Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

DE5

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C2N1sing1.32Å1.36ÅAromatic
C2C1doub1.34Å1.35ÅAromatic
N1C3doub1.30Å1.34ÅAromatic
C1S1sing1.76Å1.68ÅAromatic
C3N2sing1.39Å1.35Å
C3S1sing1.71Å1.70ÅAromatic
N2C4sing1.35Å1.38Å
C4C5sing1.51Å1.57Å
C4O1doub1.21Å1.25Å
C5N3sing1.47Å1.50Å
C5H1sing1.09Å1.10Å
C5H2sing1.09Å1.10Å
N2H3sing0.97Å1.00Å
N3H4sing1.01Å1.00Å
N3H5sing1.01Å1.00Å
C2H7sing1.08Å1.08Å
C1H8sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
N1C2C1114.0°114.6°
C2N1C3114.9°116.9°
N1C2H7123.0°122.7°
C2C1S1108.9°108.0°
C1C2H7123.0°122.7°
C2C1H8125.6°126.0°
N1C3N2123.9°125.0°
N1C3S1108.0°110.1°
C1S1C394.2°90.4°
S1C1H8125.5°126.0°
N2C3S1128.1°124.9°
C3N2C4120.5°120.0°
C3N2H3119.7°120.0°
N2C4C5113.1°120.0°
N2C4O1125.1°120.0°
C4N2H3119.7°120.0°
C5C4O1121.7°120.0°
C4C5N3113.3°109.5°
C4C5H1108.5°109.5°
C4C5H2108.5°109.4°
N3C5H1108.5°109.5°
N3C5H2108.5°109.5°
C5N3H4109.5°111.0°
C5N3H5109.5°111.0°
H1C5H2109.5°109.5°
H4N3H5109.5°111.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
N1C2C1H7180.0°180.0°
N1C2C1S11.1°0.0°
C2N1C3N2179.7°179.9°
C2N1C3S10.2°0.0°
N1C2C1H8178.8°180.0°
C1C2N1C30.6°0.0°
C2C1S1H8180.0°180.0°
C2C1S1C31.1°0.0°
N1C3S1C10.7°0.0°
N1C3N2S1179.4°179.9°
N1C3N2C4168.8°180.0°
N1C3N2H311.2°0.0°
C3N1C2H7179.4°180.0°
C1S1C3N2179.8°180.0°
S1C1C2H7178.9°180.0°
C3N2C4H3180.0°180.0°
C3N2C4C5177.5°179.9°
C3N2C4O11.1°0.3°
S1C3N2C411.8°0.1°
S1C3N2H3168.2°179.9°
C3S1C1H8178.9°180.0°
N2C4C5O1176.5°179.7°
N2C4C5N3165.0°179.7°
N2C4C5H144.5°59.7°
N2C4C5H274.4°60.3°
C4C5N3H1120.6°120.0°
C4C5N3H2120.6°120.0°
C4C5H1H2118.3°120.0°
C5C4N2H32.4°0.0°
C4C5N3H4180.0°56.1°
C4C5N3H560.0°180.0°
O1C4C5N311.5°0.1°
O1C4C5H1132.0°120.0°
O1C4C5H2109.1°120.1°
O1C4N2H3178.8°179.7°
N3C5H1H2118.2°120.0°
C5N3H4H5120.0°124.0°
H1C5N3H459.4°64.0°
H1C5N3H5179.4°60.0°
H2C5N3H459.4°176.0°
H2C5N3H560.6°60.0°
H7C2C1H81.1°0.0°

221051

PDB entries from 2024-06-12

PDB statisticsPDBj update infoContact PDBjnumon