C5X
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
C1 | C2 | sing | 1.53Å | 1.53Å | |
C1 | O1 | sing | 1.43Å | 1.41Å | |
C1 | O5 | sing | 1.43Å | 1.42Å | |
C1 | H1 | sing | 1.09Å | 1.12Å | |
C2 | C3 | sing | 1.53Å | 1.53Å | |
C2 | O2 | sing | 1.43Å | 1.42Å | |
C2 | H2 | sing | 1.09Å | 1.12Å | |
C3 | C4 | sing | 1.53Å | 1.54Å | |
C3 | O3 | sing | 1.43Å | 1.40Å | |
C3 | H3 | sing | 1.09Å | 1.11Å | |
C4 | C5 | sing | 1.53Å | 1.54Å | |
C4 | O4 | sing | 1.43Å | 1.42Å | |
C4 | H4 | sing | 1.09Å | 1.12Å | |
C5 | O5 | sing | 1.43Å | 1.43Å | |
C5 | H51 | sing | 1.09Å | 1.11Å | |
C5 | H52 | sing | 1.09Å | 1.12Å | |
O1 | C1' | sing | 1.43Å | 1.45Å | |
O2 | HO2 | sing | 0.97Å | 0.95Å | |
O3 | HO3 | sing | 0.97Å | 0.95Å | |
O4 | HO4 | sing | 0.97Å | 0.95Å | |
C1' | C2' | sing | 1.53Å | 1.55Å | |
C1' | H1'1 | sing | 1.09Å | 1.12Å | |
C1' | H1'2 | sing | 1.09Å | 1.11Å | |
C2' | C3' | sing | 1.53Å | 1.54Å | |
C2' | H2'1 | sing | 1.09Å | 1.11Å | |
C2' | H2'2 | sing | 1.09Å | 1.12Å | |
C3' | C4' | sing | 1.53Å | 1.54Å | |
C3' | H3'1 | sing | 1.09Å | 1.12Å | |
C3' | H3'2 | sing | 1.09Å | 1.12Å | |
C4' | C5' | sing | 1.53Å | 1.51Å | |
C4' | O' | sing | 1.43Å | 1.42Å | |
C4' | H4' | sing | 1.09Å | 1.11Å | |
C5' | O' | sing | 1.43Å | 2.38Å | |
C5' | H5'1 | sing | 1.09Å | 1.12Å | |
C5' | H5'2 | sing | 1.09Å | 1.12Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C2 | C1 | O1 | 111.7° | 109.4° |
C2 | C1 | O5 | 108.8° | 109.8° |
C2 | C1 | H1 | 108.9° | 109.4° |
C1 | C2 | C3 | 106.5° | 109.1° |
C1 | C2 | O2 | 112.5° | 109.6° |
C1 | C2 | H2 | 109.5° | 109.5° |
O1 | C1 | O5 | 110.6° | 109.5° |
O1 | C1 | H1 | 106.9° | 109.4° |
C1 | O1 | C1' | 116.7° | 106.9° |
O5 | C1 | H1 | 110.0° | 109.4° |
C1 | O5 | C5 | 114.1° | 107.6° |
C3 | C2 | O2 | 109.7° | 109.6° |
C3 | C2 | H2 | 112.4° | 109.4° |
C2 | C3 | C4 | 110.7° | 108.7° |
C2 | C3 | O3 | 111.3° | 109.6° |
C2 | C3 | H3 | 107.1° | 109.6° |
O2 | C2 | H2 | 106.3° | 109.5° |
C2 | O2 | HO2 | 112.6° | 106.8° |
C4 | C3 | O3 | 108.7° | 109.9° |
C4 | C3 | H3 | 109.8° | 109.4° |
C3 | C4 | C5 | 111.0° | 109.1° |
C3 | C4 | O4 | 108.9° | 109.6° |
C3 | C4 | H4 | 108.7° | 109.5° |
O3 | C3 | H3 | 109.2° | 109.6° |
C3 | O3 | HO3 | 111.3° | 106.8° |
C5 | C4 | O4 | 109.0° | 109.6° |
C5 | C4 | H4 | 108.5° | 109.5° |
C4 | C5 | O5 | 110.2° | 109.9° |
C4 | C5 | H51 | 112.0° | 109.4° |
C4 | C5 | H52 | 112.0° | 109.5° |
O4 | C4 | H4 | 110.7° | 109.5° |
C4 | O4 | HO4 | 108.9° | 106.8° |
O5 | C5 | H51 | 111.9° | 109.4° |
O5 | C5 | H52 | 111.9° | 109.4° |
H51 | C5 | H52 | 98.5° | 109.3° |
O1 | C1' | C2' | 110.8° | 109.6° |
O1 | C1' | H1'1 | 111.7° | 109.4° |
O1 | C1' | H1'2 | 111.7° | 109.4° |
C2' | C1' | H1'1 | 111.7° | 109.5° |
C2' | C1' | H1'2 | 111.7° | 109.5° |
C1' | C2' | C3' | 113.0° | 109.5° |
C1' | C2' | H2'1 | 111.0° | 109.5° |
C1' | C2' | H2'2 | 111.0° | 109.5° |
H1'1 | C1' | H1'2 | 98.7° | 109.4° |
C3' | C2' | H2'1 | 110.9° | 109.4° |
C3' | C2' | H2'2 | 110.9° | 109.5° |
C2' | C3' | C4' | 112.4° | 109.5° |
C2' | C3' | H3'1 | 111.1° | 109.4° |
C2' | C3' | H3'2 | 111.1° | 109.5° |
H2'1 | C2' | H2'2 | 99.4° | 109.4° |
C4' | C3' | H3'1 | 111.1° | 109.5° |
C4' | C3' | H3'2 | 111.1° | 109.5° |
C3' | C4' | C5' | 115.0° | 117.8° |
C3' | C4' | O' | 108.0° | 117.8° |
C3' | C4' | H4' | 106.6° | 115.7° |
H3'1 | C3' | H3'2 | 99.2° | 109.4° |
C5' | C4' | O' | 109.0° | 57.7° |
C5' | C4' | H4' | 105.6° | 117.7° |
C4' | C5' | O' | 34.3° | 57.6° |
C4' | C5' | H5'1 | 151.8° | 117.8° |
C4' | C5' | H5'2 | 151.9° | 117.8° |
O' | C4' | H4' | 112.9° | 117.8° |
C4' | O' | C5' | 36.7° | 64.7° |
O' | C5' | H5'1 | 151.9° | 117.8° |
O' | C5' | H5'2 | 151.9° | 117.8° |
H5'1 | C5' | H5'2 | 45.3° | 115.7° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
C2 | C1 | O1 | O5 | 121.3° | 120.3° |
C2 | C1 | O1 | H1 | 119.0° | 119.8° |
C2 | C1 | O5 | H1 | 119.1° | 120.1° |
C1 | C2 | C3 | O2 | 122.1° | 120.1° |
C1 | C2 | C3 | H2 | 119.9° | 119.8° |
C1 | C2 | O2 | H2 | 119.9° | 120.2° |
C1 | C2 | C3 | C4 | 57.6° | 53.5° |
C1 | C2 | C3 | O3 | 178.6° | 173.6° |
C1 | C2 | C3 | H3 | 62.1° | 66.0° |
C2 | C1 | O5 | C5 | 65.8° | 67.5° |
C2 | C1 | O1 | C1' | 179.8° | 179.7° |
C1 | C2 | O2 | HO2 | 180.0° | 59.9° |
O1 | C1 | O5 | H1 | 117.9° | 119.9° |
O1 | C1 | C2 | C3 | 174.7° | 178.7° |
O1 | C1 | C2 | O2 | 54.5° | 58.6° |
O1 | C1 | C2 | H2 | 63.5° | 61.5° |
O1 | C1 | O5 | C5 | 171.2° | 172.4° |
C1 | O1 | C1' | C2' | 160.3° | 180.0° |
C1 | O1 | C1' | H1'1 | 35.1° | 60.0° |
C1 | O1 | C1' | H1'2 | 74.5° | 59.9° |
O5 | C1 | C2 | C3 | 62.9° | 61.1° |
O5 | C1 | C2 | O2 | 176.9° | 178.8° |
O5 | C1 | C2 | H2 | 58.9° | 58.6° |
C1 | O5 | C5 | C4 | 58.3° | 67.6° |
C1 | O5 | C5 | H51 | 67.0° | 52.5° |
C1 | O5 | C5 | H52 | 176.4° | 172.2° |
O5 | C1 | O1 | C1' | 58.9° | 60.0° |
H1 | C1 | C2 | C3 | 56.9° | 58.9° |
H1 | C1 | C2 | O2 | 63.3° | 61.2° |
H1 | C1 | C2 | H2 | 178.7° | 178.6° |
H1 | C1 | O5 | C5 | 53.4° | 52.5° |
H1 | C1 | O1 | C1' | 60.8° | 59.9° |
C3 | C2 | O2 | H2 | 121.8° | 120.0° |
C2 | C3 | C4 | O3 | 122.5° | 119.9° |
C2 | C3 | C4 | H3 | 118.0° | 119.6° |
C2 | C3 | O3 | H3 | 118.0° | 120.3° |
C2 | C3 | C4 | C5 | 52.3° | 53.5° |
C2 | C3 | C4 | O4 | 172.3° | 173.5° |
C2 | C3 | C4 | H4 | 67.0° | 66.4° |
C3 | C2 | O2 | HO2 | 61.7° | 179.6° |
C2 | C3 | O3 | HO3 | 180.0° | 180.0° |
O2 | C2 | C3 | C4 | 179.6° | 173.6° |
O2 | C2 | C3 | O3 | 59.4° | 66.3° |
O2 | C2 | C3 | H3 | 59.9° | 54.0° |
H2 | C2 | C3 | C4 | 62.4° | 66.3° |
H2 | C2 | C3 | O3 | 58.6° | 53.8° |
H2 | C2 | C3 | H3 | 177.9° | 174.2° |
H2 | C2 | O2 | HO2 | 60.1° | 60.3° |
C4 | C3 | O3 | H3 | 119.8° | 120.3° |
C3 | C4 | C5 | O4 | 120.0° | 120.0° |
C3 | C4 | C5 | H4 | 119.4° | 119.9° |
C3 | C4 | O4 | H4 | 119.4° | 120.2° |
C3 | C4 | C5 | O5 | 50.0° | 61.1° |
C3 | C4 | C5 | H51 | 75.2° | 59.0° |
C3 | C4 | C5 | H52 | 175.2° | 178.7° |
C4 | C3 | O3 | HO3 | 57.8° | 60.6° |
C3 | C4 | O4 | HO4 | 180.0° | 179.8° |
O3 | C3 | C4 | C5 | 174.8° | 173.4° |
O3 | C3 | C4 | O4 | 65.2° | 66.6° |
O3 | C3 | C4 | H4 | 55.5° | 53.6° |
H3 | C3 | C4 | C5 | 65.8° | 66.1° |
H3 | C3 | C4 | O4 | 54.3° | 53.9° |
H3 | C3 | C4 | H4 | 174.9° | 174.0° |
H3 | C3 | O3 | HO3 | 62.0° | 59.7° |
C5 | C4 | O4 | H4 | 119.3° | 120.2° |
C4 | C5 | O5 | H51 | 125.3° | 120.1° |
C4 | C5 | O5 | H52 | 125.3° | 120.2° |
C4 | C5 | H51 | H52 | 117.9° | 119.8° |
C5 | C4 | O4 | HO4 | 58.7° | 60.2° |
O4 | C4 | C5 | O5 | 170.0° | 178.9° |
O4 | C4 | C5 | H51 | 44.8° | 61.0° |
O4 | C4 | C5 | H52 | 64.7° | 58.7° |
H4 | C4 | C5 | O5 | 69.4° | 58.7° |
H4 | C4 | C5 | H51 | 165.4° | 178.8° |
H4 | C4 | C5 | H52 | 55.9° | 61.5° |
H4 | C4 | O4 | HO4 | 60.6° | 60.0° |
O5 | C5 | H51 | H52 | 117.8° | 119.8° |
O1 | C1' | C2' | H1'1 | 125.3° | 120.0° |
O1 | C1' | C2' | H1'2 | 125.3° | 120.0° |
O1 | C1' | H1'1 | H1'2 | 117.7° | 119.9° |
O1 | C1' | C2' | C3' | 80.7° | 180.0° |
O1 | C1' | C2' | H2'1 | 44.6° | 60.0° |
O1 | C1' | C2' | H2'2 | 154.1° | 59.9° |
C2' | C1' | H1'1 | H1'2 | 117.6° | 120.0° |
C1' | C2' | C3' | H2'1 | 125.3° | 120.0° |
C1' | C2' | C3' | H2'2 | 125.3° | 120.1° |
C1' | C2' | H2'1 | H2'2 | 116.8° | 120.0° |
C1' | C2' | C3' | C4' | 55.8° | 180.0° |
C1' | C2' | C3' | H3'1 | 178.9° | 60.0° |
C1' | C2' | C3' | H3'2 | 69.5° | 59.9° |
H1'1 | C1' | C2' | C3' | 154.0° | 60.0° |
H1'1 | C1' | C2' | H2'1 | 80.7° | 180.0° |
H1'1 | C1' | C2' | H2'2 | 28.8° | 60.1° |
H1'2 | C1' | C2' | C3' | 44.6° | 59.9° |
H1'2 | C1' | C2' | H2'1 | 169.9° | 60.0° |
H1'2 | C1' | C2' | H2'2 | 80.6° | 180.0° |
C3' | C2' | H2'1 | H2'2 | 116.7° | 120.0° |
C2' | C3' | C4' | H3'1 | 125.3° | 120.0° |
C2' | C3' | C4' | H3'2 | 125.3° | 120.1° |
C2' | C3' | H3'1 | H3'2 | 117.0° | 119.9° |
C2' | C3' | C4' | C5' | 162.7° | 178.6° |
C2' | C3' | C4' | O' | 75.4° | 112.5° |
C2' | C3' | C4' | H4' | 46.1° | 34.5° |
H2'1 | C2' | C3' | C4' | 69.5° | 60.0° |
H2'1 | C2' | C3' | H3'1 | 55.8° | 180.0° |
H2'1 | C2' | C3' | H3'2 | 165.2° | 60.1° |
H2'2 | C2' | C3' | C4' | 178.9° | 59.9° |
H2'2 | C2' | C3' | H3'1 | 53.6° | 60.1° |
H2'2 | C2' | C3' | H3'2 | 55.8° | 180.0° |
C4' | C3' | H3'1 | H3'2 | 117.0° | 120.0° |
C3' | C4' | C5' | O' | 121.4° | 106.9° |
C3' | C4' | C5' | H4' | 117.1° | 146.3° |
C3' | C4' | O' | H4' | 117.6° | 146.3° |
C3' | C4' | C5' | H5'1 | 3.9° | 0.0° |
C3' | C4' | C5' | H5'2 | 113.3° | 146.3° |
H3'1 | C3' | C4' | C5' | 72.0° | 58.6° |
H3'1 | C3' | C4' | O' | 49.9° | 7.5° |
H3'1 | C3' | C4' | H4' | 171.4° | 154.4° |
H3'2 | C3' | C4' | C5' | 37.4° | 61.3° |
H3'2 | C3' | C4' | O' | 159.3° | 127.4° |
H3'2 | C3' | C4' | H4' | 79.2° | 85.6° |
C5' | C4' | O' | H4' | 116.9° | 106.8° |
C4' | C5' | O' | H5'1 | 125.2° | 106.8° |
C4' | C5' | O' | H5'2 | 125.3° | 106.9° |
C4' | C5' | H5'1 | H5'2 | 141.3° | 147.0° |
H4' | C4' | C5' | H5'1 | 113.3° | 146.2° |
H4' | C4' | C5' | H5'2 | 3.8° | 0.0° |
O' | C5' | H5'1 | H5'2 | 141.3° | 147.0° |