21	HG23	125.2°	119.9°
CN	CG2	HG22	HG23	117.6°	120.0°
HCN	CN	CG1	HG11	61.7°	60.0°
HCN	CN	CG1	HG12	63.5°	60.0°
HCN	CN	CG1	HG13	173.0°	180.0°
HCN	CN	CG2	HG21	61.7°	179.9°
HCN	CN	CG2	HG22	173.1°	60.1°
HCN	CN	CG2	HG23	63.6°	60.0°
HG11	CG1	HG12	HG13	117.6°	120.0°
HG21	CG2	HG22	HG23	117.7°	120.0°

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PDB entries from 2024-10-09

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