C5X

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C1	C2	sing	1.53Å	1.53Å
C1	O1	sing	1.43Å	1.41Å
C1	O5	sing	1.43Å	1.42Å
C1	H1	sing	1.09Å	1.12Å
C2	C3	sing	1.53Å	1.53Å
C2	O2	sing	1.43Å	1.42Å
C2	H2	sing	1.09Å	1.12Å
C3	C4	sing	1.53Å	1.54Å
C3	O3	sing	1.43Å	1.40Å
C3	H3	sing	1.09Å	1.11Å
C4	C5	sing	1.53Å	1.54Å
C4	O4	sing	1.43Å	1.42Å
C4	H4	sing	1.09Å	1.12Å
C5	O5	sing	1.43Å	1.43Å
C5	H51	sing	1.09Å	1.11Å
C5	H52	sing	1.09Å	1.12Å
O1	C1'	sing	1.43Å	1.45Å
O2	HO2	sing	0.97Å	0.95Å
O3	HO3	sing	0.97Å	0.95Å
O4	HO4	sing	0.97Å	0.95Å
C1'	C2'	sing	1.53Å	1.55Å
C1'	H1'1	sing	1.09Å	1.12Å
C1'	H1'2	sing	1.09Å	1.11Å
C2'	C3'	sing	1.53Å	1.54Å
C2'	H2'1	sing	1.09Å	1.11Å
C2'	H2'2	sing	1.09Å	1.12Å
C3'	C4'	sing	1.53Å	1.54Å
C3'	H3'1	sing	1.09Å	1.12Å
C3'	H3'2	sing	1.09Å	1.12Å
C4'	C5'	sing	1.53Å	1.51Å
C4'	O'	sing	1.43Å	1.42Å
C4'	H4'	sing	1.09Å	1.11Å
C5'	O'	sing	1.43Å	2.38Å
C5'	H5'1	sing	1.09Å	1.12Å
C5'	H5'2	sing	1.09Å	1.12Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C2	C1	O1	111.7°	109.4°
C2	C1	O5	108.8°	109.8°
C2	C1	H1	108.9°	109.4°
C1	C2	C3	106.5°	109.1°
C1	C2	O2	112.5°	109.6°
C1	C2	H2	109.5°	109.5°
O1	C1	O5	110.6°	109.5°
O1	C1	H1	106.9°	109.4°
C1	O1	C1'	116.7°	106.9°
O5	C1	H1	110.0°	109.4°
C1	O5	C5	114.1°	107.6°
C3	C2	O2	109.7°	109.6°
C3	C2	H2	112.4°	109.4°
C2	C3	C4	110.7°	108.7°
C2	C3	O3	111.3°	109.6°
C2	C3	H3	107.1°	109.6°
O2	C2	H2	106.3°	109.5°
C2	O2	HO2	112.6°	106.8°
C4	C3	O3	108.7°	109.9°
C4	C3	H3	109.8°	109.4°
C3	C4	C5	111.0°	109.1°
C3	C4	O4	108.9°	109.6°
C3	C4	H4	108.7°	109.5°
O3	C3	H3	109.2°	109.6°
C3	O3	HO3	111.3°	106.8°
C5	C4	O4	109.0°	109.6°
C5	C4	H4	108.5°	109.5°
C4	C5	O5	110.2°	109.9°
C4	C5	H51	112.0°	109.4°
C4	C5	H52	112.0°	109.5°
O4	C4	H4	110.7°	109.5°
C4	O4	HO4	108.9°	106.8°
O5	C5	H51	111.9°	109.4°
O5	C5	H52	111.9°	109.4°
H51	C5	H52	98.5°	109.3°
O1	C1'	C2'	110.8°	109.6°
O1	C1'	H1'1	111.7°	109.4°
O1	C1'	H1'2	111.7°	109.4°
C2'	C1'	H1'1	111.7°	109.5°
C2'	C1'	H1'2	111.7°	109.5°
C1'	C2'	C3'	113.0°	109.5°
C1'	C2'	H2'1	111.0°	109.5°
C1'	C2'	H2'2	111.0°	109.5°
H1'1	C1'	H1'2	98.7°	109.4°
C3'	C2'	H2'1	110.9°	109.4°
C3'	C2'	H2'2	110.9°	109.5°
C2'	C3'	C4'	112.4°	109.5°
C2'	C3'	H3'1	111.1°	109.4°
C2'	C3'	H3'2	111.1°	109.5°
H2'1	C2'	H2'2	99.4°	109.4°
C4'	C3'	H3'1	111.1°	109.5°
C4'	C3'	H3'2	111.1°	109.5°
C3'	C4'	C5'	115.0°	117.8°
C3'	C4'	O'	108.0°	117.8°
C3'	C4'	H4'	106.6°	115.7°
H3'1	C3'	H3'2	99.2°	109.4°
C5'	C4'	O'	109.0°	57.7°
C5'	C4'	H4'	105.6°	117.7°
C4'	C5'	O'	34.3°	57.6°
C4'	C5'	H5'1	151.8°	117.8°
C4'	C5'	H5'2	151.9°	117.8°
O'	C4'	H4'	112.9°	117.8°
C4'	O'	C5'	36.7°	64.7°
O'	C5'	H5'1	151.9°	117.8°
O'	C5'	H5'2	151.9°	117.8°
H5'1	C5'	H5'2	45.3°	115.7°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C2	C1	O1	O5	121.3°	120.3°
C2	C1	O1	H1	119.0°	119.8°
C2	C1	O5	H1	119.1°	120.1°
C1	C2	C3	O2	122.1°	120.1°
C1	C2	C3	H2	119.9°	119.8°
C1	C2	O2	H2	119.9°	120.2°
C1	C2	C3	C4	57.6°	53.5°
C1	C2	C3	O3	178.6°	173.6°
C1	C2	C3	H3	62.1°	66.0°
C2	C1	O5	C5	65.8°	67.5°
C2	C1	O1	C1'	179.8°	179.7°
C1	C2	O2	HO2	180.0°	59.9°
O1	C1	O5	H1	117.9°	119.9°
O1	C1	C2	C3	174.7°	178.7°
O1	C1	C2	O2	54.5°	58.6°
O1	C1	C2	H2	63.5°	61.5°
O1	C1	O5	C5	171.2°	172.4°
C1	O1	C1'	C2'	160.3°	180.0°
C1	O1	C1'	H1'1	35.1°	60.0°
C1	O1	C1'	H1'2	74.5°	59.9°
O5	C1	C2	C3	62.9°	61.1°
O5	C1	C2	O2	176.9°	178.8°
O5	C1	C2	H2	58.9°	58.6°
C1	O5	C5	C4	58.3°	67.6°
C1	O5	C5	H51	67.0°	52.5°
C1	O5	C5	H52	176.4°	172.2°
O5	C1	O1	C1'	58.9°	60.0°
H1	C1	C2	C3	56.9°	58.9°
H1	C1	C2	O2	63.3°	61.2°
H1	C1	C2	H2	178.7°	178.6°
H1	C1	O5	C5	53.4°	52.5°
H1	C1	O1	C1'	60.8°	59.9°
C3	C2	O2	H2	121.8°	120.0°
C2	C3	C4	O3	122.5°	119.9°
C2	C3	C4	H3	118.0°	119.6°
C2	C3	O3	H3	118.0°	120.3°
C2	C3	C4	C5	52.3°	53.5°
C2	C3	C4	O4	172.3°	173.5°
C2	C3	C4	H4	67.0°	66.4°
C3	C2	O2	HO2	61.7°	179.6°
C2	C3	O3	HO3	180.0°	180.0°
O2	C2	C3	C4	179.6°	173.6°
O2	C2	C3	O3	59.4°	66.3°
O2	C2	C3	H3	59.9°	54.0°
H2	C2	C3	C4	62.4°	66.3°
H2	C2	C3	O3	58.6°	53.8°
H2	C2	C3	H3	177.9°	174.2°
H2	C2	O2	HO2	60.1°	60.3°
C4	C3	O3	H3	119.8°	120.3°
C3	C4	C5	O4	120.0°	120.0°
C3	C4	C5	H4	119.4°	119.9°
C3	C4	O4	H4	119.4°	120.2°
C3	C4	C5	O5	50.0°	61.1°
C3	C4	C5	H51	75.2°	59.0°
C3	C4	C5	H52	175.2°	178.7°
C4	C3	O3	HO3	57.8°	60.6°
C3	C4	O4	HO4	180.0°	179.8°
O3	C3	C4	C5	174.8°	173.4°
O3	C3	C4	O4	65.2°	66.6°
O3	C3	C4	H4	55.5°	53.6°
H3	C3	C4	C5	65.8°	66.1°
H3	C3	C4	O4	54.3°	53.9°
H3	C3	C4	H4	174.9°	174.0°
H3	C3	O3	HO3	62.0°	59.7°
C5	C4	O4	H4	119.3°	120.2°
C4	C5	O5	H51	125.3°	120.1°
C4	C5	O5	H52	125.3°	120.2°
C4	C5	H51	H52	117.9°	119.8°
C5	C4	O4	HO4	58.7°	60.2°
O4	C4	C5	O5	170.0°	178.9°
O4	C4	C5	H51	44.8°	61.0°
O4	C4	C5	H52	64.7°	58.7°
H4	C4	C5	O5	69.4°	58.7°
H4	C4	C5	H51	165.4°	178.8°
H4	C4	C5	H52	55.9°	61.5°
H4	C4	O4	HO4	60.6°	60.0°
O5	C5	H51	H52	117.8°	119.8°
O1	C1'	C2'	H1'1	125.3°	120.0°
O1	C1'	C2'	H1'2	125.3°	120.0°
O1	C1'	H1'1	H1'2	117.7°	119.9°
O1	C1'	C2'	C3'	80.7°	180.0°
O1	C1'	C2'	H2'1	44.6°	60.0°
O1	C1'	C2'	H2'2	154.1°	59.9°
C2'	C1'	H1'1	H1'2	117.6°	120.0°
C1'	C2'	C3'	H2'1	125.3°	120.0°
C1'	C2'	C3'	H2'2	125.3°	120.1°
C1'	C2'	H2'1	H2'2	116.8°	120.0°
C1'	C2'	C3'	C4'	55.8°	180.0°
C1'	C2'	C3'	H3'1	178.9°	60.0°
C1'	C2'	C3'	H3'2	69.5°	59.9°
H1'1	C1'	C2'	C3'	154.0°	60.0°
H1'1	C1'	C2'	H2'1	80.7°	180.0°
H1'1	C1'	C2'	H2'2	28.8°	60.1°
H1'2	C1'	C2'	C3'	44.6°	59.9°
H1'2	C1'	C2'	H2'1	169.9°	60.0°
H1'2	C1'	C2'	H2'2	80.6°	180.0°
C3'	C2'	H2'1	H2'2	116.7°	120.0°
C2'	C3'	C4'	H3'1	125.3°	120.0°
C2'	C3'	C4'	H3'2	125.3°	120.1°
C2'	C3'	H3'1	H3'2	117.0°	119.9°
C2'	C3'	C4'	C5'	162.7°	178.6°
C2'	C3'	C4'	O'	75.4°	112.5°
C2'	C3'	C4'	H4'	46.1°	34.5°
H2'1	C2'	C3'	C4'	69.5°	60.0°
H2'1	C2'	C3'	H3'1	55.8°	180.0°
H2'1	C2'	C3'	H3'2	165.2°	60.1°
H2'2	C2'	C3'	C4'	178.9°	59.9°
H2'2	C2'	C3'	H3'1	53.6°	60.1°
H2'2	C2'	C3'	H3'2	55.8°	180.0°
C4'	C3'	H3'1	H3'2	117.0°	120.0°
C3'	C4'	C5'	O'	121.4°	106.9°
C3'	C4'	C5'	H4'	117.1°	146.3°
C3'	C4'	O'	H4'	117.6°	146.3°
C3'	C4'	C5'	H5'1	3.9°	0.0°
C3'	C4'	C5'	H5'2	113.3°	146.3°
H3'1	C3'	C4'	C5'	72.0°	58.6°
H3'1	C3'	C4'	O'	49.9°	7.5°
H3'1	C3'	C4'	H4'	171.4°	154.4°
H3'2	C3'	C4'	C5'	37.4°	61.3°
H3'2	C3'	C4'	O'	159.3°	127.4°
H3'2	C3'	C4'	H4'	79.2°	85.6°
C5'	C4'	O'	H4'	116.9°	106.8°
C4'	C5'	O'	H5'1	125.2°	106.8°
C4'	C5'	O'	H5'2	125.3°	106.9°
C4'	C5'	H5'1	H5'2	141.3°	147.0°
H4'	C4'	C5'	H5'1	113.3°	146.2°
H4'	C4'	C5'	H5'2	3.8°	0.0°
O'	C5'	H5'1	H5'2	141.3°	147.0°

Definition date:	1999-07-08
Last modified:	2020-07-17
Release status:	REL
Processing site:	EBI
Derived from:	1RED