CGY
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.47Å | |
| C3' | C2' | sing | 1.54Å | 1.53Å | |
| C3' | C4' | sing | 1.54Å | 1.53Å | |
| OP1 | P | doub | 1.48Å | 1.48Å | |
| C2' | C1' | sing | 1.54Å | 1.51Å | |
| C5' | O5' | sing | 1.43Å | 1.45Å | |
| C5' | C4' | sing | 1.53Å | 1.51Å | |
| O5' | P | sing | 1.61Å | 1.60Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| P | OP2 | sing | 1.61Å | 1.49Å | |
| C1' | O4' | sing | 1.44Å | 1.43Å | |
| C1' | C1 | sing | 1.51Å | 1.50Å | |
| C1 | C6 | doub | 1.39Å | 1.39Å | Aromatic |
| C1 | C2 | sing | 1.39Å | 1.38Å | Aromatic |
| C6 | C5 | sing | 1.39Å | 1.39Å | Aromatic |
| ON1 | N5 | sing | 1.46Å | 1.31Å | |
| N1 | C2 | sing | 1.39Å | 1.27Å | |
| C2 | N3 | doub | 1.32Å | 1.35Å | Aromatic |
| C5 | N5 | sing | 1.40Å | 1.25Å | |
| C5 | C4 | doub | 1.40Å | 1.38Å | Aromatic |
| N5 | ON2 | sing | 1.46Å | 1.31Å | |
| N3 | C4 | sing | 1.32Å | 1.35Å | Aromatic |
| C4 | N4 | sing | 1.39Å | 1.27Å | |
| C1' | H1'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2'1 | sing | 1.09Å | 1.10Å | |
| C2' | H2'2 | sing | 1.09Å | 1.10Å | |
| C3' | H3'1 | sing | 1.09Å | 1.10Å | |
| C4' | H4'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C6 | H61 | sing | 1.08Å | 1.08Å | |
| N1 | H12 | sing | 0.97Å | 1.00Å | |
| N1 | H11 | sing | 0.97Å | 1.00Å | |
| N4 | H41 | sing | 0.97Å | 1.00Å | |
| N4 | H42 | sing | 0.97Å | 1.00Å | |
| O3' | H3'2 | sing | 0.97Å | 0.95Å | |
| ON1 | HN11 | sing | 0.97Å | 0.95Å | |
| ON2 | HN21 | sing | 0.97Å | 0.95Å | |
| OP2 | H1 | sing | 0.97Å | 0.95Å | |
| P | OP3 | sing | 1.61Å | 1.59Å | |
| OP3 | HO3' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C2' | 116.9° | 110.5° |
| O3' | C3' | C4' | 116.6° | 110.5° |
| O3' | C3' | H3'1 | 107.8° | 110.6° |
| C3' | O3' | H3'2 | 109.5° | 114.0° |
| C2' | C3' | C4' | 100.7° | 104.0° |
| C3' | C2' | C1' | 106.4° | 104.1° |
| C3' | C2' | H2'1 | 110.2° | 110.5° |
| C3' | C2' | H2'2 | 110.3° | 110.6° |
| C2' | C3' | H3'1 | 107.0° | 110.6° |
| C3' | C4' | C5' | 114.3° | 110.4° |
| C3' | C4' | O4' | 103.6° | 104.8° |
| C4' | C3' | H3'1 | 107.0° | 110.5° |
| C3' | C4' | H4'1 | 108.5° | 110.4° |
| OP1 | P | O5' | 106.5° | 109.5° |
| OP1 | P | OP2 | 118.1° | 109.5° |
| OP1 | P | OP3 | 112.7° | 109.5° |
| C2' | C1' | O4' | 106.4° | 104.8° |
| C2' | C1' | C1 | 112.4° | 110.4° |
| C2' | C1' | H1'1 | 107.9° | 110.5° |
| C1' | C2' | H2'1 | 110.2° | 110.5° |
| C1' | C2' | H2'2 | 110.2° | 110.5° |
| O5' | C5' | C4' | 110.4° | 109.5° |
| C5' | O5' | P | 122.6° | 123.0° |
| O5' | C5' | H5'2 | 109.3° | 109.4° |
| O5' | C5' | H5'1 | 109.2° | 109.4° |
| C5' | C4' | O4' | 112.2° | 110.4° |
| C5' | C4' | H4'1 | 108.7° | 110.4° |
| C4' | C5' | H5'2 | 109.2° | 109.5° |
| C4' | C5' | H5'1 | 109.3° | 109.5° |
| O5' | P | OP2 | 111.0° | 109.5° |
| O5' | P | OP3 | 103.6° | 109.4° |
| C4' | O4' | C1' | 106.6° | 105.3° |
| O4' | C4' | H4'1 | 109.4° | 110.3° |
| P | OP2 | H1 | 109.5° | 114.0° |
| OP2 | P | OP3 | 104.1° | 109.5° |
| O4' | C1' | C1 | 113.1° | 110.4° |
| O4' | C1' | H1'1 | 108.9° | 110.3° |
| C1' | C1 | C6 | 117.5° | 120.3° |
| C1' | C1 | C2 | 124.5° | 120.4° |
| C1 | C1' | H1'1 | 108.0° | 110.3° |
| C6 | C1 | C2 | 118.0° | 119.3° |
| C1 | C6 | C5 | 119.4° | 118.5° |
| C1 | C6 | H61 | 120.3° | 120.8° |
| C1 | C2 | N1 | 119.0° | 119.5° |
| C1 | C2 | N3 | 123.7° | 120.8° |
| C6 | C5 | N5 | 121.5° | 120.4° |
| C6 | C5 | C4 | 118.2° | 119.2° |
| C5 | C6 | H61 | 120.3° | 120.8° |
| ON1 | N5 | C5 | 120.1° | 111.0° |
| ON1 | N5 | ON2 | 119.8° | 111.0° |
| N5 | ON1 | HN11 | 109.5° | 114.0° |
| N1 | C2 | N3 | 117.3° | 119.6° |
| C2 | N1 | H12 | 109.5° | 120.1° |
| C2 | N1 | H11 | 109.5° | 120.0° |
| C2 | N3 | C4 | 117.2° | 121.6° |
| N5 | C5 | C4 | 120.2° | 120.4° |
| C5 | N5 | ON2 | 120.0° | 111.0° |
| C5 | C4 | N3 | 123.5° | 120.6° |
| C5 | C4 | N4 | 118.3° | 119.7° |
| N5 | ON2 | HN21 | 109.5° | 114.0° |
| N3 | C4 | N4 | 118.2° | 119.7° |
| C4 | N4 | H41 | 109.5° | 120.0° |
| C4 | N4 | H42 | 109.5° | 120.0° |
| H2'1 | C2' | H2'2 | 109.5° | 110.4° |
| H5'2 | C5' | H5'1 | 109.5° | 109.5° |
| H12 | N1 | H11 | 109.5° | 119.9° |
| H41 | N4 | H42 | 109.4° | 120.0° |
| P | OP3 | HO3' | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C2' | C4' | 127.3° | 118.6° |
| O3' | C3' | C2' | H3'1 | 120.9° | 122.8° |
| O3' | C3' | C4' | H3'1 | 120.7° | 122.7° |
| O3' | C3' | C2' | C1' | 150.2° | 118.6° |
| O3' | C3' | C4' | C5' | 72.2° | 98.5° |
| O3' | C3' | C4' | O4' | 165.4° | 142.6° |
| O3' | C3' | C2' | H2'1 | 90.3° | 0.0° |
| O3' | C3' | C2' | H2'2 | 30.7° | 122.7° |
| O3' | C3' | C4' | H4'1 | 49.2° | 23.8° |
| C2' | C3' | C4' | H3'1 | 111.7° | 118.7° |
| C3' | C2' | C1' | H2'1 | 119.5° | 118.7° |
| C3' | C2' | C1' | H2'2 | 119.5° | 118.8° |
| C2' | C3' | C4' | C5' | 160.2° | 142.8° |
| C2' | C3' | C4' | O4' | 37.8° | 24.0° |
| C3' | C2' | C1' | O4' | 0.3° | 23.9° |
| C3' | C2' | C1' | C1 | 124.6° | 142.8° |
| C3' | C2' | C1' | H1'1 | 116.4° | 94.9° |
| C3' | C2' | H2'1 | H2'2 | 121.4° | 122.7° |
| C2' | C3' | C4' | H4'1 | 78.4° | 94.8° |
| C2' | C3' | O3' | H3'2 | 180.0° | 61.5° |
| C4' | C3' | C2' | C1' | 22.8° | 0.0° |
| C3' | C4' | C5' | O5' | 43.7° | 175.0° |
| C3' | C4' | C5' | O4' | 117.5° | 115.4° |
| C3' | C4' | C5' | H4'1 | 121.3° | 122.3° |
| C3' | C4' | O4' | H4'1 | 115.6° | 118.9° |
| C3' | C4' | O4' | C1' | 40.3° | 40.5° |
| C4' | C3' | C2' | H2'1 | 142.3° | 118.7° |
| C4' | C3' | C2' | H2'2 | 96.7° | 118.7° |
| C3' | C4' | C5' | H5'2 | 76.4° | 55.0° |
| C3' | C4' | C5' | H5'1 | 163.8° | 65.0° |
| C4' | C3' | O3' | H3'2 | 60.8° | 176.1° |
| OP1 | P | O5' | C5' | 55.8° | 55.0° |
| OP1 | P | O5' | OP2 | 129.8° | 120.0° |
| OP1 | P | O5' | OP3 | 119.0° | 120.0° |
| OP1 | P | OP2 | OP3 | 125.8° | 120.0° |
| OP1 | P | OP2 | H1 | 0.0° | 180.0° |
| OP1 | P | OP3 | HO3' | 0.0° | 60.0° |
| C2' | C1' | O4' | C4' | 25.1° | 40.4° |
| C2' | C1' | O4' | C1 | 123.9° | 118.9° |
| C2' | C1' | O4' | H1'1 | 116.0° | 118.9° |
| C2' | C1' | C1 | H1'1 | 118.9° | 122.4° |
| C2' | C1' | C1 | C6 | 70.8° | 91.8° |
| C2' | C1' | C1 | C2 | 107.9° | 88.4° |
| C1' | C2' | H2'1 | H2'2 | 121.4° | 122.5° |
| C1' | C2' | C3' | H3'1 | 88.9° | 118.6° |
| O5' | C5' | C4' | H5'2 | 120.2° | 120.0° |
| O5' | C5' | C4' | H5'1 | 120.1° | 120.0° |
| O5' | C5' | C4' | O4' | 73.8° | 69.6° |
| C5' | O5' | P | OP2 | 174.4° | 65.0° |
| O5' | C5' | C4' | H4'1 | 165.1° | 52.7° |
| O5' | C5' | H5'2 | H5'1 | 119.6° | 119.9° |
| C5' | O5' | P | OP3 | 63.2° | 175.0° |
| C4' | C5' | O5' | P | 163.1° | 180.0° |
| C5' | C4' | O4' | H4'1 | 120.7° | 122.3° |
| C5' | C4' | O4' | C1' | 164.0° | 159.3° |
| C5' | C4' | C3' | H3'1 | 48.5° | 24.2° |
| C4' | C5' | H5'2 | H5'1 | 119.6° | 120.0° |
| O5' | P | OP2 | OP3 | 110.8° | 120.0° |
| P | O5' | C5' | H5'2 | 76.8° | 60.0° |
| P | O5' | C5' | H5'1 | 42.9° | 60.0° |
| O5' | P | OP2 | H1 | 123.3° | 60.0° |
| O5' | P | OP3 | HO3' | 114.6° | 180.0° |
| C4' | O4' | C1' | C1 | 149.0° | 159.3° |
| C4' | O4' | C1' | H1'1 | 90.9° | 78.5° |
| O4' | C4' | C3' | H3'1 | 73.9° | 94.7° |
| O4' | C4' | C5' | H5'2 | 166.1° | 170.4° |
| O4' | C4' | C5' | H5'1 | 46.4° | 50.4° |
| OP2 | P | OP3 | HO3' | 129.2° | 60.0° |
| O4' | C1' | C1 | H1'1 | 120.6° | 122.2° |
| O4' | C1' | C1 | C6 | 49.7° | 23.6° |
| O4' | C1' | C1 | C2 | 131.6° | 156.2° |
| O4' | C1' | C2' | H2'1 | 119.2° | 142.7° |
| O4' | C1' | C2' | H2'2 | 119.8° | 94.9° |
| C1' | O4' | C4' | H4'1 | 75.3° | 78.4° |
| C1' | C1 | C6 | C2 | 178.8° | 179.8° |
| C1' | C1 | C6 | C5 | 179.3° | 179.8° |
| C1' | C1 | C2 | N1 | 1.0° | 0.2° |
| C1' | C1 | C2 | N3 | 179.4° | 179.8° |
| C1 | C1' | C2' | H2'1 | 5.1° | 98.5° |
| C1 | C1' | C2' | H2'2 | 115.9° | 24.0° |
| C1' | C1 | C6 | H61 | 0.7° | 0.3° |
| C1 | C6 | C5 | H61 | 180.0° | 180.0° |
| C6 | C1 | C2 | N1 | 179.7° | 180.0° |
| C6 | C1 | C2 | N3 | 0.6° | 0.0° |
| C1 | C6 | C5 | N5 | 179.5° | 180.0° |
| C1 | C6 | C5 | C4 | 0.3° | 0.0° |
| C6 | C1 | C1' | H1'1 | 170.2° | 145.8° |
| C2 | C1 | C6 | C5 | 0.5° | 0.0° |
| C1 | C2 | N1 | N3 | 179.7° | 180.0° |
| C1 | C2 | N3 | C4 | 0.5° | 0.0° |
| C2 | C1 | C1' | H1'1 | 11.0° | 34.0° |
| C2 | C1 | C6 | H61 | 179.5° | 180.0° |
| C1 | C2 | N1 | H12 | 179.7° | 0.0° |
| C1 | C2 | N1 | H11 | 60.3° | 180.0° |
| C6 | C5 | N5 | ON1 | 7.3° | 39.5° |
| C6 | C5 | N5 | C4 | 179.8° | 180.0° |
| C6 | C5 | N5 | ON2 | 173.4° | 84.5° |
| C6 | C5 | C4 | N3 | 0.1° | 0.1° |
| C6 | C5 | C4 | N4 | 179.8° | 180.0° |
| ON1 | N5 | C5 | ON2 | 179.3° | 124.0° |
| ON1 | N5 | C5 | C4 | 172.5° | 140.5° |
| ON1 | N5 | ON2 | HN21 | 180.0° | 56.0° |
| N1 | C2 | N3 | C4 | 179.9° | 180.0° |
| C2 | N1 | H12 | H11 | 120.0° | 180.0° |
| C2 | N3 | C4 | C5 | 0.2° | 0.1° |
| C2 | N3 | C4 | N4 | 179.9° | 180.0° |
| N3 | C2 | N1 | H12 | 0.0° | 180.0° |
| N3 | C2 | N1 | H11 | 120.0° | 0.0° |
| N5 | C5 | C4 | N3 | 179.7° | 180.0° |
| N5 | C5 | C4 | N4 | 0.0° | 0.0° |
| N5 | C5 | C6 | H61 | 0.5° | 0.0° |
| C5 | N5 | ON1 | HN11 | 180.0° | 180.0° |
| C5 | N5 | ON2 | HN21 | 0.6° | 180.0° |
| C4 | C5 | N5 | ON2 | 6.8° | 95.6° |
| C5 | C4 | N3 | N4 | 179.7° | 180.0° |
| C4 | C5 | C6 | H61 | 179.7° | 180.0° |
| C5 | C4 | N4 | H41 | 179.7° | 5.5° |
| C5 | C4 | N4 | H42 | 59.7° | 174.5° |
| ON2 | N5 | ON1 | HN11 | 0.6° | 56.0° |
| N3 | C4 | N4 | H41 | 0.0° | 174.5° |
| N3 | C4 | N4 | H42 | 120.0° | 5.4° |
| C4 | N4 | H41 | H42 | 120.0° | 180.0° |
| H1'1 | C1' | C2' | H2'1 | 124.1° | 23.8° |
| H1'1 | C1' | C2' | H2'2 | 3.1° | 146.3° |
| H2'1 | C2' | C3' | H3'1 | 30.6° | 122.7° |
| H2'2 | C2' | C3' | H3'1 | 151.6° | 0.1° |
| H3'1 | C3' | C4' | H4'1 | 169.9° | 146.5° |
| H3'1 | C3' | O3' | H3'2 | 59.5° | 61.2° |
| H4'1 | C4' | C5' | H5'2 | 44.9° | 67.4° |
| H4'1 | C4' | C5' | H5'1 | 74.8° | 172.6° |
| H1 | OP2 | P | OP3 | 125.8° | 60.0° |
