C5B
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N | CA | sing | 1.45Å | 1.49Å | |
N | HN1 | sing | 1.00Å | 1.00Å | |
N | HN2 | sing | 1.00Å | 1.00Å | |
CA | C | sing | 1.51Å | 1.53Å | |
CA | CB1 | sing | 1.53Å | 1.52Å | |
CA | CB2 | sing | 1.52Å | 1.53Å | |
C | O | doub | 1.22Å | 1.25Å | |
C | OXT | sing | 1.36Å | 1.24Å | |
OXT | HOXT | sing | 0.98Å | 0.95Å | |
CB1 | CD | sing | 1.54Å | 1.52Å | |
CB1 | HB11 | sing | 1.10Å | 1.10Å | |
CB1 | HB12 | sing | 1.10Å | 1.10Å | |
CB2 | CG2 | sing | 1.53Å | 1.53Å | |
CB2 | HB21 | sing | 1.10Å | 1.10Å | |
CB2 | HB22 | sing | 1.10Å | 1.10Å | |
CG2 | CD | sing | 1.53Å | 1.52Å | |
CG2 | HG21 | sing | 1.10Å | 1.10Å | |
CG2 | HG22 | sing | 1.09Å | 1.10Å | |
CD | CE | sing | 1.50Å | 1.52Å | |
CD | HD | sing | 1.10Å | 1.10Å | |
CE | OZ1 | doub | 1.22Å | 1.25Å | |
CE | OZ2 | sing | 1.36Å | 1.25Å | |
OZ2 | HOZ2 | sing | 0.98Å | 0.95Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
CA | N | HN1 | 109.5° | 118.3° |
CA | N | HN2 | 109.5° | 118.3° |
N | CA | C | 113.6° | 106.1° |
N | CA | CB1 | 105.7° | 112.5° |
N | CA | CB2 | 106.3° | 112.4° |
HN1 | N | HN2 | 109.4° | 121.9° |
C | CA | CB1 | 111.7° | 111.2° |
C | CA | CB2 | 110.7° | 111.2° |
CA | C | O | 119.7° | 125.1° |
CA | C | OXT | 119.4° | 110.7° |
CB1 | CA | CB2 | 108.5° | 103.7° |
CA | CB1 | CD | 103.9° | 105.3° |
CA | CB1 | HB11 | 111.4° | 112.1° |
CA | CB1 | HB12 | 112.5° | 111.0° |
CA | CB2 | CG2 | 105.2° | 103.4° |
CA | CB2 | HB21 | 110.9° | 111.0° |
CA | CB2 | HB22 | 111.9° | 113.5° |
O | C | OXT | 120.9° | 124.2° |
C | OXT | HOXT | 109.5° | 111.9° |
CD | CB1 | HB11 | 111.4° | 110.7° |
CD | CB1 | HB12 | 112.6° | 110.7° |
CB1 | CD | CG2 | 105.0° | 106.7° |
CB1 | CD | CE | 110.5° | 110.3° |
CB1 | CD | HD | 112.5° | 111.3° |
HB11 | CB1 | HB12 | 105.3° | 107.1° |
CG2 | CB2 | HB21 | 110.9° | 109.4° |
CG2 | CB2 | HB22 | 111.8° | 111.3° |
CB2 | CG2 | CD | 104.3° | 105.2° |
CB2 | CG2 | HG21 | 111.3° | 109.6° |
CB2 | CG2 | HG22 | 112.4° | 111.4° |
HB21 | CB2 | HB22 | 106.2° | 108.1° |
CD | CG2 | HG21 | 111.3° | 109.5° |
CD | CG2 | HG22 | 112.3° | 113.6° |
CG2 | CD | CE | 111.5° | 110.7° |
CG2 | CD | HD | 111.5° | 110.7° |
HG21 | CG2 | HG22 | 105.5° | 107.5° |
CE | CD | HD | 106.0° | 107.2° |
CD | CE | OZ1 | 119.1° | 125.0° |
CD | CE | OZ2 | 119.5° | 110.7° |
OZ1 | CE | OZ2 | 121.4° | 124.3° |
CE | OZ2 | HOZ2 | 109.5° | 111.9° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
CA | N | HN1 | HN2 | 120.0° | 166.2° |
N | CA | C | CB1 | 119.5° | 122.5° |
N | CA | C | CB2 | 119.6° | 122.5° |
N | CA | CB1 | CB2 | 113.7° | 121.7° |
N | CA | C | O | 17.3° | 117.5° |
N | CA | C | OXT | 163.1° | 62.7° |
N | CA | CB1 | CD | 131.9° | 152.9° |
N | CA | CB1 | HB11 | 11.9° | 86.6° |
N | CA | CB1 | HB12 | 106.1° | 33.1° |
N | CA | CB2 | CG2 | 109.3° | 161.9° |
N | CA | CB2 | HB21 | 130.7° | 44.6° |
N | CA | CB2 | HB22 | 12.3° | 77.4° |
HN1 | N | CA | C | 153.9° | 149.9° |
HN1 | N | CA | CB1 | 83.3° | 88.4° |
HN1 | N | CA | CB2 | 31.9° | 28.2° |
HN2 | N | CA | C | 33.9° | 43.4° |
HN2 | N | CA | CB1 | 156.7° | 78.3° |
HN2 | N | CA | CB2 | 88.1° | 165.2° |
C | CA | CB1 | CB2 | 122.2° | 119.5° |
CA | C | O | OXT | 179.6° | 179.9° |
CA | C | OXT | HOXT | 179.6° | 179.9° |
C | CA | CB1 | CD | 104.1° | 88.3° |
C | CA | CB1 | HB11 | 135.9° | 32.1° |
C | CA | CB1 | HB12 | 18.0° | 151.9° |
C | CA | CB2 | CG2 | 126.8° | 79.4° |
C | CA | CB2 | HB21 | 6.8° | 163.4° |
C | CA | CB2 | HB22 | 111.6° | 41.4° |
CB1 | CA | C | O | 102.2° | 5.1° |
CB1 | CA | C | OXT | 77.4° | 174.8° |
CA | CB1 | CD | HB11 | 120.0° | 121.4° |
CA | CB1 | CD | HB12 | 122.0° | 120.0° |
CA | CB1 | HB11 | HB12 | 122.2° | 122.0° |
CB1 | CA | CB2 | CG2 | 4.0° | 40.1° |
CB1 | CA | CB2 | HB21 | 116.0° | 77.1° |
CB1 | CA | CB2 | HB22 | 125.6° | 160.9° |
CA | CB1 | CD | CG2 | 33.6° | 10.5° |
CA | CB1 | CD | CE | 154.0° | 130.8° |
CA | CB1 | CD | HD | 87.8° | 110.3° |
CB2 | CA | C | O | 136.9° | 120.0° |
CB2 | CA | C | OXT | 43.6° | 59.9° |
CB2 | CA | CB1 | CD | 18.2° | 31.2° |
CB2 | CA | CB1 | HB11 | 101.8° | 151.7° |
CB2 | CA | CB1 | HB12 | 140.2° | 88.6° |
CA | CB2 | CG2 | HB21 | 120.0° | 118.4° |
CA | CB2 | CG2 | HB22 | 121.6° | 122.2° |
CA | CB2 | HB21 | HB22 | 121.8° | 125.1° |
CA | CB2 | CG2 | CD | 24.6° | 33.6° |
CA | CB2 | CG2 | HG21 | 144.6° | 84.0° |
CA | CB2 | CG2 | HG22 | 97.4° | 157.2° |
O | C | OXT | HOXT | 0.0° | 0.0° |
CD | CB1 | HB11 | HB12 | 122.3° | 120.8° |
CB1 | CD | CG2 | CB2 | 36.4° | 14.3° |
CB1 | CD | CG2 | CE | 119.7° | 120.0° |
CB1 | CD | CG2 | HD | 122.0° | 121.3° |
CB1 | CD | CG2 | HG21 | 156.5° | 103.4° |
CB1 | CD | CG2 | HG22 | 85.5° | 136.4° |
CB1 | CD | CE | HD | 122.1° | 121.4° |
CB1 | CD | CE | OZ1 | 135.7° | 88.6° |
CB1 | CD | CE | OZ2 | 44.1° | 91.5° |
HB11 | CB1 | CD | CG2 | 86.4° | 131.9° |
HB11 | CB1 | CD | CE | 34.0° | 107.8° |
HB11 | CB1 | CD | HD | 152.2° | 11.1° |
HB12 | CB1 | CD | CG2 | 155.7° | 109.5° |
HB12 | CB1 | CD | CE | 84.0° | 10.8° |
HB12 | CB1 | CD | HD | 34.3° | 129.6° |
CG2 | CB2 | HB21 | HB22 | 121.7° | 121.4° |
CB2 | CG2 | CD | HG21 | 120.0° | 117.7° |
CB2 | CG2 | CD | HG22 | 122.0° | 122.2° |
CB2 | CG2 | HG21 | HG22 | 122.1° | 121.2° |
CB2 | CG2 | CD | CE | 156.1° | 105.7° |
CB2 | CG2 | CD | HD | 85.6° | 135.5° |
HB21 | CB2 | CG2 | CD | 95.4° | 84.8° |
HB21 | CB2 | CG2 | HG21 | 24.6° | 157.6° |
HB21 | CB2 | CG2 | HG22 | 142.6° | 38.8° |
HB22 | CB2 | CG2 | CD | 146.2° | 155.8° |
HB22 | CB2 | CG2 | HG21 | 93.8° | 38.2° |
HB22 | CB2 | CG2 | HG22 | 24.3° | 80.6° |
CD | CG2 | HG21 | HG22 | 122.1° | 123.8° |
CG2 | CD | CE | HD | 121.5° | 120.8° |
CG2 | CD | CE | OZ1 | 108.0° | 29.2° |
CG2 | CD | CE | OZ2 | 72.3° | 150.7° |
HG21 | CG2 | CD | CE | 83.9° | 136.6° |
HG21 | CG2 | CD | HD | 34.4° | 17.8° |
HG22 | CG2 | CD | CE | 34.2° | 16.4° |
HG22 | CG2 | CD | HD | 152.5° | 102.3° |
CD | CE | OZ1 | OZ2 | 179.7° | 179.8° |
CD | CE | OZ2 | HOZ2 | 179.7° | 179.8° |
HD | CD | CE | OZ1 | 13.5° | 150.0° |
HD | CD | CE | OZ2 | 166.2° | 29.9° |
OZ1 | CE | OZ2 | HOZ2 | 0.0° | 0.0° |