G0C
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
CG | SD | sing | 1.81Å | 1.82Å | |
CG | CB | sing | 1.53Å | 1.48Å | |
CA | CB | sing | 1.53Å | 1.50Å | |
CA | N | sing | 1.47Å | 1.45Å | |
SD | CE | sing | 1.81Å | 1.79Å | |
N | C4A | doub | 1.29Å | 1.32Å | |
C4A | C4 | sing | 1.48Å | 1.40Å | |
OP3 | P | doub | 1.48Å | 1.47Å | |
O3 | C3 | sing | 1.36Å | 1.35Å | |
C4 | C3 | doub | 1.40Å | 1.42Å | Aromatic |
C4 | C5 | sing | 1.40Å | 1.41Å | Aromatic |
C3 | C2 | sing | 1.39Å | 1.38Å | Aromatic |
C5A | C5 | sing | 1.51Å | 1.55Å | |
C5A | OP4 | sing | 1.43Å | 1.42Å | |
C5 | C6 | doub | 1.38Å | 1.38Å | Aromatic |
P | OP2 | sing | 1.61Å | 1.51Å | |
P | OP4 | sing | 1.61Å | 1.65Å | |
P | OP1 | sing | 1.61Å | 1.44Å | |
C2 | C2A | sing | 1.51Å | 1.50Å | |
C2 | N1 | doub | 1.32Å | 1.34Å | Aromatic |
C6 | N1 | sing | 1.32Å | 1.35Å | Aromatic |
C6 | H1 | sing | 1.08Å | 1.08Å | |
OP1 | H2 | sing | 0.97Å | 0.95Å | |
OP2 | H3 | sing | 0.97Å | 0.95Å | |
C5A | H4 | sing | 1.09Å | 1.10Å | |
C5A | H5 | sing | 1.09Å | 1.10Å | |
C2A | H6 | sing | 1.09Å | 1.10Å | |
C2A | H7 | sing | 1.09Å | 1.10Å | |
C2A | H8 | sing | 1.09Å | 1.10Å | |
O3 | H9 | sing | 0.97Å | 0.95Å | |
C4A | H10 | sing | 1.08Å | 1.08Å | |
CA | H11 | sing | 1.09Å | 1.10Å | |
CB | H12 | sing | 1.09Å | 1.10Å | |
CG | H13 | sing | 1.09Å | 1.10Å | |
CG | H14 | sing | 1.09Å | 1.10Å | |
CE | H15 | sing | 1.09Å | 1.10Å | |
CE | H16 | sing | 1.09Å | 1.10Å | |
CE | H17 | sing | 1.09Å | 1.10Å | |
CA | H18 | sing | 1.09Å | 1.10Å | |
CB | H19 | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
SD | CG | CB | 105.8° | 109.5° |
CG | SD | CE | 100.0° | 103.0° |
SD | CG | H13 | 110.4° | 109.5° |
SD | CG | H14 | 110.3° | 109.5° |
CG | CB | CA | 118.0° | 109.5° |
CG | CB | H12 | 107.3° | 109.5° |
CB | CG | H13 | 110.4° | 109.5° |
CB | CG | H14 | 110.4° | 109.5° |
CG | CB | H19 | 107.3° | 109.5° |
CB | CA | N | 121.7° | 109.5° |
CB | CA | H11 | 106.3° | 109.5° |
CA | CB | H12 | 107.3° | 109.5° |
CB | CA | H18 | 106.3° | 109.5° |
CA | CB | H19 | 107.3° | 109.5° |
CA | N | C4A | 125.4° | 120.0° |
N | CA | H11 | 106.3° | 109.5° |
N | CA | H18 | 106.3° | 109.5° |
SD | CE | H15 | 109.5° | 109.5° |
SD | CE | H16 | 109.5° | 109.5° |
SD | CE | H17 | 109.5° | 109.5° |
N | C4A | C4 | 120.9° | 120.0° |
N | C4A | H10 | 119.5° | 120.0° |
C4A | C4 | C3 | 120.6° | 120.9° |
C4A | C4 | C5 | 122.4° | 121.0° |
C4 | C4A | H10 | 119.5° | 120.0° |
OP3 | P | OP2 | 111.3° | 109.5° |
OP3 | P | OP4 | 103.1° | 109.5° |
OP3 | P | OP1 | 115.9° | 109.5° |
O3 | C3 | C4 | 121.5° | 120.6° |
O3 | C3 | C2 | 117.6° | 120.6° |
C3 | O3 | H9 | 109.5° | 114.0° |
C3 | C4 | C5 | 116.9° | 118.1° |
C4 | C3 | C2 | 120.9° | 118.8° |
C4 | C5 | C5A | 122.0° | 120.5° |
C4 | C5 | C6 | 120.6° | 119.0° |
C3 | C2 | C2A | 123.3° | 119.6° |
C3 | C2 | N1 | 119.1° | 120.8° |
C5 | C5A | OP4 | 106.3° | 109.5° |
C5A | C5 | C6 | 117.3° | 120.5° |
C5 | C5A | H4 | 110.2° | 109.5° |
C5 | C5A | H5 | 110.3° | 109.5° |
C5A | OP4 | P | 116.3° | 123.0° |
OP4 | C5A | H4 | 110.3° | 109.5° |
OP4 | C5A | H5 | 110.3° | 109.4° |
C5 | C6 | N1 | 119.5° | 121.1° |
C5 | C6 | H1 | 120.2° | 119.4° |
OP2 | P | OP4 | 105.8° | 109.5° |
OP2 | P | OP1 | 118.3° | 109.5° |
P | OP2 | H3 | 109.5° | 114.0° |
OP4 | P | OP1 | 99.8° | 109.4° |
P | OP1 | H2 | 109.5° | 114.0° |
C2A | C2 | N1 | 117.4° | 119.6° |
C2 | C2A | H6 | 109.5° | 109.5° |
C2 | C2A | H7 | 109.5° | 109.5° |
C2 | C2A | H8 | 109.5° | 109.5° |
C2 | N1 | C6 | 122.9° | 122.2° |
N1 | C6 | H1 | 120.2° | 119.5° |
H4 | C5A | H5 | 109.5° | 109.5° |
H6 | C2A | H7 | 109.5° | 109.5° |
H6 | C2A | H8 | 109.5° | 109.4° |
H7 | C2A | H8 | 109.5° | 109.5° |
H11 | CA | H18 | 109.5° | 109.4° |
H12 | CB | H19 | 109.5° | 109.5° |
H13 | CG | H14 | 109.5° | 109.5° |
H15 | CE | H16 | 109.5° | 109.4° |
H15 | CE | H17 | 109.5° | 109.5° |
H16 | CE | H17 | 109.4° | 109.4° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
SD | CG | CB | H13 | 119.4° | 120.0° |
SD | CG | CB | H14 | 119.4° | 120.0° |
SD | CG | CB | CA | 73.8° | 180.0° |
SD | CG | CB | H12 | 164.9° | 60.0° |
SD | CG | H13 | H14 | 121.6° | 120.0° |
CG | SD | CE | H15 | 180.0° | 60.1° |
CG | SD | CE | H16 | 60.0° | 180.0° |
CG | SD | CE | H17 | 60.0° | 60.0° |
SD | CG | CB | H19 | 47.4° | 60.0° |
CG | CB | CA | H12 | 121.2° | 120.0° |
CG | CB | CA | H19 | 121.2° | 120.0° |
CG | CB | CA | N | 175.4° | 180.0° |
CB | CG | SD | CE | 77.9° | 180.0° |
CG | CB | CA | H11 | 53.8° | 60.0° |
CG | CB | H12 | H19 | 116.1° | 120.0° |
CB | CG | H13 | H14 | 121.7° | 120.0° |
CG | CB | CA | H18 | 62.9° | 60.0° |
CB | CA | N | H11 | 121.7° | 120.1° |
CB | CA | N | H18 | 121.7° | 120.0° |
CB | CA | N | C4A | 2.1° | 114.9° |
CB | CA | H11 | H18 | 114.5° | 120.0° |
CA | CB | H12 | H19 | 116.1° | 120.0° |
CA | CB | CG | H13 | 45.6° | 60.0° |
CA | CB | CG | H14 | 166.8° | 60.0° |
CA | N | C4A | C4 | 172.0° | 180.0° |
CA | N | C4A | H10 | 8.0° | 0.0° |
N | CA | H11 | H18 | 114.5° | 120.0° |
N | CA | CB | H12 | 63.3° | 60.0° |
N | CA | CB | H19 | 54.2° | 60.0° |
CE | SD | CG | H13 | 162.7° | 60.0° |
CE | SD | CG | H14 | 41.6° | 60.0° |
SD | CE | H15 | H16 | 120.0° | 120.0° |
SD | CE | H15 | H17 | 120.0° | 120.1° |
SD | CE | H16 | H17 | 120.0° | 120.0° |
N | C4A | C4 | H10 | 180.0° | 179.9° |
N | C4A | C4 | C3 | 21.2° | 0.1° |
N | C4A | C4 | C5 | 161.4° | 179.7° |
C4A | N | CA | H11 | 119.6° | 125.0° |
C4A | N | CA | H18 | 123.7° | 5.1° |
C4A | C4 | C3 | O3 | 2.7° | 0.2° |
C4A | C4 | C3 | C5 | 177.5° | 179.8° |
C4A | C4 | C3 | C2 | 179.6° | 179.7° |
C4A | C4 | C5 | C5A | 2.0° | 0.3° |
C4A | C4 | C5 | C6 | 179.7° | 179.8° |
OP3 | P | OP4 | C5A | 57.2° | 55.0° |
OP3 | P | OP2 | OP4 | 111.3° | 120.0° |
OP3 | P | OP2 | OP1 | 137.9° | 120.0° |
OP3 | P | OP4 | OP1 | 119.7° | 120.0° |
OP3 | P | OP1 | H2 | 0.0° | 179.9° |
OP3 | P | OP2 | H3 | 0.0° | 60.0° |
O3 | C3 | C4 | C2 | 177.7° | 179.9° |
O3 | C3 | C4 | C5 | 179.8° | 180.0° |
O3 | C3 | C2 | C2A | 3.9° | 0.1° |
O3 | C3 | C2 | N1 | 179.8° | 179.9° |
C3 | C4 | C5 | C5A | 179.5° | 179.9° |
C3 | C4 | C5 | C6 | 2.2° | 0.0° |
C4 | C3 | C2 | C2A | 178.3° | 180.0° |
C4 | C3 | C2 | N1 | 2.4° | 0.0° |
C4 | C3 | O3 | H9 | 180.0° | 90.1° |
C3 | C4 | C4A | H10 | 158.8° | 180.0° |
C5 | C4 | C3 | C2 | 2.1° | 0.1° |
C4 | C5 | C5A | C6 | 178.4° | 180.0° |
C4 | C5 | C5A | OP4 | 70.3° | 180.0° |
C4 | C5 | C6 | N1 | 2.6° | 0.0° |
C4 | C5 | C6 | H1 | 177.4° | 180.0° |
C4 | C5 | C5A | H4 | 170.2° | 60.0° |
C4 | C5 | C5A | H5 | 49.1° | 60.0° |
C5 | C4 | C4A | H10 | 18.6° | 0.2° |
C3 | C2 | C2A | N1 | 176.0° | 180.0° |
C3 | C2 | N1 | C6 | 2.9° | 0.0° |
C3 | C2 | C2A | H6 | 176.0° | 90.0° |
C3 | C2 | C2A | H7 | 56.0° | 150.0° |
C3 | C2 | C2A | H8 | 64.0° | 30.0° |
C2 | C3 | O3 | H9 | 2.3° | 90.0° |
C5 | C5A | OP4 | H4 | 119.5° | 120.0° |
C5 | C5A | OP4 | H5 | 119.5° | 120.0° |
C5 | C5A | OP4 | P | 155.9° | 180.0° |
C5A | C5 | C6 | N1 | 179.0° | 180.0° |
C5A | C5 | C6 | H1 | 1.0° | 0.0° |
C5 | C5A | H4 | H5 | 121.5° | 120.0° |
OP4 | C5A | C5 | C6 | 111.3° | 0.0° |
C5A | OP4 | P | OP2 | 59.8° | 175.0° |
C5A | OP4 | P | OP1 | 176.9° | 65.0° |
OP4 | C5A | H4 | H5 | 121.5° | 119.9° |
C5 | C6 | N1 | C2 | 3.0° | 0.0° |
C5 | C6 | N1 | H1 | 180.0° | 180.0° |
C6 | C5 | C5A | H4 | 8.2° | 120.0° |
C6 | C5 | C5A | H5 | 129.2° | 120.0° |
OP2 | P | OP4 | OP1 | 123.3° | 120.0° |
OP2 | P | OP1 | H2 | 136.0° | 59.9° |
OP4 | P | OP1 | H2 | 109.9° | 60.1° |
OP4 | P | OP2 | H3 | 111.3° | 180.0° |
P | OP4 | C5A | H4 | 84.6° | 60.0° |
P | OP4 | C5A | H5 | 36.5° | 60.0° |
OP1 | P | OP2 | H3 | 137.9° | 60.0° |
C2A | C2 | N1 | C6 | 179.0° | 180.0° |
C2 | C2A | H6 | H7 | 120.0° | 120.0° |
C2 | C2A | H6 | H8 | 120.0° | 120.0° |
C2 | C2A | H7 | H8 | 120.0° | 120.0° |
C2 | N1 | C6 | H1 | 177.0° | 180.0° |
N1 | C2 | C2A | H6 | 0.0° | 90.0° |
N1 | C2 | C2A | H7 | 120.0° | 30.0° |
N1 | C2 | C2A | H8 | 120.0° | 150.0° |
H6 | C2A | H7 | H8 | 120.0° | 120.0° |
H11 | CA | CB | H12 | 175.0° | 180.0° |
H11 | CA | CB | H19 | 67.5° | 60.0° |
H12 | CB | CG | H13 | 75.7° | 180.0° |
H12 | CB | CG | H14 | 45.5° | 60.0° |
H12 | CB | CA | H18 | 58.3° | 60.0° |
H13 | CG | CB | H19 | 166.8° | 60.0° |
H14 | CG | CB | H19 | 72.0° | NaN° |
H15 | CE | H16 | H17 | 120.0° | 120.0° |
H18 | CA | CB | H19 | 175.9° | 180.0° |