Loading
PDBj
English日本語简体中文繁體中文한국어
✖
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help
SummaryGeometryRelated PDB entries

DU5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
OAACAVdoub1.22Å1.23Å
CAFCAEdoub1.39Å1.39ÅAromatic
CAFCAKsing1.36Å1.39ÅAromatic
CANNAUsing1.46Å1.48Å
CANCAMsing1.53Å1.54Å
CAVNAUsing1.35Å1.36Å
CAVCAWsing1.48Å1.40Å
CAHCAWdoub1.40Å1.38ÅAromatic
CAHCACsing1.38Å1.39ÅAromatic
CAECAJsing1.36Å1.39ÅAromatic
CAPCARsing1.53Å1.52Å
CAPNBAsing1.47Å1.44Å
CAKCAZdoub1.40Å1.39ÅAromatic
CAWCAIsing1.40Å1.39ÅAromatic
CAMCAOsing1.53Å1.52Å
CACCABdoub1.38Å1.39ÅAromatic
CARNBBsing1.47Å1.47Å
CAONBAsing1.47Å1.46Å
NBACAQsing1.47Å1.45Å
CAICADdoub1.38Å1.39ÅAromatic
CAJCAYdoub1.40Å1.39ÅAromatic
CABCADsing1.38Å1.38ÅAromatic
CAZCAYsing1.42Å1.40ÅAromatic
CAZCAXsing1.41Å1.40ÅAromatic
NBBCAXsing1.38Å1.35Å
NBBCASsing1.47Å1.50Å
CAYCALsing1.41Å1.38ÅAromatic
CAQCASsing1.53Å1.53Å
CAXNATdoub1.32Å1.34ÅAromatic
CALCAGdoub1.36Å1.39ÅAromatic
NATCAGsing1.33Å1.40ÅAromatic
CAJH1sing1.08Å1.08Å
CAEH2sing1.08Å1.08Å
CAFH3sing1.08Å1.08Å
CAKH4sing1.08Å1.08Å
CALH5sing1.08Å1.08Å
CAGH6sing1.08Å1.08Å
CASH7sing1.09Å1.10Å
CASH8sing1.09Å1.10Å
CAQH9sing1.09Å1.10Å
CAQH10sing1.09Å1.10Å
CARH11sing1.09Å1.10Å
CARH12sing1.09Å1.10Å
CAPH13sing1.09Å1.10Å
CAPH14sing1.09Å1.10Å
CAOH16sing1.09Å1.10Å
CAOH17sing1.09Å1.10Å
CAMH18sing1.09Å1.10Å
CAMH19sing1.09Å1.10Å
CANH20sing1.09Å1.10Å
CANH21sing1.09Å1.10Å
NAUH22sing0.97Å1.00Å
CAHH23sing1.08Å1.08Å
CACH24sing1.08Å1.08Å
CABH25sing1.08Å1.08Å
CADH26sing1.08Å1.08Å
CAIH27sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
OAACAVNAU123.6°120.0°
OAACAVCAW119.3°120.0°
CAECAFCAK120.9°121.0°
CAFCAECAJ119.5°121.0°
CAFCAEH2120.3°119.5°
CAECAFH3119.5°119.5°
CAFCAKCAZ119.8°119.6°
CAKCAFH3119.5°119.5°
CAFCAKH4120.1°120.2°
NAUCANCAM112.7°109.5°
CANNAUCAV121.6°120.0°
NAUCANH20108.7°109.4°
NAUCANH21108.7°109.5°
CANNAUH22119.2°120.0°
CANCAMCAO100.8°109.5°
CANCAMH18111.6°109.5°
CANCAMH19111.6°109.5°
CAMCANH20108.6°109.5°
CAMCANH21108.6°109.4°
NAUCAVCAW117.0°120.0°
CAVNAUH22119.2°120.0°
CAVCAWCAH118.7°120.2°
CAVCAWCAI122.1°120.1°
CAWCAHCAC120.5°119.9°
CAHCAWCAI119.2°119.7°
CAWCAHH23119.7°120.1°
CAHCACCAB119.8°120.1°
CACCAHH23119.7°120.1°
CAHCACH24120.1°119.9°
CAECAJCAY119.6°119.5°
CAECAJH1120.2°120.3°
CAJCAEH2120.3°119.5°
CARCAPNBA108.7°109.3°
CAPCARNBB108.9°109.4°
CAPCARH11109.6°109.4°
CAPCARH12109.6°109.6°
CARCAPH13109.7°109.5°
CARCAPH14109.7°109.5°
CAPNBACAO98.4°111.0°
CAPNBACAQ116.4°110.9°
NBACAPH13109.7°109.5°
NBACAPH14109.7°109.5°
CAKCAZCAY118.9°119.4°
CAKCAZCAX120.5°122.1°
CAZCAKH4120.1°120.2°
CAWCAICAD120.4°119.9°
CAWCAIH27119.8°120.1°
CAMCAONBA109.2°109.5°
CAMCAOH16109.5°109.5°
CAMCAOH17109.6°109.5°
CAOCAMH18111.6°109.5°
CAOCAMH19111.6°109.4°
CACCABCAD120.1°120.3°
CABCACH24120.1°119.9°
CACCABH25119.9°119.8°
CARNBBCAX119.3°111.0°
CARNBBCAS123.8°110.8°
NBBCARH11109.6°109.5°
NBBCARH12109.6°109.5°
CAONBACAQ96.1°111.0°
NBACAOH16109.6°109.5°
NBACAOH17109.5°109.5°
NBACAQCAS105.8°109.4°
NBACAQH9110.4°109.5°
NBACAQH10110.4°109.5°
CAICADCAB119.8°120.2°
CAICADH26120.1°119.9°
CADCAIH27119.8°120.1°
CAJCAYCAZ121.2°119.6°
CAJCAYCAL119.2°122.2°
CAYCAJH1120.2°120.3°
CADCABH25119.9°119.9°
CABCADH26120.1°119.9°
CAYCAZCAX120.6°118.5°
CAZCAYCAL119.7°118.3°
CAZCAXNBB122.4°120.1°
CAZCAXNAT119.5°119.8°
CAXNBBCAS116.8°111.0°
NBBCAXNAT118.1°120.1°
NBBCASCAQ115.5°109.4°
NBBCASH7107.9°109.5°
NBBCASH8108.0°109.4°
CAYCALCAG118.8°118.8°
CAYCALH5120.6°120.5°
CAQCASH7107.9°109.5°
CAQCASH8107.9°109.5°
CASCAQH9110.4°109.5°
CASCAQH10110.4°109.5°
CAXNATCAG120.8°122.6°
CALCAGNAT120.6°122.0°
CAGCALH5120.6°120.6°
CALCAGH6119.7°119.0°
NATCAGH6119.7°119.0°
H7CASH8109.5°109.5°
H9CAQH10109.4°109.5°
H11CARH12109.4°109.5°
H13CAPH14109.4°109.5°
H16CAOH17109.5°109.4°
H18CAMH19109.5°109.5°
H20CANH21109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
OAACAVNAUCAN2.5°0.0°
OAACAVNAUCAW175.6°179.9°
OAACAVCAWCAH13.3°179.8°
OAACAVCAWCAI164.8°0.0°
OAACAVNAUH22177.5°180.0°
CAECAFCAKH3180.0°180.0°
CAFCAECAJH2180.0°179.9°
CAECAFCAKCAZ0.4°0.0°
CAFCAECAJCAY0.5°0.1°
CAFCAECAJH1179.4°179.8°
CAECAFCAKH4179.6°180.0°
CAKCAFCAECAJ0.6°0.1°
CAFCAKCAZH4180.0°180.0°
CAFCAKCAZCAY0.1°0.0°
CAFCAKCAZCAX179.8°180.0°
CAKCAFCAEH2179.4°180.0°
NAUCANCAMH20120.5°120.0°
NAUCANCAMH21120.5°120.0°
CANNAUCAVH22180.0°180.0°
CANNAUCAVCAW178.1°180.0°
NAUCANCAMCAO125.2°180.0°
NAUCANCAMH186.6°60.0°
NAUCANCAMH19116.2°60.0°
NAUCANH20H21118.5°120.0°
CAMCANNAUCAV171.5°180.0°
CANCAMCAOH18118.6°120.0°
CANCAMCAOH19118.6°119.9°
CANCAMCAONBA161.7°180.0°
CANCAMCAOH1641.8°60.0°
CANCAMCAOH1778.3°60.0°
CANCAMH18H19124.0°120.0°
CAMCANH20H21118.5°120.0°
CAMCANNAUH228.5°0.0°
NAUCAVCAWCAH170.9°0.3°
NAUCAVCAWCAI11.0°180.0°
CAVNAUCANH2051.0°60.0°
CAVNAUCANH2168.0°60.0°
CAVCAWCAHCAI178.1°179.7°
CAVCAWCAHCAC178.8°180.0°
CAVCAWCAICAD178.4°179.8°
CAWCAVNAUH221.9°0.0°
CAVCAWCAHH231.1°0.1°
CAVCAWCAIH271.6°0.0°
CAWCAHCACH23180.0°180.0°
CAWCAHCACCAB0.6°0.0°
CAHCAWCAICAD0.3°0.5°
CAWCAHCACH24179.4°180.0°
CAHCAWCAIH27179.7°179.7°
CACCAHCAWCAI0.7°0.2°
CAHCACCABH24180.0°179.9°
CAHCACCABCAD0.0°0.0°
CAHCACCABH25180.0°180.0°
CAECAJCAYH1180.0°179.7°
CAECAJCAYCAZ0.2°0.0°
CAECAJCAYCAL179.6°179.7°
CAJCAECAFH3179.4°179.9°
CARCAPNBAH13119.9°120.0°
CARCAPNBAH14119.9°119.9°
CAPCARNBBH11119.9°119.9°
CAPCARNBBH12119.9°120.1°
CARCAPNBACAO172.0°176.8°
CARCAPNBACAQ70.8°59.3°
CAPCARNBBCAX153.8°176.8°
CAPCARNBBCAS29.5°59.4°
CAPCARH11H12120.2°120.1°
CARCAPH13H14120.3°120.1°
CAPNBACAOCAM135.9°170.0°
NBACAPCARNBB47.4°58.4°
CAPNBACAOCAQ117.9°123.8°
CAPNBACAQCAS61.7°59.3°
CAPNBACAQH957.8°179.3°
CAPNBACAQH10178.9°60.6°
NBACAPCARH1172.6°178.4°
NBACAPCARH12167.3°61.6°
NBACAPH13H14120.4°120.1°
CAPNBACAOH1616.0°70.0°
CAPNBACAOH17104.1°50.0°
CAKCAZCAYCAJ0.0°0.0°
CAKCAZCAYCAX179.9°180.0°
CAKCAZCAXNBB0.2°0.0°
CAKCAZCAYCAL179.8°179.8°
CAKCAZCAXNAT179.5°179.9°
CAZCAKCAFH3179.6°180.0°
CAWCAICADH27180.0°179.8°
CAWCAICADCAB0.2°0.5°
CAICAWCAHH23179.3°179.8°
CAWCAICADH26179.8°179.7°
CAMCAONBAH16119.9°120.0°
CAMCAONBAH17120.0°120.0°
CAMCAONBACAQ106.2°66.2°
CAMCAOH16H17120.1°120.0°
CAOCAMH18H19124.0°120.0°
CAOCAMCANH20114.3°60.0°
CAOCAMCANH214.7°60.0°
CACCABCADCAI0.4°0.2°
CACCABCADH25180.0°180.0°
CABCACCAHH23179.4°179.9°
CACCABCADH26179.7°179.9°
CARNBBCAXCAZ14.6°118.2°
CARNBBCAXCAS176.9°123.7°
CARNBBCASCAQ24.6°59.4°
CARNBBCAXNAT166.1°62.0°
CARNBBCASH796.2°60.6°
CARNBBCASH8145.5°179.3°
NBBCARH11H12120.3°120.1°
NBBCARCAPH1372.5°61.5°
NBBCARCAPH14167.3°178.4°
CAONBACAQCAS164.2°176.8°
CAONBACAQH944.8°56.9°
CAONBACAQH1076.3°63.2°
CAONBACAPH1352.1°63.2°
CAONBACAPH1468.1°56.9°
NBACAOH16H17120.1°120.0°
NBACAOCAMH1879.7°60.0°
NBACAOCAMH1943.2°60.0°
NBACAQCASNBB35.2°58.4°
NBACAQCASH9119.5°119.9°
NBACAQCASH10119.4°120.0°
NBACAQCASH785.7°61.6°
NBACAQCASH8156.1°178.4°
NBACAQH9H10121.6°120.1°
CAQNBACAPH1349.1°60.6°
CAQNBACAPH14169.3°179.2°
CAQNBACAOH16133.9°53.8°
CAQNBACAOH1713.8°173.8°
CAICADCABH26180.0°179.8°
CAICADCABH25179.6°179.8°
CAJCAYCAZCAL179.8°179.8°
CAJCAYCAZCAX179.9°180.0°
CAJCAYCALCAG180.0°180.0°
CAYCAJCAEH2179.4°180.0°
CAJCAYCALH50.0°0.1°
CADCABCACH24180.0°180.0°
CABCADCAIH27179.8°179.7°
CAYCAZCAXNBB179.9°179.9°
CAYCAZCAXNAT0.6°0.1°
CAZCAYCALCAG0.2°0.3°
CAZCAYCAJH1179.7°179.7°
CAYCAZCAKH4179.9°180.0°
CAZCAYCALH5179.8°179.7°
CAZCAXNBBNAT179.3°179.8°
CAZCAXNBBCAS162.3°118.1°
CAXCAZCAYCAL0.3°0.2°
CAZCAXNATCAG0.8°0.4°
CAXCAZCAKH40.2°0.0°
CAXNBBCASCAQ158.6°176.8°
NBBCAXNATCAG179.9°179.8°
CAXNBBCASH780.6°63.2°
CAXNBBCASH837.7°56.9°
CAXNBBCARH1186.3°56.9°
CAXNBBCARH1233.8°63.2°
NBBCASCAQH7120.9°120.0°
NBBCASCAQH8120.9°119.9°
CASNBBCAXNAT17.0°61.8°
NBBCASH7H8117.3°120.0°
NBBCASCAQH984.3°178.4°
NBBCASCAQH10154.6°61.6°
CASNBBCARH1190.4°179.3°
CASNBBCARH12149.4°60.7°
CAYCALCAGH5180.0°179.9°
CAYCALCAGNAT0.4°0.1°
CALCAYCAJH10.5°0.0°
CAYCALCAGH6179.7°180.0°
CAQCASH7H8117.2°120.1°
CASCAQH9H10121.7°120.0°
CAXNATCAGCAL0.7°0.4°
CAXNATCAGH6179.3°179.6°
CALCAGNATH6180.0°180.0°
NATCAGCALH5179.6°180.0°
H1CAJCAEH20.6°0.3°
H2CAECAFH30.6°0.0°
H3CAFCAKH40.4°0.0°
H5CALCAGH60.3°0.0°
H7CASCAQH9154.9°58.4°
H7CASCAQH1033.7°178.4°
H8CASCAQH936.6°61.7°
H8CASCAQH1084.5°58.4°
H11CARCAPH13167.5°58.4°
H11CARCAPH1447.3°61.7°
H12CARCAPH1347.4°178.4°
H12CARCAPH1472.8°58.3°
H16CAOCAMH18160.3°180.0°
H16CAOCAMH1976.8°60.0°
H17CAOCAMH1840.3°60.0°
H17CAOCAMH19163.1°179.9°
H18CAMCANH20127.2°180.0°
H18CAMCANH21113.8°60.0°
H19CAMCANH204.3°59.9°
H19CAMCANH21123.3°180.0°
H20CANNAUH22129.0°120.0°
H21CANNAUH22112.0°120.0°
H23CAHCACH240.6°0.0°
H24CACCABH250.0°0.0°
H25CABCADH260.4°0.0°
H26CADCAIH270.2°0.1°

218500

PDB entries from 2024-04-17

PDB statisticsPDBj update infoContact PDBjnumon