G5H
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OD1 | CG | doub | 1.21Å | 1.26Å | |
| CG | OD2 | sing | 1.34Å | 1.25Å | |
| CG | CB | sing | 1.51Å | 1.52Å | |
| CB | CA | sing | 1.53Å | 1.53Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| O2' | C2' | sing | 1.43Å | 1.42Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | O4' | sing | 1.44Å | 1.44Å | |
| C5' | O5' | sing | 1.43Å | 1.45Å | |
| CA | N | sing | 1.47Å | 1.48Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| C3' | C2' | sing | 1.54Å | 1.53Å | |
| O4' | C1' | sing | 1.44Å | 1.42Å | |
| C2' | C1' | sing | 1.54Å | 1.54Å | |
| C1' | N1 | sing | 1.47Å | 1.47Å | |
| C | N3S | sing | 1.35Å | 1.44Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| N3S | S | sing | 1.66Å | 1.60Å | |
| O5' | S | sing | 1.52Å | 1.59Å | |
| O2S | S | doub | 1.42Å | 1.42Å | |
| S | O1S | doub | 1.42Å | 1.42Å | |
| O2 | C2 | doub | 1.22Å | 1.22Å | |
| N1 | C2 | sing | 1.34Å | 1.38Å | |
| N1 | C6 | sing | 1.37Å | 1.38Å | |
| C2 | N3 | sing | 1.35Å | 1.37Å | |
| C6 | C5 | doub | 1.35Å | 1.34Å | |
| N3 | C4 | sing | 1.35Å | 1.38Å | |
| C5 | C4 | sing | 1.42Å | 1.43Å | |
| C4 | O4 | doub | 1.22Å | 1.24Å | |
| C5' | H1 | sing | 1.09Å | 1.10Å | |
| C5' | H2 | sing | 1.09Å | 1.10Å | |
| O2' | H3 | sing | 0.97Å | 0.95Å | |
| C4' | H4 | sing | 1.09Å | 1.10Å | |
| C3' | H5 | sing | 1.09Å | 1.10Å | |
| O3' | H6 | sing | 0.97Å | 0.95Å | |
| C2' | H7 | sing | 1.09Å | 1.10Å | |
| C1' | H8 | sing | 1.09Å | 1.10Å | |
| C5 | H9 | sing | 1.08Å | 1.08Å | |
| C6 | H10 | sing | 1.08Å | 1.08Å | |
| N | H11 | sing | 1.01Å | 1.00Å | |
| N | H12 | sing | 1.01Å | 1.00Å | |
| CA | H14 | sing | 1.09Å | 1.10Å | |
| CB | H15 | sing | 1.09Å | 1.10Å | |
| CB | H16 | sing | 1.09Å | 1.10Å | |
| OD2 | H17 | sing | 0.97Å | 0.95Å | |
| N3 | H18 | sing | 0.97Å | 1.00Å | |
| N3S | H19 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| OD1 | CG | OD2 | 124.9° | 120.0° |
| OD1 | CG | CB | 116.9° | 120.0° |
| OD2 | CG | CB | 118.2° | 120.0° |
| CG | OD2 | H17 | 109.5° | 117.0° |
| CG | CB | CA | 112.1° | 109.5° |
| CG | CB | H15 | 108.8° | 109.5° |
| CG | CB | H16 | 108.8° | 109.5° |
| CB | CA | N | 115.2° | 109.5° |
| CB | CA | C | 108.2° | 109.5° |
| CB | CA | H14 | 108.7° | 109.4° |
| CA | CB | H15 | 108.8° | 109.4° |
| CA | CB | H16 | 108.8° | 109.5° |
| O3' | C3' | C4' | 110.1° | 110.5° |
| O3' | C3' | C2' | 112.0° | 110.5° |
| O3' | C3' | H5 | 111.7° | 110.5° |
| C3' | O3' | H6 | 109.5° | 114.0° |
| O2' | C2' | C3' | 111.9° | 110.6° |
| O2' | C2' | C1' | 109.2° | 110.5° |
| C2' | O2' | H3 | 109.5° | 114.0° |
| O2' | C2' | H7 | 112.1° | 110.4° |
| C5' | C4' | C3' | 115.0° | 110.4° |
| C5' | C4' | O4' | 109.6° | 110.4° |
| C4' | C5' | O5' | 106.8° | 109.4° |
| C4' | C5' | H1 | 110.1° | 109.5° |
| C4' | C5' | H2 | 110.2° | 109.5° |
| C5' | C4' | H4 | 109.2° | 110.3° |
| C3' | C4' | O4' | 103.9° | 104.8° |
| C4' | C3' | C2' | 102.2° | 104.0° |
| C3' | C4' | H4 | 109.0° | 110.4° |
| C4' | C3' | H5 | 110.3° | 110.5° |
| C4' | O4' | C1' | 109.3° | 105.2° |
| O4' | C4' | H4 | 110.1° | 110.4° |
| C5' | O5' | S | 118.0° | 114.0° |
| O5' | C5' | H1 | 110.1° | 109.5° |
| O5' | C5' | H2 | 110.1° | 109.5° |
| N | CA | C | 106.2° | 109.5° |
| CA | N | H11 | 109.5° | 111.0° |
| CA | N | H12 | 109.4° | 111.0° |
| N | CA | H14 | 109.4° | 109.5° |
| CA | C | N3S | 113.2° | 120.0° |
| CA | C | O | 129.3° | 120.0° |
| C | CA | H14 | 108.9° | 109.5° |
| C3' | C2' | C1' | 102.5° | 104.1° |
| C2' | C3' | H5 | 110.1° | 110.6° |
| C3' | C2' | H7 | 110.4° | 110.5° |
| O4' | C1' | C2' | 107.6° | 104.8° |
| O4' | C1' | N1 | 109.0° | 110.4° |
| O4' | C1' | H8 | 109.8° | 110.3° |
| C2' | C1' | N1 | 113.2° | 110.4° |
| C1' | C2' | H7 | 110.3° | 110.6° |
| C2' | C1' | H8 | 108.2° | 110.4° |
| C1' | N1 | C2 | 117.3° | 119.7° |
| C1' | N1 | C6 | 121.2° | 119.6° |
| N1 | C1' | H8 | 109.1° | 110.4° |
| N3S | C | O | 117.5° | 120.0° |
| C | N3S | S | 127.4° | 120.0° |
| C | N3S | H19 | 116.3° | 120.0° |
| N3S | S | O5' | 104.0° | 107.2° |
| N3S | S | O2S | 109.4° | 106.4° |
| N3S | S | O1S | 110.7° | 106.4° |
| S | N3S | H19 | 116.3° | 120.0° |
| O5' | S | O2S | 105.7° | 106.4° |
| O5' | S | O1S | 104.0° | 106.4° |
| O2S | S | O1S | 121.4° | 123.1° |
| O2 | C2 | N1 | 122.9° | 119.5° |
| O2 | C2 | N3 | 122.1° | 119.6° |
| C2 | N1 | C6 | 121.3° | 120.7° |
| N1 | C2 | N3 | 115.1° | 120.9° |
| N1 | C6 | C5 | 122.1° | 119.6° |
| N1 | C6 | H10 | 119.0° | 120.2° |
| C2 | N3 | C4 | 126.8° | 120.3° |
| C2 | N3 | H18 | 116.6° | 119.9° |
| C6 | C5 | C4 | 119.7° | 119.1° |
| C6 | C5 | H9 | 120.1° | 120.4° |
| C5 | C6 | H10 | 118.9° | 120.1° |
| N3 | C4 | C5 | 114.9° | 119.4° |
| N3 | C4 | O4 | 119.5° | 120.3° |
| C4 | N3 | H18 | 116.6° | 119.8° |
| C5 | C4 | O4 | 125.5° | 120.3° |
| C4 | C5 | H9 | 120.2° | 120.4° |
| H1 | C5' | H2 | 109.4° | 109.5° |
| H11 | N | H12 | 109.5° | 111.0° |
| H15 | CB | H16 | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OD1 | CG | OD2 | CB | 179.8° | 179.9° |
| OD1 | CG | CB | CA | 130.5° | 0.1° |
| OD1 | CG | CB | H15 | 109.1° | 120.0° |
| OD1 | CG | CB | H16 | 10.1° | 120.0° |
| OD1 | CG | OD2 | H17 | 0.0° | 0.0° |
| OD2 | CG | CB | CA | 49.7° | 180.0° |
| OD2 | CG | CB | H15 | 70.7° | 60.1° |
| OD2 | CG | CB | H16 | 170.1° | 59.9° |
| CG | CB | CA | H15 | 120.4° | 120.0° |
| CG | CB | CA | H16 | 120.4° | 120.1° |
| CG | CB | CA | N | 78.8° | 65.0° |
| CG | CB | CA | C | 162.5° | 175.0° |
| CG | CB | CA | H14 | 44.5° | 55.0° |
| CG | CB | H15 | H16 | 118.8° | 120.0° |
| CB | CG | OD2 | H17 | 179.8° | 180.0° |
| CB | CA | N | C | 119.8° | 120.0° |
| CB | CA | N | H14 | 122.9° | 119.9° |
| CB | CA | C | H14 | 118.0° | 120.0° |
| CB | CA | C | N3S | 69.0° | 80.0° |
| CB | CA | C | O | 109.9° | 100.0° |
| CB | CA | N | H11 | 180.0° | 176.0° |
| CB | CA | N | H12 | 60.0° | 60.0° |
| CA | CB | H15 | H16 | 118.7° | 120.0° |
| O3' | C3' | C2' | O2' | 32.7° | 0.0° |
| O3' | C3' | C4' | C5' | 82.8° | 98.5° |
| O3' | C3' | C4' | C2' | 119.2° | 118.6° |
| O3' | C3' | C4' | H5 | 123.8° | 122.7° |
| O3' | C3' | C4' | O4' | 157.5° | 142.6° |
| O3' | C3' | C2' | H5 | 125.0° | 122.7° |
| O3' | C3' | C2' | C1' | 149.6° | 118.7° |
| O3' | C3' | C4' | H4 | 40.2° | 23.7° |
| O3' | C3' | C2' | H7 | 92.9° | 122.6° |
| O2' | C2' | C3' | C4' | 85.2° | 118.7° |
| O2' | C2' | C3' | C1' | 116.9° | 118.7° |
| O2' | C2' | C3' | H7 | 125.6° | 122.5° |
| O2' | C2' | C1' | O4' | 104.1° | 142.7° |
| O2' | C2' | C1' | H7 | 123.6° | 122.6° |
| O2' | C2' | C1' | N1 | 135.5° | 98.5° |
| O2' | C2' | C3' | H5 | 157.7° | 122.7° |
| O2' | C2' | C1' | H8 | 14.5° | 23.9° |
| C5' | C4' | C3' | O4' | 119.7° | 118.8° |
| C5' | C4' | C3' | H4 | 123.0° | 122.2° |
| C5' | C4' | O4' | H4 | 120.1° | 122.2° |
| C4' | C5' | O5' | H1 | 119.6° | 120.0° |
| C4' | C5' | O5' | H2 | 119.6° | 120.0° |
| C5' | C4' | C3' | C2' | 158.0° | 142.8° |
| C5' | C4' | O4' | C1' | 153.8° | 159.3° |
| C4' | C5' | O5' | S | 132.0° | 180.0° |
| C4' | C5' | H1 | H2 | 121.2° | 120.0° |
| C5' | C4' | C3' | H5 | 41.0° | 24.1° |
| C3' | C4' | O4' | H4 | 116.6° | 118.9° |
| C3' | C4' | C5' | O5' | 65.9° | 175.0° |
| C4' | C3' | C2' | H5 | 117.2° | 118.7° |
| C3' | C4' | O4' | C1' | 30.4° | 40.5° |
| C4' | C3' | C2' | C1' | 31.7° | 0.0° |
| C3' | C4' | C5' | H1 | 174.5° | 55.0° |
| C3' | C4' | C5' | H2 | 53.7° | 65.0° |
| C4' | C3' | O3' | H6 | 180.0° | 180.0° |
| C4' | C3' | C2' | H7 | 149.3° | 118.8° |
| O4' | C4' | C5' | O5' | 50.6° | 69.6° |
| O4' | C4' | C3' | C2' | 38.3° | 24.0° |
| C4' | O4' | C1' | C2' | 9.7° | 40.5° |
| C4' | O4' | C1' | N1 | 132.7° | 159.3° |
| O4' | C4' | C5' | H1 | 69.0° | 170.4° |
| O4' | C4' | C5' | H2 | 170.2° | 50.4° |
| O4' | C4' | C3' | H5 | 78.7° | 94.7° |
| C4' | O4' | C1' | H8 | 107.9° | 78.3° |
| C5' | O5' | S | N3S | 60.6° | 75.0° |
| C5' | O5' | S | O2S | 54.6° | 171.4° |
| C5' | O5' | S | O1S | 176.5° | 38.6° |
| O5' | C5' | H1 | H2 | 121.2° | 120.0° |
| O5' | C5' | C4' | H4 | 171.3° | 52.7° |
| N | CA | C | H14 | 117.7° | 120.0° |
| N | CA | C | N3S | 166.7° | 160.0° |
| N | CA | C | O | 14.4° | 20.0° |
| CA | N | H11 | H12 | 120.0° | 123.9° |
| N | CA | CB | H15 | 160.8° | 55.0° |
| N | CA | CB | H16 | 41.6° | 175.0° |
| CA | C | N3S | O | 179.0° | 180.0° |
| CA | C | N3S | S | 179.0° | 180.0° |
| C | CA | N | H11 | 60.2° | 64.0° |
| C | CA | N | H12 | 59.8° | 60.0° |
| C | CA | CB | H15 | 42.1° | 65.0° |
| C | CA | CB | H16 | 77.0° | 55.0° |
| CA | C | N3S | H19 | 1.0° | 0.0° |
| C3' | C2' | C1' | O4' | 14.7° | 23.9° |
| C3' | C2' | C1' | H7 | 117.6° | 118.7° |
| C3' | C2' | C1' | N1 | 105.8° | 142.8° |
| C3' | C2' | O2' | H3 | 180.0° | 61.4° |
| C2' | C3' | C4' | H4 | 79.0° | 95.0° |
| C2' | C3' | O3' | H6 | 67.0° | 65.4° |
| C3' | C2' | C1' | H8 | 133.2° | 94.9° |
| O4' | C1' | C2' | N1 | 120.4° | 118.9° |
| O4' | C1' | C2' | H8 | 118.6° | 118.8° |
| O4' | C1' | N1 | H8 | 119.8° | 122.3° |
| O4' | C1' | N1 | C2 | 134.4° | 126.4° |
| O4' | C1' | N1 | C6 | 49.8° | 53.6° |
| C1' | O4' | C4' | H4 | 86.2° | 78.4° |
| O4' | C1' | C2' | H7 | 132.3° | 94.7° |
| C2' | C1' | N1 | H8 | 120.5° | 122.3° |
| C2' | C1' | N1 | C2 | 106.0° | 118.1° |
| C2' | C1' | N1 | C6 | 69.8° | 61.8° |
| C1' | C2' | O2' | H3 | 67.2° | 176.1° |
| C1' | C2' | C3' | H5 | 85.4° | 118.6° |
| C1' | N1 | C2 | O2 | 7.0° | 0.3° |
| C1' | N1 | C2 | C6 | 175.8° | 180.0° |
| C1' | N1 | C2 | N3 | 174.0° | 179.7° |
| C1' | N1 | C6 | C5 | 174.0° | 180.0° |
| N1 | C1' | C2' | H7 | 11.8° | 24.1° |
| C1' | N1 | C6 | H10 | 6.0° | 0.0° |
| C | N3S | S | H19 | 180.0° | 180.0° |
| C | N3S | S | O5' | 59.0° | 65.0° |
| C | N3S | S | O2S | 171.5° | 48.6° |
| C | N3S | S | O1S | 52.2° | 178.5° |
| N3S | C | CA | H14 | 49.0° | 40.0° |
| O | C | N3S | S | 0.0° | 0.0° |
| O | C | CA | H14 | 132.1° | 140.0° |
| O | C | N3S | H19 | 180.0° | 180.0° |
| N3S | S | O5' | O2S | 115.2° | 113.6° |
| N3S | S | O5' | O1S | 116.0° | 113.5° |
| N3S | S | O2S | O1S | 130.8° | 122.9° |
| O5' | S | O2S | O1S | 117.7° | 122.9° |
| S | O5' | C5' | H1 | 108.5° | 60.0° |
| S | O5' | C5' | H2 | 12.3° | 60.0° |
| O5' | S | N3S | H19 | 121.0° | 115.0° |
| O2S | S | N3S | H19 | 8.5° | 131.5° |
| O1S | S | N3S | H19 | 127.8° | 1.4° |
| O2 | C2 | N1 | N3 | 179.0° | 179.4° |
| O2 | C2 | N1 | C6 | 177.2° | 179.7° |
| O2 | C2 | N3 | C4 | 178.1° | 180.0° |
| O2 | C2 | N3 | H18 | 1.9° | 0.6° |
| C2 | N1 | C6 | C5 | 1.7° | 0.0° |
| N1 | C2 | N3 | C4 | 0.9° | 0.6° |
| C2 | N1 | C1' | H8 | 14.5° | 4.2° |
| C2 | N1 | C6 | H10 | 178.4° | 179.9° |
| N1 | C2 | N3 | H18 | 179.1° | 180.0° |
| C6 | N1 | C2 | N3 | 1.8° | 0.3° |
| N1 | C6 | C5 | H10 | 180.0° | 179.9° |
| N1 | C6 | C5 | C4 | 0.3° | 0.0° |
| C6 | N1 | C1' | H8 | 169.7° | 175.9° |
| N1 | C6 | C5 | H9 | 179.7° | 179.7° |
| C2 | N3 | C4 | H18 | 180.0° | 179.4° |
| C2 | N3 | C4 | C5 | 0.3° | 0.6° |
| C2 | N3 | C4 | O4 | 179.9° | 179.5° |
| C6 | C5 | C4 | N3 | 0.6° | 0.3° |
| C6 | C5 | C4 | H9 | 180.0° | 179.7° |
| C6 | C5 | C4 | O4 | 179.9° | 179.7° |
| N3 | C4 | C5 | O4 | 179.5° | 179.9° |
| N3 | C4 | C5 | H9 | 179.4° | 180.0° |
| C4 | C5 | C6 | H10 | 179.7° | 180.0° |
| C5 | C4 | N3 | H18 | 179.7° | 180.0° |
| O4 | C4 | C5 | H9 | 0.1° | 0.0° |
| O4 | C4 | N3 | H18 | 0.1° | 0.0° |
| H1 | C5' | C4' | H4 | 51.7° | 67.3° |
| H2 | C5' | C4' | H4 | 69.1° | 172.7° |
| H3 | O2' | C2' | H7 | 55.3° | 61.2° |
| H4 | C4' | C3' | H5 | 163.9° | 146.3° |
| H5 | C3' | O3' | H6 | 57.1° | 57.4° |
| H5 | C3' | C2' | H7 | 32.1° | 0.1° |
| H7 | C2' | C1' | H8 | 109.1° | 146.5° |
| H9 | C5 | C6 | H10 | 0.3° | 0.3° |
| H11 | N | CA | H14 | 57.1° | 56.1° |
| H12 | N | CA | H14 | 177.1° | 180.0° |
| H14 | CA | CB | H15 | 76.0° | 175.0° |
| H14 | CA | CB | H16 | 164.9° | 65.0° |
