English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

FV1

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O	C1	sing	1.43Å	1.46Å
O	C2	sing	1.43Å	1.41Å
P	O3P	sing	1.61Å	1.57Å
P	C1	sing	1.82Å	1.80Å
V	O2P	sing	1.84Å	1.94Å
V	O3	doub	1.58Å	2.04Å
C1	C2	sing	1.53Å	1.55Å
C1	H1	sing	1.09Å	1.10Å
O1	V	sing	1.84Å	1.93Å
O1	HO1	sing	0.97Å	0.95Å
C2	H2	sing	1.09Å	1.10Å
O2	V	sing	1.84Å	1.92Å
O2	HO2	sing	0.97Å	0.95Å
C3	C2	sing	1.53Å	1.55Å
C3	H3	sing	1.09Å	1.10Å
C3	H3A	sing	1.09Å	1.10Å
C3	H3B	sing	1.09Å	1.10Å
O1P	P	doub	1.48Å	1.52Å
O2P	P	sing	1.61Å	1.53Å
O3P	HO3P	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C1	O	C2	65.2°	64.7°
O	C1	P	119.3°	117.7°
O	C1	C2	55.5°	57.6°
O	C1	H1	139.6°	117.8°
O	C2	C1	59.2°	57.7°
O	C2	H2	134.2°	117.7°
O	C2	C3	125.1°	117.8°
O3P	P	C1	105.5°	109.5°
O3P	P	O1P	117.0°	109.5°
O3P	P	O2P	110.5°	109.4°
P	O3P	HO3P	109.5°	114.0°
P	C1	C2	125.2°	117.8°
P	C1	H1	87.3°	115.7°
C1	P	O1P	110.2°	109.5°
C1	P	O2P	107.3°	109.5°
O2P	V	O3	127.0°	109.5°
O2P	V	O1	94.1°	109.5°
O2P	V	O2	98.1°	109.5°
V	O2P	P	142.3°	114.0°
O3	V	O1	113.4°	109.5°
O3	V	O2	108.5°	109.5°
C2	C1	H1	134.4°	117.8°
C1	C2	H2	136.6°	117.8°
C1	C2	C3	122.4°	117.8°
V	O1	HO1	109.5°	114.0°
O1	V	O2	114.8°	109.5°
H2	C2	C3	85.3°	115.7°
V	O2	HO2	109.5°	114.0°
C2	C3	H3	109.5°	109.4°
C2	C3	H3A	109.5°	109.5°
C2	C3	H3B	109.5°	109.5°
H3	C3	H3A	109.5°	109.4°
H3	C3	H3B	109.5°	109.5°
H3A	C3	H3B	109.5°	109.5°
O1P	P	O2P	106.0°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O	C1	P	O3P	163.5°	128.6°
O	C1	P	C2	66.5°	66.0°
O	C1	P	H1	148.0°	146.9°
O	C1	C2	H1	128.3°	106.8°
C1	O	C2	H2	127.0°	106.9°
O	C1	C2	C3	114.6°	106.8°
O	C1	P	O1P	36.3°	8.6°
O	C1	P	O2P	78.7°	111.4°
O	C2	H2	C3	136.5°	146.9°
O	C2	C3	H3	180.0°	8.7°
O	C2	C3	H3A	60.0°	128.6°
O	C2	C3	H3B	60.0°	111.3°
O3P	P	C1	O1P	127.2°	120.0°
O3P	P	C1	O2P	117.8°	119.9°
O3P	P	O2P	V	17.2°	60.0°
O3P	P	C1	C2	97.0°	62.6°
O3P	P	C1	H1	48.5°	84.4°
O3P	P	O1P	O2P	123.7°	120.0°
C1	P	O2P	V	97.3°	180.0°
P	C1	C2	H1	127.7°	146.4°
P	C1	C2	H2	132.5°	146.4°
P	C1	C2	C3	10.6°	0.0°
C1	P	O1P	O2P	115.8°	120.0°
C1	P	O3P	HO3P	123.0°	59.9°
O2P	V	O3	O1	115.2°	120.0°
O2P	V	O3	O2	116.0°	120.0°
O2P	V	O1	O2	100.9°	120.0°
O2P	V	O1	HO1	180.0°	60.0°
O2P	V	O2	HO2	180.0°	180.0°
V	O2P	P	O1P	144.9°	60.0°
O3	V	O1	O2	125.5°	120.0°
O3	V	O1	HO1	46.4°	180.0°
O3	V	O2	HO2	46.5°	60.0°
O3	V	O2P	P	11.3°	60.0°
C1	C2	H2	C3	134.0°	147.0°
C1	C2	C3	H3	107.1°	57.4°
C1	C2	C3	H3A	132.9°	62.5°
C1	C2	C3	H3B	12.9°	177.4°
C2	C1	P	O1P	30.2°	57.4°
C2	C1	P	O2P	145.2°	177.4°
H1	C1	C2	H2	4.9°	0.0°
H1	C1	C2	C3	117.1°	146.3°
H1	C1	P	O1P	175.7°	155.5°
H1	C1	P	O2P	69.3°	35.5°
O1	V	O2	HO2	81.6°	60.0°
O1	V	O2P	P	134.9°	60.0°
HO1	O1	V	O2	79.1°	60.0°
H2	C2	C3	H3	37.1°	155.6°
H2	C2	C3	H3A	82.9°	84.5°
H2	C2	C3	H3B	157.1°	35.6°
O2	V	O2P	P	109.3°	180.0°
C2	C3	H3	H3A	120.0°	119.9°
C2	C3	H3	H3B	120.0°	120.0°
C2	C3	H3A	H3B	120.0°	120.0°
H3	C3	H3A	H3B	120.0°	120.0°
O1P	P	O3P	HO3P	0.0°	180.0°
O2P	P	O3P	HO3P	121.4°	60.0°

224931

PDB entries from 2024-09-11

PDB statistics

PDBj update info

Contact PDBj

numon