EDC
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | OP3 | sing | 1.61Å | 1.59Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| OP1 | P | doub | 1.48Å | 1.52Å | |
| O5' | P | sing | 1.61Å | 1.62Å | |
| P | OP2 | sing | 1.61Å | 1.51Å | |
| C2 | N1 | sing | 1.34Å | 1.41Å | |
| N1 | C1' | sing | 1.47Å | 1.48Å | |
| N1 | C6 | sing | 1.37Å | 1.35Å | |
| O2 | C2 | doub | 1.22Å | 1.25Å | |
| N3 | C2 | sing | 1.34Å | 1.35Å | |
| C8 | N3 | sing | 1.37Å | 1.34Å | Aromatic |
| N3 | C4 | sing | 1.37Å | 1.35Å | Aromatic |
| N4 | C4 | doub | 1.32Å | 1.34Å | Aromatic |
| C4 | C5 | sing | 1.47Å | 1.39Å | |
| C7 | N4 | sing | 1.34Å | 1.35Å | Aromatic |
| C5 | C6 | doub | 1.35Å | 1.39Å | |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C8 | C7 | doub | 1.35Å | 1.38Å | Aromatic |
| C7 | H7 | sing | 1.08Å | 1.08Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| C1' | C2' | sing | 1.54Å | 1.53Å | |
| C1' | O4' | sing | 1.44Å | 1.44Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'' | sing | 1.09Å | 1.10Å | |
| O3' | C3' | sing | 1.43Å | 1.43Å | |
| C3' | C4' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å | |
| O4' | C4' | sing | 1.44Å | 1.43Å | |
| C4' | C5' | sing | 1.53Å | 1.54Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'' | sing | 1.09Å | 1.10Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 109.5° | 114.0° |
| OP3 | P | OP1 | 106.1° | 109.5° |
| OP3 | P | O5' | 102.7° | 109.5° |
| OP3 | P | OP2 | 111.8° | 109.5° |
| OP1 | P | O5' | 105.6° | 109.5° |
| OP1 | P | OP2 | 121.1° | 109.5° |
| O5' | P | OP2 | 107.9° | 109.5° |
| P | O5' | C5' | 122.4° | 123.0° |
| P | OP2 | HOP2 | 109.5° | 114.0° |
| C2 | N1 | C1' | 120.1° | 119.2° |
| C2 | N1 | C6 | 118.8° | 121.6° |
| N1 | C2 | O2 | 119.6° | 119.3° |
| N1 | C2 | N3 | 120.5° | 121.4° |
| C1' | N1 | C6 | 121.1° | 119.2° |
| N1 | C1' | C2' | 114.5° | 109.9° |
| N1 | C1' | O4' | 110.5° | 109.8° |
| N1 | C1' | H1' | 108.2° | 109.9° |
| N1 | C6 | C5 | 120.7° | 120.0° |
| N1 | C6 | H6 | 119.7° | 120.0° |
| O2 | C2 | N3 | 119.9° | 119.3° |
| C2 | N3 | C8 | 131.2° | 133.2° |
| C2 | N3 | C4 | 120.9° | 120.0° |
| C8 | N3 | C4 | 107.9° | 106.8° |
| N3 | C8 | C7 | 108.0° | 107.1° |
| N3 | C8 | H8 | 126.0° | 126.5° |
| N3 | C4 | N4 | 108.7° | 108.2° |
| N3 | C4 | C5 | 120.1° | 118.7° |
| N4 | C4 | C5 | 131.2° | 133.1° |
| C4 | N4 | C7 | 108.5° | 109.3° |
| C4 | C5 | C6 | 119.1° | 118.3° |
| C4 | C5 | H5 | 120.5° | 120.8° |
| N4 | C7 | C8 | 106.8° | 108.6° |
| N4 | C7 | H7 | 126.6° | 125.6° |
| C6 | C5 | H5 | 120.5° | 120.8° |
| C5 | C6 | H6 | 119.7° | 120.0° |
| C8 | C7 | H7 | 126.6° | 125.7° |
| C7 | C8 | H8 | 126.0° | 126.4° |
| C2' | C1' | O4' | 107.3° | 107.3° |
| C2' | C1' | H1' | 107.5° | 109.9° |
| C1' | C2' | C3' | 103.9° | 104.1° |
| C1' | C2' | H2' | 110.8° | 110.5° |
| C1' | C2' | H2'' | 110.8° | 110.5° |
| O4' | C1' | H1' | 108.6° | 110.0° |
| C1' | O4' | C4' | 111.1° | 107.0° |
| C3' | C2' | H2' | 110.8° | 110.5° |
| C3' | C2' | H2'' | 110.8° | 110.5° |
| C2' | C3' | O3' | 107.6° | 110.9° |
| C2' | C3' | C4' | 105.3° | 102.1° |
| C2' | C3' | H3' | 111.0° | 110.9° |
| H2' | C2' | H2'' | 109.5° | 110.6° |
| O3' | C3' | C4' | 109.3° | 110.9° |
| O3' | C3' | H3' | 112.3° | 110.9° |
| C3' | O3' | HO3' | 109.5° | 114.0° |
| C4' | C3' | H3' | 111.0° | 110.9° |
| C3' | C4' | O4' | 104.7° | 103.5° |
| C3' | C4' | C5' | 113.4° | 110.6° |
| C3' | C4' | H4' | 108.9° | 110.6° |
| O4' | C4' | C5' | 110.9° | 110.6° |
| O4' | C4' | H4' | 110.2° | 110.7° |
| C5' | C4' | H4' | 108.7° | 110.6° |
| C4' | C5' | O5' | 111.6° | 109.5° |
| C4' | C5' | H5' | 108.9° | 109.4° |
| C4' | C5' | H5'' | 108.9° | 109.4° |
| O5' | C5' | H5' | 108.9° | 109.5° |
| O5' | C5' | H5'' | 108.9° | 109.5° |
| H5' | C5' | H5'' | 109.5° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | O5' | 108.6° | 120.0° |
| OP3 | P | OP1 | OP2 | 128.7° | 120.0° |
| OP3 | P | O5' | OP2 | 118.2° | 120.0° |
| OP3 | P | O5' | C5' | 68.1° | 175.0° |
| OP3 | P | OP2 | HOP2 | 126.1° | 60.0° |
| HOP3 | OP3 | P | OP1 | 0.0° | 60.0° |
| HOP3 | OP3 | P | O5' | 110.7° | 180.0° |
| HOP3 | OP3 | P | OP2 | 133.9° | 60.0° |
| OP1 | P | O5' | OP2 | 130.8° | 120.0° |
| OP1 | P | O5' | C5' | 179.1° | 55.0° |
| OP1 | P | OP2 | HOP2 | 0.0° | 180.0° |
| P | O5' | C5' | C4' | 174.6° | 180.0° |
| P | O5' | C5' | H5' | 54.3° | 60.0° |
| P | O5' | C5' | H5'' | 65.1° | 60.0° |
| O5' | P | OP2 | HOP2 | 121.7° | 60.0° |
| OP2 | P | O5' | C5' | 50.1° | 65.0° |
| C2 | N1 | C1' | C6 | 178.6° | 179.8° |
| N1 | C2 | O2 | N3 | 179.4° | 180.0° |
| N1 | C2 | N3 | C8 | 179.8° | 179.9° |
| N1 | C2 | N3 | C4 | 0.4° | 0.1° |
| C2 | N1 | C6 | C5 | 0.8° | 0.6° |
| C2 | N1 | C6 | H6 | 179.2° | 179.7° |
| C2 | N1 | C1' | C2' | 71.4° | 115.3° |
| C2 | N1 | C1' | O4' | 167.3° | 126.9° |
| C2 | N1 | C1' | H1' | 48.4° | 5.8° |
| C1' | N1 | C2 | O2 | 1.3° | 0.0° |
| C1' | N1 | C2 | N3 | 179.4° | 180.0° |
| C1' | N1 | C6 | C5 | 179.4° | 179.7° |
| C1' | N1 | C6 | H6 | 0.6° | 0.1° |
| N1 | C1' | C2' | O4' | 123.1° | 119.4° |
| N1 | C1' | C2' | H1' | 120.2° | 121.0° |
| N1 | C1' | O4' | H1' | 118.5° | 121.0° |
| N1 | C1' | C2' | C3' | 133.5° | 121.4° |
| N1 | C1' | C2' | H2' | 107.4° | 119.9° |
| N1 | C1' | C2' | H2'' | 14.4° | 2.8° |
| N1 | C1' | O4' | C4' | 118.0° | 145.9° |
| C6 | N1 | C2 | O2 | 179.9° | 179.8° |
| C6 | N1 | C2 | N3 | 0.8° | 0.3° |
| N1 | C6 | C5 | C4 | 0.5° | 0.6° |
| N1 | C6 | C5 | H6 | 180.0° | 179.7° |
| N1 | C6 | C5 | H5 | 179.5° | 179.8° |
| C6 | N1 | C1' | C2' | 110.0° | 65.0° |
| C6 | N1 | C1' | O4' | 11.3° | 52.9° |
| C6 | N1 | C1' | H1' | 130.2° | 174.0° |
| O2 | C2 | N3 | C8 | 0.5° | 0.1° |
| O2 | C2 | N3 | C4 | 179.7° | 180.0° |
| C2 | N3 | C8 | C4 | 179.8° | 179.9° |
| C2 | N3 | C4 | N4 | 179.8° | 180.0° |
| C2 | N3 | C4 | C5 | 0.1° | 0.1° |
| C2 | N3 | C8 | C7 | 179.9° | 180.0° |
| C2 | N3 | C8 | H8 | 0.1° | 0.1° |
| C8 | N3 | C4 | N4 | 0.0° | 0.1° |
| C8 | N3 | C4 | C5 | 179.9° | 180.0° |
| N3 | C8 | C7 | N4 | 0.2° | 0.1° |
| N3 | C8 | C7 | H8 | 180.0° | 179.9° |
| N3 | C8 | C7 | H7 | 179.8° | 180.0° |
| N3 | C4 | N4 | C5 | 179.9° | 179.9° |
| N3 | C4 | N4 | C7 | 0.1° | 0.0° |
| N3 | C4 | C5 | C6 | 0.1° | 0.4° |
| N3 | C4 | C5 | H5 | 179.9° | 180.0° |
| C4 | N3 | C8 | C7 | 0.1° | 0.1° |
| C4 | N3 | C8 | H8 | 179.9° | 180.0° |
| N4 | C4 | C5 | C6 | 179.7° | 179.7° |
| N4 | C4 | C5 | H5 | 0.3° | 0.1° |
| C4 | N4 | C7 | C8 | 0.2° | 0.0° |
| C4 | N4 | C7 | H7 | 179.8° | 179.9° |
| C5 | C4 | N4 | C7 | 180.0° | 179.9° |
| C4 | C5 | C6 | H5 | 180.0° | 179.6° |
| C4 | C5 | C6 | H6 | 179.5° | 179.6° |
| N4 | C7 | C8 | H7 | 180.0° | 179.9° |
| N4 | C7 | C8 | H8 | 179.8° | 180.0° |
| H5 | C5 | C6 | H6 | 0.5° | 0.0° |
| H7 | C7 | C8 | H8 | 0.2° | 0.1° |
| C2' | C1' | O4' | H1' | 116.0° | 119.5° |
| C1' | C2' | C3' | H2' | 119.1° | 118.6° |
| C1' | C2' | C3' | H2'' | 119.1° | 118.7° |
| C1' | C2' | H2' | H2'' | 122.6° | 122.7° |
| C1' | C2' | C3' | O3' | 93.3° | 139.0° |
| C1' | C2' | C3' | C4' | 23.2° | 20.9° |
| C1' | C2' | C3' | H3' | 143.4° | 97.3° |
| C2' | C1' | O4' | C4' | 7.5° | 26.5° |
| O4' | C1' | C2' | C3' | 10.4° | 2.0° |
| O4' | C1' | C2' | H2' | 129.5° | 120.7° |
| O4' | C1' | C2' | H2'' | 108.7° | 116.6° |
| C1' | O4' | C4' | C3' | 22.2° | 40.0° |
| C1' | O4' | C4' | C5' | 100.5° | 158.6° |
| C1' | O4' | C4' | H4' | 139.1° | 78.5° |
| H1' | C1' | C2' | C3' | 106.3° | 117.6° |
| H1' | C1' | C2' | H2' | 12.8° | 1.1° |
| H1' | C1' | C2' | H2'' | 134.6° | 123.8° |
| H1' | C1' | O4' | C4' | 123.5° | 93.0° |
| C3' | C2' | H2' | H2'' | 122.5° | 122.6° |
| C2' | C3' | O3' | C4' | 113.9° | 112.7° |
| C2' | C3' | O3' | H3' | 122.5° | 123.7° |
| C2' | C3' | C4' | H3' | 120.2° | 118.2° |
| C2' | C3' | O3' | HO3' | 180.0° | 61.5° |
| C2' | C3' | C4' | O4' | 28.0° | 37.0° |
| C2' | C3' | C4' | C5' | 93.1° | 155.5° |
| C2' | C3' | C4' | H4' | 145.8° | 81.6° |
| H2' | C2' | C3' | O3' | 25.8° | 20.4° |
| H2' | C2' | C3' | C4' | 142.3° | 97.7° |
| H2' | C2' | C3' | H3' | 97.5° | 144.0° |
| H2'' | C2' | C3' | O3' | 147.6° | 102.3° |
| H2'' | C2' | C3' | C4' | 95.9° | 139.5° |
| H2'' | C2' | C3' | H3' | 24.3° | 21.3° |
| O3' | C3' | C4' | H3' | 124.5° | 123.6° |
| O3' | C3' | C4' | O4' | 87.3° | 155.2° |
| O3' | C3' | C4' | C5' | 151.6° | 86.3° |
| O3' | C3' | C4' | H4' | 30.5° | 36.6° |
| C4' | C3' | O3' | HO3' | 66.1° | 174.2° |
| C3' | C4' | O4' | C5' | 122.7° | 118.5° |
| C3' | C4' | O4' | H4' | 116.9° | 118.5° |
| C3' | C4' | C5' | H4' | 121.2° | 122.9° |
| C3' | C4' | C5' | O5' | 43.6° | 175.0° |
| C3' | C4' | C5' | H5' | 163.9° | 55.0° |
| C3' | C4' | C5' | H5'' | 76.7° | 65.0° |
| H3' | C3' | O3' | HO3' | 57.5° | 62.2° |
| H3' | C3' | C4' | O4' | 148.2° | 81.2° |
| H3' | C3' | C4' | C5' | 27.1° | 37.3° |
| H3' | C3' | C4' | H4' | 94.0° | 160.2° |
| O4' | C4' | C5' | H4' | 121.3° | 123.0° |
| O4' | C4' | C5' | O5' | 73.9° | 70.9° |
| O4' | C4' | C5' | H5' | 46.4° | 169.1° |
| O4' | C4' | C5' | H5'' | 165.8° | 49.1° |
| C4' | C5' | O5' | H5' | 120.3° | 120.0° |
| C4' | C5' | O5' | H5'' | 120.3° | 120.0° |
| C4' | C5' | H5' | H5'' | 119.0° | 120.0° |
| H4' | C4' | C5' | O5' | 164.8° | 52.1° |
| H4' | C4' | C5' | H5' | 74.9° | 67.9° |
| H4' | C4' | C5' | H5'' | 44.5° | 172.1° |
| O5' | C5' | H5' | H5'' | 119.0° | 120.1° |
