Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| OP3 | P | sing | 1.61Å | 1.60Å | |
| OP3 | HOP3 | sing | 0.97Å | 0.95Å | |
| P | OP1 | doub | 1.48Å | 1.48Å | |
| P | OP2 | sing | 1.61Å | 1.47Å | |
| P | O5' | sing | 1.61Å | 1.59Å | |
| OP2 | HOP2 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| C5' | H5' | sing | 1.09Å | 1.11Å | |
| C5' | H5'' | sing | 1.09Å | 1.11Å | |
| C4' | O4' | sing | 1.43Å | 1.45Å | |
| C4' | C3' | sing | 1.54Å | 1.52Å | |
| C4' | H4' | sing | 1.09Å | 1.11Å | |
| O4' | C1' | sing | 1.44Å | 1.43Å | |
| C3' | O3' | sing | 1.43Å | 1.42Å | |
| C3' | C2' | sing | 1.55Å | 1.52Å | |
| C3' | H3' | sing | 1.09Å | 1.11Å | |
| O3' | HO'3 | sing | 0.97Å | 0.95Å | |
| C2' | C1' | sing | 1.55Å | 1.51Å | |
| C2' | H2' | sing | 1.09Å | 1.12Å | |
| C2' | H2'' | sing | 1.09Å | 1.11Å | |
| C1' | O1' | sing | 1.43Å | 1.43Å | |
| C1' | H1' | sing | 1.09Å | 1.12Å | |
| O1' | HO1' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| P | OP3 | HOP3 | 109.7° | 106.8° |
| OP3 | P | OP1 | 109.7° | 109.4° |
| OP3 | P | OP2 | 107.6° | 109.4° |
| OP3 | P | O5' | 104.0° | 109.5° |
| OP1 | P | OP2 | 119.8° | 109.5° |
| OP1 | P | O5' | 106.0° | 109.4° |
| OP2 | P | O5' | 108.7° | 109.5° |
| P | OP2 | HOP2 | 107.6° | 106.8° |
| P | O5' | C5' | 120.1° | 106.8° |
| O5' | C5' | C4' | 110.2° | 109.5° |
| O5' | C5' | H5' | 111.9° | 109.4° |
| O5' | C5' | H5'' | 111.9° | 109.5° |
| C4' | C5' | H5' | 111.9° | 109.5° |
| C4' | C5' | H5'' | 111.9° | 109.5° |
| C5' | C4' | O4' | 110.2° | 109.8° |
| C5' | C4' | C3' | 113.1° | 109.8° |
| C5' | C4' | H4' | 105.7° | 109.8° |
| H5' | C5' | H5'' | 98.5° | 109.5° |
| O4' | C4' | C3' | 106.7° | 107.6° |
| O4' | C4' | H4' | 112.1° | 109.9° |
| C4' | O4' | C1' | 109.8° | 109.9° |
| C3' | C4' | H4' | 109.2° | 109.8° |
| C4' | C3' | O3' | 109.5° | 111.1° |
| C4' | C3' | C2' | 104.7° | 102.3° |
| C4' | C3' | H3' | 113.9° | 110.9° |
| O4' | C1' | C2' | 106.2° | 105.2° |
| O4' | C1' | O1' | 107.1° | 110.3° |
| O4' | C1' | H1' | 113.7° | 110.3° |
| O3' | C3' | C2' | 113.1° | 110.9° |
| O3' | C3' | H3' | 105.6° | 110.7° |
| C3' | O3' | HO'3 | 109.4° | 106.9° |
| C2' | C3' | H3' | 110.2° | 110.8° |
| C3' | C2' | C1' | 103.3° | 100.9° |
| C3' | C2' | H2' | 114.6° | 111.1° |
| C3' | C2' | H2'' | 114.6° | 111.2° |
| C1' | C2' | H2' | 114.5° | 111.1° |
| C1' | C2' | H2'' | 114.5° | 111.2° |
| C2' | C1' | O1' | 111.4° | 110.3° |
| C2' | C1' | H1' | 109.6° | 110.3° |
| H2' | C2' | H2'' | 95.9° | 111.0° |
| O1' | C1' | H1' | 108.7° | 110.2° |
| C1' | O1' | HO1' | 107.1° | 106.8° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| OP3 | P | OP1 | OP2 | 125.1° | 120.0° |
| OP3 | P | OP1 | O5' | 111.7° | 120.0° |
| OP3 | P | OP2 | O5' | 112.0° | 120.0° |
| OP3 | P | OP2 | HOP2 | 180.0° | 60.0° |
| OP3 | P | O5' | C5' | 61.1° | 180.0° |
| HOP3 | OP3 | P | OP1 | 180.0° | 60.0° |
| HOP3 | OP3 | P | OP2 | 48.2° | 60.0° |
| HOP3 | OP3 | P | O5' | 67.0° | 180.0° |
| OP1 | P | OP2 | O5' | 121.9° | 120.0° |
| OP1 | P | OP2 | HOP2 | 54.0° | 180.0° |
| OP1 | P | O5' | C5' | 176.7° | 60.0° |
| OP2 | P | O5' | C5' | 53.4° | 60.0° |
| O5' | P | OP2 | HOP2 | 68.0° | 60.0° |
| P | O5' | C5' | C4' | 163.6° | 180.0° |
| P | O5' | C5' | H5' | 71.2° | 59.9° |
| P | O5' | C5' | H5'' | 38.3° | 60.0° |
| O5' | C5' | C4' | H5' | 125.2° | 120.0° |
| O5' | C5' | C4' | H5'' | 125.3° | 120.0° |
| O5' | C5' | H5' | H5'' | 117.9° | 120.0° |
| O5' | C5' | C4' | O4' | 60.4° | 61.9° |
| O5' | C5' | C4' | C3' | 179.7° | 180.0° |
| O5' | C5' | C4' | H4' | 60.9° | 59.1° |
| C4' | C5' | H5' | H5'' | 117.9° | 120.0° |
| C5' | C4' | O4' | C3' | 123.1° | 119.5° |
| C5' | C4' | O4' | H4' | 117.4° | 120.9° |
| C5' | C4' | C3' | H4' | 117.3° | 120.9° |
| C5' | C4' | O4' | C1' | 128.8° | 118.0° |
| C5' | C4' | C3' | O3' | 130.9° | 100.7° |
| C5' | C4' | C3' | C2' | 107.5° | 140.9° |
| C5' | C4' | C3' | H3' | 13.0° | 22.8° |
| H5' | C5' | C4' | O4' | 64.8° | 178.2° |
| H5' | C5' | C4' | C3' | 54.5° | 60.0° |
| H5' | C5' | C4' | H4' | 173.9° | 60.9° |
| H5'' | C5' | C4' | O4' | 174.4° | 58.2° |
| H5'' | C5' | C4' | C3' | 55.0° | 60.0° |
| H5'' | C5' | C4' | H4' | 64.4° | 179.1° |
| O4' | C4' | C3' | H4' | 121.4° | 119.6° |
| O4' | C4' | C3' | O3' | 107.8° | 139.7° |
| O4' | C4' | C3' | C2' | 13.8° | 21.4° |
| O4' | C4' | C3' | H3' | 134.3° | 96.7° |
| C4' | O4' | C1' | C2' | 23.1° | 24.3° |
| C4' | O4' | C1' | O1' | 96.1° | 143.3° |
| C4' | O4' | C1' | H1' | 143.8° | 94.7° |
| C3' | C4' | O4' | C1' | 5.7° | 1.6° |
| C4' | C3' | O3' | C2' | 116.3° | 113.0° |
| C4' | C3' | O3' | H3' | 123.0° | 123.6° |
| C4' | C3' | C2' | H3' | 122.9° | 118.2° |
| C4' | C3' | O3' | HO'3 | 179.9° | 174.3° |
| C4' | C3' | C2' | C1' | 26.7° | 34.1° |
| C4' | C3' | C2' | H2' | 98.5° | 83.8° |
| C4' | C3' | C2' | H2'' | 151.9° | 152.0° |
| H4' | C4' | O4' | C1' | 113.8° | 121.1° |
| H4' | C4' | C3' | O3' | 13.6° | 20.1° |
| H4' | C4' | C3' | C2' | 135.1° | 98.2° |
| H4' | C4' | C3' | H3' | 104.4° | 143.7° |
| O4' | C1' | C2' | C3' | 30.8° | 36.3° |
| O4' | C1' | C2' | O1' | 116.3° | 119.0° |
| O4' | C1' | C2' | H1' | 123.3° | 119.0° |
| O4' | C1' | C2' | H2' | 94.4° | 81.6° |
| O4' | C1' | C2' | H2'' | 156.1° | 154.3° |
| O4' | C1' | O1' | H1' | 123.3° | 122.0° |
| O4' | C1' | O1' | HO1' | 180.0° | 62.7° |
| O3' | C3' | C2' | H3' | 118.0° | 123.3° |
| O3' | C3' | C2' | C1' | 92.4° | 152.6° |
| O3' | C3' | C2' | H2' | 142.4° | 34.7° |
| O3' | C3' | C2' | H2'' | 32.8° | 89.5° |
| C2' | C3' | O3' | HO'3 | 63.6° | 61.3° |
| C3' | C2' | C1' | H2' | 125.2° | 117.9° |
| C3' | C2' | C1' | H2'' | 125.3° | 118.0° |
| C3' | C2' | H2' | H2'' | 120.5° | 124.2° |
| C3' | C2' | C1' | O1' | 85.5° | 155.3° |
| C3' | C2' | C1' | H1' | 154.1° | 82.6° |
| H3' | C3' | O3' | HO'3 | 57.0° | 62.0° |
| H3' | C3' | C2' | C1' | 149.6° | 84.1° |
| H3' | C3' | C2' | H2' | 24.4° | 158.0° |
| H3' | C3' | C2' | H2'' | 85.2° | 33.9° |
| C1' | C2' | H2' | H2'' | 120.4° | 124.2° |
| C2' | C1' | O1' | H1' | 120.9° | 122.1° |
| C2' | C1' | O1' | HO1' | 64.3° | 178.6° |
| H2' | C2' | C1' | O1' | 149.3° | 37.4° |
| H2' | C2' | C1' | H1' | 28.9° | 159.5° |
| H2'' | C2' | C1' | O1' | 39.8° | 86.7° |
| H2'' | C2' | C1' | H1' | 80.6° | 35.4° |
| H1' | C1' | O1' | HO1' | 56.7° | 59.3° |
