F3H
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OP3 | P | doub | 1.48Å | 1.57Å | |
OP1 | P | sing | 1.61Å | 1.61Å | |
P | O5' | sing | 1.61Å | 1.57Å | |
P | OP2 | sing | 1.61Å | 1.59Å | |
C1' | N1 | sing | 1.47Å | 1.47Å | |
N1 | C6 | sing | 1.37Å | 1.36Å | |
N1 | C2 | sing | 1.35Å | 1.39Å | |
C2 | O2 | doub | 1.22Å | 1.32Å | |
C2 | N3 | sing | 1.35Å | 1.34Å | |
N3 | C4 | sing | 1.35Å | 1.36Å | |
N3 | HN3 | sing | 0.97Å | 1.00Å | |
C5 | C4 | sing | 1.42Å | 1.41Å | |
C4 | O4 | doub | 1.22Å | 1.30Å | |
C6 | C5 | doub | 1.35Å | 1.38Å | |
C5 | C5M | sing | 1.51Å | 1.51Å | |
C6 | H6 | sing | 1.08Å | 1.08Å | |
C6' | C1' | sing | 1.53Å | 1.51Å | |
C1' | C2' | sing | 1.53Å | 1.52Å | |
C1' | H1' | sing | 1.09Å | 1.10Å | |
F2' | C2' | sing | 1.40Å | 1.36Å | |
C3' | C2' | sing | 1.53Å | 1.53Å | |
C2' | H2' | sing | 1.09Å | 1.10Å | |
C4' | C3' | sing | 1.53Å | 1.54Å | |
C3' | O3' | sing | 1.43Å | 1.44Å | |
C3' | H3' | sing | 1.09Å | 1.10Å | |
O3' | HO3' | sing | 0.97Å | 0.95Å | |
C5' | C4' | sing | 1.53Å | 1.51Å | |
C4' | O4' | sing | 1.43Å | 1.43Å | |
C4' | H4' | sing | 1.09Å | 1.10Å | |
O4' | C6' | sing | 1.43Å | 1.41Å | |
C5' | O5' | sing | 1.43Å | 1.40Å | |
C5' | H5' | sing | 1.09Å | 1.10Å | |
C5' | H5'A | sing | 1.09Å | 1.10Å | |
C5M | H5M | sing | 1.09Å | 1.10Å | |
C5M | H5MA | sing | 1.09Å | 1.10Å | |
C5M | H5MB | sing | 1.09Å | 1.10Å | |
C6' | H6' | sing | 1.09Å | 1.10Å | |
C6' | H6'A | sing | 1.09Å | 1.10Å | |
OP1 | HOP1 | sing | 0.97Å | 0.95Å | |
OP2 | HOP2 | sing | 0.97Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OP3 | P | OP1 | 106.2° | 109.5° |
OP3 | P | O5' | 108.1° | 109.4° |
OP3 | P | OP2 | 110.5° | 109.5° |
OP1 | P | O5' | 107.9° | 109.5° |
OP1 | P | OP2 | 115.3° | 109.5° |
P | OP1 | HOP1 | 109.5° | 114.0° |
O5' | P | OP2 | 108.6° | 109.4° |
P | O5' | C5' | 118.6° | 123.1° |
P | OP2 | HOP2 | 109.5° | 114.0° |
C1' | N1 | C6 | 122.3° | 119.7° |
C1' | N1 | C2 | 116.4° | 119.6° |
N1 | C1' | C6' | 115.1° | 109.5° |
N1 | C1' | C2' | 111.1° | 109.5° |
N1 | C1' | H1' | 104.5° | 109.5° |
C6 | N1 | C2 | 121.1° | 120.6° |
N1 | C6 | C5 | 120.6° | 119.7° |
N1 | C6 | H6 | 119.7° | 120.2° |
N1 | C2 | O2 | 122.8° | 119.6° |
N1 | C2 | N3 | 119.2° | 120.9° |
O2 | C2 | N3 | 118.0° | 119.5° |
C2 | N3 | C4 | 120.6° | 120.3° |
C2 | N3 | HN3 | 119.7° | 119.8° |
C4 | N3 | HN3 | 119.7° | 119.9° |
N3 | C4 | C5 | 121.6° | 119.4° |
N3 | C4 | O4 | 116.9° | 120.3° |
C5 | C4 | O4 | 121.5° | 120.3° |
C4 | C5 | C6 | 116.9° | 119.1° |
C4 | C5 | C5M | 120.7° | 120.5° |
C6 | C5 | C5M | 122.5° | 120.4° |
C5 | C6 | H6 | 119.7° | 120.1° |
C5 | C5M | H5M | 109.5° | 109.5° |
C5 | C5M | H5MA | 109.5° | 109.5° |
C5 | C5M | H5MB | 109.5° | 109.5° |
C6' | C1' | C2' | 110.1° | 109.2° |
C6' | C1' | H1' | 105.6° | 109.5° |
C1' | C6' | O4' | 108.1° | 109.4° |
C1' | C6' | H6' | 109.9° | 109.5° |
C1' | C6' | H6'A | 109.9° | 109.5° |
C2' | C1' | H1' | 110.1° | 109.6° |
C1' | C2' | F2' | 105.9° | 109.5° |
C1' | C2' | C3' | 111.4° | 109.0° |
C1' | C2' | H2' | 110.1° | 109.5° |
F2' | C2' | C3' | 108.0° | 109.6° |
F2' | C2' | H2' | 113.3° | 109.6° |
C3' | C2' | H2' | 108.1° | 109.6° |
C2' | C3' | C4' | 109.8° | 109.2° |
C2' | C3' | O3' | 108.3° | 109.5° |
C2' | C3' | H3' | 110.0° | 109.5° |
C4' | C3' | O3' | 109.4° | 109.5° |
C4' | C3' | H3' | 108.9° | 109.6° |
C3' | C4' | C5' | 109.6° | 109.5° |
C3' | C4' | O4' | 107.2° | 109.4° |
C3' | C4' | H4' | 110.4° | 109.5° |
O3' | C3' | H3' | 110.4° | 109.5° |
C3' | O3' | HO3' | 109.5° | 114.0° |
C5' | C4' | O4' | 108.3° | 109.5° |
C5' | C4' | H4' | 109.4° | 109.5° |
C4' | C5' | O5' | 108.0° | 109.5° |
C4' | C5' | H5' | 110.0° | 109.4° |
C4' | C5' | H5'A | 110.0° | 109.5° |
O4' | C4' | H4' | 111.8° | 109.5° |
C4' | O4' | C6' | 114.9° | 114.1° |
O4' | C6' | H6' | 109.9° | 109.4° |
O4' | C6' | H6'A | 109.9° | 109.5° |
O5' | C5' | H5' | 110.0° | 109.5° |
O5' | C5' | H5'A | 110.0° | 109.5° |
H5' | C5' | H5'A | 108.9° | 109.5° |
H5M | C5M | H5MA | 109.4° | 109.4° |
H5M | C5M | H5MB | 109.5° | 109.5° |
H5MA | C5M | H5MB | 109.5° | 109.4° |
H6' | C6' | H6'A | 109.0° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OP3 | P | OP1 | O5' | 115.6° | 120.0° |
OP3 | P | OP1 | OP2 | 122.7° | 120.0° |
OP3 | P | O5' | OP2 | 119.9° | 119.9° |
OP3 | P | O5' | C5' | 69.1° | 54.9° |
OP3 | P | OP1 | HOP1 | 0.0° | 60.0° |
OP3 | P | OP2 | HOP2 | 0.0° | 180.0° |
OP1 | P | O5' | OP2 | 125.7° | 120.0° |
OP1 | P | O5' | C5' | 45.3° | 175.0° |
OP1 | P | OP2 | HOP2 | 120.4° | 59.9° |
P | O5' | C5' | C4' | 160.0° | 180.0° |
P | O5' | C5' | H5' | 40.0° | 60.1° |
P | O5' | C5' | H5'A | 80.0° | 60.0° |
O5' | P | OP1 | HOP1 | 115.6° | 180.0° |
O5' | P | OP2 | HOP2 | 118.4° | 60.1° |
OP2 | P | O5' | C5' | 171.0° | 65.0° |
OP2 | P | OP1 | HOP1 | 122.8° | 60.0° |
C1' | N1 | C6 | C2 | 175.8° | 179.7° |
C1' | N1 | C2 | O2 | 1.8° | 0.3° |
C1' | N1 | C2 | N3 | 177.4° | 179.8° |
C1' | N1 | C6 | C5 | 175.2° | 179.8° |
C1' | N1 | C6 | H6 | 4.7° | 0.3° |
N1 | C1' | C6' | C2' | 126.5° | 119.9° |
N1 | C1' | C6' | H1' | 114.7° | 120.1° |
N1 | C1' | C2' | H1' | 115.3° | 120.2° |
N1 | C1' | C2' | F2' | 166.9° | 177.2° |
N1 | C1' | C2' | C3' | 75.9° | 62.9° |
N1 | C1' | C2' | H2' | 44.0° | 57.0° |
N1 | C1' | C6' | O4' | 69.8° | 62.3° |
N1 | C1' | C6' | H6' | 50.3° | 57.6° |
N1 | C1' | C6' | H6'A | 170.3° | 177.7° |
C6 | N1 | C2 | O2 | 177.8° | 180.0° |
C6 | N1 | C2 | N3 | 1.4° | 0.0° |
N1 | C6 | C5 | C4 | 2.7° | 0.1° |
N1 | C6 | C5 | H6 | 180.0° | 180.0° |
N1 | C6 | C5 | C5M | 177.4° | 180.0° |
C6 | N1 | C1' | C6' | 46.7° | 3.3° |
C6 | N1 | C1' | C2' | 79.3° | 116.4° |
C6 | N1 | C1' | H1' | 162.1° | 123.4° |
N1 | C2 | O2 | N3 | 179.2° | 179.9° |
N1 | C2 | N3 | C4 | 0.9° | 0.1° |
N1 | C2 | N3 | HN3 | 179.1° | 180.0° |
C2 | N1 | C6 | C5 | 0.5° | 0.0° |
C2 | N1 | C6 | H6 | 179.5° | 180.0° |
C2 | N1 | C1' | C6' | 137.3° | 176.5° |
C2 | N1 | C1' | C2' | 96.7° | 63.9° |
C2 | N1 | C1' | H1' | 22.0° | 56.3° |
O2 | C2 | N3 | C4 | 178.3° | 180.0° |
O2 | C2 | N3 | HN3 | 1.7° | 0.1° |
C2 | N3 | C4 | HN3 | 180.0° | 179.9° |
C2 | N3 | C4 | C5 | 1.3° | 0.1° |
C2 | N3 | C4 | O4 | 179.2° | 179.9° |
N3 | C4 | C5 | O4 | 177.8° | 180.0° |
N3 | C4 | C5 | C6 | 3.1° | 0.1° |
N3 | C4 | C5 | C5M | 176.9° | 180.0° |
HN3 | N3 | C4 | C5 | 178.7° | 180.0° |
HN3 | N3 | C4 | O4 | 0.8° | 0.0° |
C4 | C5 | C6 | C5M | 180.0° | 179.9° |
C4 | C5 | C6 | H6 | 177.4° | 179.9° |
C4 | C5 | C5M | H5M | 180.0° | 0.0° |
C4 | C5 | C5M | H5MA | 60.0° | 120.0° |
C4 | C5 | C5M | H5MB | 60.0° | 120.1° |
O4 | C4 | C5 | C6 | 179.1° | 179.9° |
O4 | C4 | C5 | C5M | 0.8° | 0.0° |
C6 | C5 | C5M | H5M | 0.0° | 180.0° |
C6 | C5 | C5M | H5MA | 120.0° | 59.9° |
C6 | C5 | C5M | H5MB | 120.0° | 60.0° |
C5M | C5 | C6 | H6 | 2.6° | 0.0° |
C5 | C5M | H5M | H5MA | 120.0° | 120.1° |
C5 | C5M | H5M | H5MB | 120.0° | 120.0° |
C5 | C5M | H5MA | H5MB | 120.0° | 120.0° |
C6' | C1' | C2' | H1' | 116.0° | 120.0° |
C6' | C1' | C2' | F2' | 64.4° | 63.0° |
C6' | C1' | C2' | C3' | 52.8° | 57.0° |
C6' | C1' | C2' | H2' | 172.7° | 176.9° |
C1' | C6' | O4' | C4' | 65.6° | 61.2° |
C1' | C6' | O4' | H6' | 120.0° | 120.0° |
C1' | C6' | O4' | H6'A | 120.0° | 120.0° |
C1' | C6' | H6' | H6'A | 120.6° | 120.1° |
C1' | C2' | F2' | C3' | 119.4° | 119.6° |
C1' | C2' | F2' | H2' | 120.8° | 120.1° |
C1' | C2' | C3' | H2' | 121.1° | 119.8° |
C1' | C2' | C3' | C4' | 52.2° | 57.0° |
C1' | C2' | C3' | O3' | 171.6° | 176.9° |
C1' | C2' | C3' | H3' | 67.6° | 63.0° |
C2' | C1' | C6' | O4' | 56.7° | 57.6° |
C2' | C1' | C6' | H6' | 176.7° | 177.5° |
C2' | C1' | C6' | H6'A | 63.3° | 62.4° |
H1' | C1' | C2' | F2' | 51.6° | 57.0° |
H1' | C1' | C2' | C3' | 168.8° | 176.9° |
H1' | C1' | C2' | H2' | 71.3° | 63.2° |
H1' | C1' | C6' | O4' | 175.5° | 177.6° |
H1' | C1' | C6' | H6' | 64.5° | 62.5° |
H1' | C1' | C6' | H6'A | 55.5° | 57.6° |
F2' | C2' | C3' | H2' | 123.0° | 120.3° |
F2' | C2' | C3' | C4' | 63.7° | 62.9° |
F2' | C2' | C3' | O3' | 55.8° | 57.0° |
F2' | C2' | C3' | H3' | 176.5° | 177.1° |
C2' | C3' | C4' | O3' | 118.8° | 119.9° |
C2' | C3' | C4' | H3' | 120.5° | 119.9° |
C2' | C3' | O3' | H3' | 120.5° | 120.1° |
C2' | C3' | O3' | HO3' | 180.0° | 60.0° |
C2' | C3' | C4' | C5' | 172.2° | 177.6° |
C2' | C3' | C4' | O4' | 54.9° | 57.6° |
C2' | C3' | C4' | H4' | 67.1° | 62.4° |
H2' | C2' | C3' | C4' | 173.3° | 176.8° |
H2' | C2' | C3' | O3' | 67.2° | 63.3° |
H2' | C2' | C3' | H3' | 53.5° | 56.9° |
C4' | C3' | O3' | H3' | 119.8° | 120.2° |
C4' | C3' | O3' | HO3' | 60.3° | 179.7° |
C3' | C4' | C5' | O4' | 116.7° | 119.9° |
C3' | C4' | C5' | H4' | 121.3° | 120.0° |
C3' | C4' | O4' | H4' | 121.2° | 120.0° |
C3' | C4' | O4' | C6' | 64.6° | 61.2° |
C3' | C4' | C5' | O5' | 55.8° | 175.0° |
C3' | C4' | C5' | H5' | 175.9° | 55.0° |
C3' | C4' | C5' | H5'A | 64.2° | 65.0° |
O3' | C3' | C4' | C5' | 69.0° | 62.5° |
O3' | C3' | C4' | O4' | 173.7° | 177.5° |
O3' | C3' | C4' | H4' | 51.6° | 57.5° |
H3' | C3' | O3' | HO3' | 59.5° | 60.1° |
H3' | C3' | C4' | C5' | 51.7° | 57.7° |
H3' | C3' | C4' | O4' | 65.6° | 62.3° |
H3' | C3' | C4' | H4' | 172.4° | 177.7° |
C5' | C4' | O4' | H4' | 120.6° | 120.1° |
C5' | C4' | O4' | C6' | 177.2° | 178.9° |
C4' | C5' | O5' | H5' | 120.0° | 120.0° |
C4' | C5' | O5' | H5'A | 120.0° | 120.0° |
C4' | C5' | H5' | H5'A | 120.6° | 120.0° |
O4' | C4' | C5' | O5' | 60.8° | 65.1° |
O4' | C4' | C5' | H5' | 59.2° | 174.9° |
O4' | C4' | C5' | H5'A | 179.2° | 54.9° |
C4' | O4' | C6' | H6' | 174.3° | 178.8° |
C4' | O4' | C6' | H6'A | 54.4° | 58.9° |
H4' | C4' | O4' | C6' | 56.6° | 58.8° |
H4' | C4' | C5' | O5' | 177.1° | 55.0° |
H4' | C4' | C5' | H5' | 62.9° | 65.0° |
H4' | C4' | C5' | H5'A | 57.1° | 175.0° |
O4' | C6' | H6' | H6'A | 120.5° | 120.0° |
O5' | C5' | H5' | H5'A | 120.6° | 120.0° |
H5M | C5M | H5MA | H5MB | 120.0° | 119.9° |