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Summary Geometry Related PDB entries

G3P

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C1	sing	1.43Å	1.41Å
C1	C2	sing	1.53Å	1.50Å
C2	O2	sing	1.43Å	1.40Å
C2	C3	sing	1.53Å	1.56Å
C3	O1P	sing	1.43Å	1.45Å
O1P	P	sing	1.61Å	1.67Å
O4P	P	sing	1.61Å	1.53Å
O2P	P	doub	1.48Å	1.52Å
O3P	P	sing	1.61Å	1.53Å
O1	HO1	sing	0.97Å	0.95Å
C1	H11	sing	1.09Å	1.10Å
C1	H12	sing	1.09Å	1.10Å
C2	H2	sing	1.09Å	1.10Å
O2	HO2	sing	0.97Å	0.95Å
C3	H31	sing	1.09Å	1.10Å
C3	H32	sing	1.09Å	1.10Å
O3P	HOP3	sing	0.97Å	0.95Å
O4P	HOP4	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	C2	109.0°	109.5°
C1	O1	HO1	109.5°	114.0°
O1	C1	H11	109.6°	109.5°
O1	C1	H12	109.6°	109.5°
C1	C2	O2	105.5°	109.5°
C1	C2	C3	109.5°	109.5°
C2	C1	H11	109.5°	109.5°
C2	C1	H12	109.6°	109.5°
C1	C2	H2	111.4°	109.5°
O2	C2	C3	106.2°	109.5°
O2	C2	H2	113.2°	109.4°
C2	O2	HO2	109.5°	114.0°
C2	C3	O1P	111.3°	109.5°
C3	C2	H2	110.6°	109.5°
C2	C3	H31	109.0°	109.5°
C2	C3	H32	109.0°	109.4°
C3	O1P	P	121.2°	123.0°
O1P	C3	H31	109.0°	109.5°
O1P	C3	H32	109.0°	109.5°
O1P	P	O4P	110.1°	109.5°
O1P	P	O2P	108.6°	109.5°
O1P	P	O3P	111.6°	109.5°
O4P	P	O2P	106.3°	109.4°
O4P	P	O3P	107.4°	109.5°
P	O4P	HOP4	109.5°	114.0°
O2P	P	O3P	112.8°	109.5°
P	O3P	HOP3	109.5°	114.0°
H11	C1	H12	109.5°	109.5°
H31	C3	H32	109.5°	109.4°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C2	H11	119.9°	120.0°
O1	C1	C2	H12	119.9°	120.0°
O1	C1	C2	O2	103.6°	65.0°
O1	C1	C2	C3	142.4°	175.0°
O1	C1	H11	H12	120.2°	120.0°
O1	C1	C2	H2	19.6°	54.9°
C1	C2	O2	C3	116.2°	120.1°
C1	C2	O2	H2	122.1°	119.9°
C1	C2	C3	H2	123.2°	120.0°
C1	C2	C3	O1P	164.4°	175.0°
C2	C1	O1	HO1	180.0°	180.0°
C2	C1	H11	H12	120.2°	120.0°
C1	C2	O2	HO2	180.0°	60.0°
C1	C2	C3	H31	44.1°	64.9°
C1	C2	C3	H32	75.3°	55.0°
O2	C2	C3	H2	123.2°	119.9°
O2	C2	C3	O1P	50.9°	65.0°
O2	C2	C1	H11	16.3°	55.0°
O2	C2	C1	H12	136.4°	175.0°
O2	C2	C3	H31	69.4°	55.1°
O2	C2	C3	H32	171.1°	175.0°
C2	C3	O1P	H31	120.3°	120.1°
C2	C3	O1P	H32	120.3°	120.0°
C2	C3	O1P	P	170.4°	180.0°
C3	C2	C1	H11	97.7°	65.0°
C3	C2	C1	H12	22.4°	55.0°
C3	C2	O2	HO2	63.7°	60.0°
C2	C3	H31	H32	119.2°	119.9°
C3	O1P	P	O4P	177.0°	175.0°
C3	O1P	P	O2P	61.0°	55.0°
C3	O1P	P	O3P	63.9°	65.0°
O1P	C3	C2	H2	72.3°	54.9°
O1P	C3	H31	H32	119.1°	120.0°
O1P	P	O4P	O2P	117.4°	120.0°
O1P	P	O4P	O3P	121.6°	120.1°
O1P	P	O2P	O3P	124.2°	120.0°
P	O1P	C3	H31	69.3°	60.0°
P	O1P	C3	H32	50.2°	60.0°
O1P	P	O3P	HOP3	122.6°	60.0°
O1P	P	O4P	HOP4	117.4°	180.0°
O4P	P	O2P	O3P	117.4°	120.0°
O4P	P	O3P	HOP3	116.7°	60.0°
O2P	P	O3P	HOP3	0.0°	179.9°
O2P	P	O4P	HOP4	0.0°	60.0°
O3P	P	O4P	HOP4	121.0°	59.9°
HO1	O1	C1	H11	60.1°	60.0°
HO1	O1	C1	H12	60.1°	60.0°
H11	C1	C2	H2	139.6°	175.0°
H12	C1	C2	H2	100.3°	65.1°
H2	C2	O2	HO2	57.9°	180.0°
H2	C2	C3	H31	167.4°	175.0°
H2	C2	C3	H32	47.9°	65.1°

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