English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

FPL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C	O	sing	1.36Å	1.37Å
C	C1	doub	1.39Å	1.39Å	Aromatic
C	C5	sing	1.39Å	1.40Å	Aromatic
F	C2	sing	1.35Å	1.36Å
C1	C2	sing	1.38Å	1.37Å	Aromatic
O1	C5	sing	1.36Å	1.42Å
O1	C6	sing	1.36Å	1.40Å
C2	C3	doub	1.38Å	1.37Å	Aromatic
C3	C4	sing	1.38Å	1.38Å	Aromatic
C4	C5	doub	1.39Å	1.39Å	Aromatic
C6	C7	doub	1.39Å	1.40Å	Aromatic
C6	C11	sing	1.39Å	1.39Å	Aromatic
C7	C8	sing	1.38Å	1.39Å	Aromatic
C8	C9	doub	1.38Å	1.38Å	Aromatic
C9	C10	sing	1.38Å	1.39Å	Aromatic
C10	C11	doub	1.38Å	1.39Å	Aromatic
O	HO	sing	0.97Å	0.95Å
C1	H1	sing	1.08Å	1.08Å
C3	H3	sing	1.08Å	1.08Å
C4	H4	sing	1.08Å	1.08Å
C7	H7	sing	1.08Å	1.08Å
C8	H8	sing	1.08Å	1.08Å
C9	H9	sing	1.08Å	1.08Å
C10	H10	sing	1.08Å	1.08Å
C11	H11	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O	C	C1	120.6°	120.0°
O	C	C5	119.3°	120.1°
C	O	HO	109.5°	114.0°
C1	C	C5	119.8°	119.9°
C	C1	C2	117.9°	120.0°
C	C1	H1	121.1°	120.0°
C	C5	O1	115.6°	120.1°
C	C5	C4	120.1°	119.9°
F	C2	C1	117.3°	120.0°
F	C2	C3	118.7°	119.9°
C1	C2	C3	123.8°	120.1°
C2	C1	H1	121.1°	120.0°
C5	O1	C6	122.2°	118.1°
O1	C5	C4	124.2°	120.0°
O1	C6	C7	121.8°	120.1°
O1	C6	C11	117.7°	120.0°
C2	C3	C4	118.3°	120.1°
C2	C3	H3	120.9°	119.9°
C3	C4	C5	120.1°	120.0°
C4	C3	H3	120.9°	119.9°
C3	C4	H4	120.0°	120.0°
C5	C4	H4	120.0°	120.0°
C7	C6	C11	120.6°	119.9°
C6	C7	C8	119.5°	119.9°
C6	C7	H7	120.2°	120.1°
C6	C11	C10	119.2°	119.9°
C6	C11	H11	120.4°	120.1°
C7	C8	C9	120.2°	120.1°
C8	C7	H7	120.3°	120.0°
C7	C8	H8	119.9°	119.9°
C8	C9	C10	119.8°	120.1°
C9	C8	H8	119.9°	120.0°
C8	C9	H9	120.1°	119.9°
C9	C10	C11	120.8°	120.1°
C10	C9	H9	120.1°	120.0°
C9	C10	H10	119.6°	119.9°
C11	C10	H10	119.6°	120.0°
C10	C11	H11	120.4°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O	C	C1	C5	174.7°	179.7°
O	C	C1	C2	171.8°	180.0°
O	C	C5	O1	10.0°	0.1°
O	C	C5	C4	173.3°	179.7°
O	C	C1	H1	8.2°	0.1°
C	C1	C2	F	171.0°	179.9°
C	C1	C2	H1	180.0°	179.9°
C1	C	C5	O1	175.2°	179.8°
C	C1	C2	C3	3.5°	0.0°
C1	C	C5	C4	1.4°	0.6°
C1	C	O	HO	180.0°	90.0°
C5	C	C1	C2	2.8°	0.3°
C	C5	O1	C4	176.5°	179.7°
C	C5	O1	C6	77.7°	179.8°
C	C5	C4	C3	0.4°	0.6°
C5	C	O	HO	5.3°	90.3°
C5	C	C1	H1	177.2°	179.8°
C	C5	C4	H4	179.6°	179.7°
F	C2	C1	C3	174.5°	179.9°
F	C2	C3	C4	172.0°	180.0°
F	C2	C1	H1	8.9°	0.0°
F	C2	C3	H3	8.0°	0.1°
C1	C2	C3	C4	2.5°	0.0°
C1	C2	C3	H3	177.5°	180.0°
O1	C5	C4	C3	176.0°	179.8°
C5	O1	C6	C7	4.8°	90.0°
C5	O1	C6	C11	176.3°	90.2°
O1	C5	C4	H4	4.0°	0.0°
C6	O1	C5	C4	98.8°	0.6°
O1	C6	C7	C11	178.9°	179.8°
O1	C6	C7	C8	178.7°	180.0°
O1	C6	C11	C10	178.7°	179.7°
O1	C6	C7	H7	1.3°	0.0°
O1	C6	C11	H11	1.2°	0.0°
C2	C3	C4	H3	180.0°	180.0°
C2	C3	C4	C5	0.8°	0.3°
C3	C2	C1	H1	176.6°	179.9°
C2	C3	C4	H4	179.2°	180.0°
C3	C4	C5	H4	180.0°	179.7°
C5	C4	C3	H3	179.2°	179.7°
C6	C7	C8	H7	180.0°	180.0°
C6	C7	C8	C9	0.0°	0.1°
C7	C6	C11	C10	0.2°	0.6°
C6	C7	C8	H8	180.0°	180.0°
C7	C6	C11	H11	179.8°	179.8°
C11	C6	C7	C8	0.2°	0.2°
C6	C11	C10	C9	0.0°	0.6°
C6	C11	C10	H11	180.0°	179.7°
C11	C6	C7	H7	179.8°	179.8°
C6	C11	C10	H10	180.0°	179.7°
C7	C8	C9	H8	180.0°	179.9°
C7	C8	C9	C10	0.3°	0.0°
C7	C8	C9	H9	179.7°	179.9°
C8	C9	C10	H9	180.0°	179.9°
C8	C9	C10	C11	0.3°	0.3°
C9	C8	C7	H7	179.9°	179.9°
C8	C9	C10	H10	179.7°	180.0°
C9	C10	C11	H10	180.0°	179.7°
C10	C9	C8	H8	179.7°	179.9°
C9	C10	C11	H11	180.0°	179.7°
C11	C10	C9	H9	179.7°	179.7°
H3	C3	C4	H4	0.8°	0.0°
H7	C7	C8	H8	0.0°	0.0°
H8	C8	C9	H9	0.3°	0.0°
H9	C9	C10	H10	0.3°	0.1°
H10	C10	C11	H11	0.0°	0.1°

218853

PDB entries from 2024-04-24

PDB statistics

PDBj update info

Contact PDBj

numon