CPN

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C8'	C7'	sing	1.51Å	1.56Å
C8'	N1	sing	1.47Å	1.49Å
C8'	H8'1	sing	1.09Å	1.10Å
C8'	H8'2	sing	1.09Å	1.10Å
C7'	O7'	doub	1.21Å	1.24Å
C7'	N4'	sing	1.35Å	1.35Å
C5'	C	sing	1.51Å	1.55Å
C5'	N4'	sing	1.46Å	1.48Å
C5'	H5'1	sing	1.09Å	1.10Å
C5'	H5'2	sing	1.09Å	1.10Å
C	O	doub	1.21Å	1.24Å
C	OXT	sing	1.34Å	1.26Å
OXT	HXT	sing	0.97Å	0.95Å
N4'	C3'	sing	1.46Å	1.46Å
C3'	C2'	sing	1.53Å	1.54Å
C3'	H3'1	sing	1.09Å	1.10Å
C3'	H3'2	sing	1.09Å	1.10Å
C2'	N	sing	1.47Å	1.46Å
C2'	H2'1	sing	1.09Å	1.10Å
C2'	H2'2	sing	1.09Å	1.10Å
N	H	sing	1.01Å	1.00Å
N	H2	sing	1.01Å	1.00Å
N	H3	sing	1.01Å	1.00Å
N1	C2	sing	1.35Å	1.39Å
N1	C6	sing	1.36Å	1.37Å
C2	N3	sing	1.33Å	1.35Å
C2	O2	doub	1.22Å	1.23Å
N3	C4	doub	1.33Å	1.30Å
C4	C5	sing	1.41Å	1.40Å
C4	N4	sing	1.38Å	1.29Å
C5	C6	doub	1.35Å	1.35Å
C5	H5	sing	1.08Å	1.08Å
C6	H6	sing	1.08Å	1.08Å
N4	HN41	sing	0.97Å	1.00Å
N4	HN42	sing	0.97Å	1.00Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C7'	C8'	N1	107.1°	109.5°
C7'	C8'	H8'1	110.3°	109.4°
C7'	C8'	H8'2	110.3°	109.5°
C8'	C7'	O7'	119.9°	120.0°
C8'	C7'	N4'	120.3°	120.0°
N1	C8'	H8'1	110.3°	109.5°
N1	C8'	H8'2	110.2°	109.5°
C8'	N1	C2	119.8°	119.8°
C8'	N1	C6	120.7°	119.8°
H8'1	C8'	H8'2	108.7°	109.4°
O7'	C7'	N4'	119.8°	120.0°
C7'	N4'	C5'	118.5°	120.0°
C7'	N4'	C3'	124.3°	120.0°
C	C5'	N4'	105.8°	109.5°
C	C5'	H5'1	110.7°	109.5°
C	C5'	H5'2	110.7°	109.4°
C5'	C	O	119.8°	120.0°
C5'	C	OXT	114.0°	120.0°
N4'	C5'	H5'1	110.7°	109.5°
N4'	C5'	H5'2	110.7°	109.5°
C5'	N4'	C3'	117.1°	120.0°
H5'1	C5'	H5'2	108.2°	109.4°
O	C	OXT	117.0°	120.0°
C	OXT	HXT	109.5°	117.0°
N4'	C3'	C2'	110.0°	109.5°
N4'	C3'	H3'1	109.3°	109.5°
N4'	C3'	H3'2	109.3°	109.4°
C2'	C3'	H3'1	109.3°	109.5°
C2'	C3'	H3'2	109.3°	109.5°
C3'	C2'	N	111.5°	109.5°
C3'	C2'	H2'1	108.8°	109.4°
C3'	C2'	H2'2	108.8°	109.5°
H3'1	C3'	H3'2	109.7°	109.5°
N	C2'	H2'1	108.8°	109.5°
N	C2'	H2'2	108.8°	109.5°
C2'	N	H	109.5°	109.5°
C2'	N	H2	109.5°	109.4°
C2'	N	H3	109.5°	109.5°
H2'1	C2'	H2'2	110.1°	109.5°
H	N	H2	109.5°	109.5°
H	N	H3	109.5°	109.4°
H2	N	H3	109.5°	109.4°
C2	N1	C6	119.5°	120.4°
N1	C2	N3	119.7°	121.1°
N1	C2	O2	120.5°	119.5°
N1	C6	C5	120.7°	119.3°
N1	C6	H6	119.6°	120.3°
N3	C2	O2	119.7°	119.5°
C2	N3	C4	118.9°	120.7°
N3	C4	C5	124.3°	119.6°
N3	C4	N4	114.4°	120.2°
C5	C4	N4	121.1°	120.2°
C4	C5	C6	116.4°	119.0°
C4	C5	H5	121.8°	120.5°
C4	N4	HN41	120.0°	120.0°
C4	N4	HN42	120.0°	120.0°
C6	C5	H5	121.8°	120.5°
C5	C6	H6	119.7°	120.4°
HN41	N4	HN42	120.0°	120.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C7'	C8'	N1	H8'1	120.0°	120.0°
C7'	C8'	N1	H8'2	120.0°	120.0°
C7'	C8'	H8'1	H8'2	121.0°	120.0°
C8'	C7'	O7'	N4'	179.9°	180.0°
C8'	C7'	N4'	C5'	176.4°	0.0°
C8'	C7'	N4'	C3'	0.2°	180.0°
C7'	C8'	N1	C2	102.9°	90.0°
C7'	C8'	N1	C6	75.3°	90.3°
N1	C8'	H8'1	H8'2	120.9°	120.0°
N1	C8'	C7'	O7'	13.1°	0.0°
N1	C8'	C7'	N4'	166.9°	180.0°
C8'	N1	C2	C6	178.2°	179.7°
C8'	N1	C2	N3	178.6°	179.9°
C8'	N1	C2	O2	0.5°	0.0°
C8'	N1	C6	C5	178.0°	179.7°
C8'	N1	C6	H6	2.0°	0.0°
H8'1	C8'	C7'	O7'	133.1°	120.0°
H8'1	C8'	C7'	N4'	46.9°	60.0°
H8'1	C8'	N1	C2	17.2°	30.0°
H8'1	C8'	N1	C6	164.7°	149.7°
H8'2	C8'	C7'	O7'	106.9°	120.0°
H8'2	C8'	C7'	N4'	73.1°	60.0°
H8'2	C8'	N1	C2	137.1°	150.0°
H8'2	C8'	N1	C6	44.7°	29.8°
O7'	C7'	N4'	C5'	3.6°	180.0°
O7'	C7'	N4'	C3'	179.9°	0.1°
C7'	N4'	C5'	C	67.8°	90.0°
C7'	N4'	C5'	C3'	176.8°	180.0°
C7'	N4'	C5'	H5'1	172.2°	30.0°
C7'	N4'	C5'	H5'2	52.2°	150.0°
C7'	N4'	C3'	C2'	118.8°	90.0°
C7'	N4'	C3'	H3'1	1.2°	150.0°
C7'	N4'	C3'	H3'2	121.2°	30.0°
C	C5'	N4'	H5'1	120.0°	120.0°
C	C5'	N4'	H5'2	120.0°	120.0°
C	C5'	H5'1	H5'2	121.5°	119.9°
C5'	C	O	OXT	145.1°	179.9°
C5'	C	OXT	HXT	147.1°	180.0°
C	C5'	N4'	C3'	108.9°	90.0°
N4'	C5'	H5'1	H5'2	121.5°	120.0°
N4'	C5'	C	O	176.7°	0.0°
N4'	C5'	C	OXT	30.7°	180.0°
C5'	N4'	C3'	C2'	64.7°	90.0°
C5'	N4'	C3'	H3'1	175.3°	30.0°
C5'	N4'	C3'	H3'2	55.3°	150.0°
H5'1	C5'	C	O	56.7°	120.1°
H5'1	C5'	C	OXT	89.3°	60.0°
H5'1	C5'	N4'	C3'	11.1°	150.0°
H5'2	C5'	C	O	63.3°	120.0°
H5'2	C5'	C	OXT	150.7°	59.9°
H5'2	C5'	N4'	C3'	131.0°	30.0°
O	C	OXT	HXT	0.0°	0.1°
N4'	C3'	C2'	H3'1	120.0°	120.0°
N4'	C3'	C2'	H3'2	120.0°	120.0°
N4'	C3'	H3'1	H3'2	119.8°	120.0°
N4'	C3'	C2'	N	64.0°	180.0°
N4'	C3'	C2'	H2'1	176.0°	60.0°
N4'	C3'	C2'	H2'2	56.0°	60.0°
C2'	C3'	H3'1	H3'2	119.8°	120.0°
C3'	C2'	N	H2'1	120.0°	120.0°
C3'	C2'	N	H2'2	120.0°	120.0°
C3'	C2'	H2'1	H2'2	119.2°	120.0°
C3'	C2'	N	H	180.0°	180.0°
C3'	C2'	N	H2	60.0°	60.0°
C3'	C2'	N	H3	60.0°	60.0°
H3'1	C3'	C2'	N	56.0°	60.0°
H3'1	C3'	C2'	H2'1	64.0°	180.0°
H3'1	C3'	C2'	H2'2	176.0°	60.0°
H3'2	C3'	C2'	N	176.0°	60.0°
H3'2	C3'	C2'	H2'1	56.0°	60.0°
H3'2	C3'	C2'	H2'2	64.0°	180.0°
N	C2'	H2'1	H2'2	119.2°	120.0°
C2'	N	H	H2	120.0°	120.0°
C2'	N	H	H3	120.0°	120.0°
C2'	N	H2	H3	120.0°	120.0°
H2'1	C2'	N	H	60.0°	60.0°
H2'1	C2'	N	H2	180.0°	179.9°
H2'1	C2'	N	H3	60.0°	60.0°
H2'2	C2'	N	H	60.0°	60.0°
H2'2	C2'	N	H2	60.0°	60.0°
H2'2	C2'	N	H3	180.0°	180.0°
H	N	H2	H3	120.0°	120.0°
N1	C2	N3	O2	179.1°	179.9°
N1	C2	N3	C4	7.3°	0.1°
C2	N1	C6	C5	0.2°	0.5°
C2	N1	C6	H6	179.8°	179.7°
C6	N1	C2	N3	3.2°	0.3°
C6	N1	C2	O2	177.7°	179.7°
N1	C6	C5	C4	0.5°	0.5°
N1	C6	C5	H6	180.0°	179.7°
N1	C6	C5	H5	179.5°	179.7°
C2	N3	C4	C5	8.4°	0.0°
C2	N3	C4	N4	176.2°	180.0°
O2	C2	N3	C4	173.6°	180.0°
N3	C4	C5	N4	175.0°	180.0°
N3	C4	C5	C6	5.0°	0.2°
N3	C4	C5	H5	175.1°	179.9°
N3	C4	N4	HN41	0.0°	0.0°
N3	C4	N4	HN42	180.0°	180.0°
C4	C5	C6	H5	180.0°	179.9°
C4	C5	C6	H6	179.5°	179.8°
C5	C4	N4	HN41	175.5°	180.0°
C5	C4	N4	HN42	4.5°	0.0°
N4	C4	C5	C6	180.0°	179.8°
N4	C4	C5	H5	0.0°	0.1°
C4	N4	HN41	HN42	180.0°	180.0°
H5	C5	C6	H6	0.5°	0.1°

Definition date:	1999-07-08
Last modified:	2024-09-27
Release status:	REL
Processing site:	RCSB
Derived from:	1PNN