Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

BER

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C1C2sing1.49Å1.51ÅAromatic
C1N1doub1.34Å1.46ÅAromatic
C1C3sing1.38Å1.45ÅAromatic
C2C4doub1.39Å1.51ÅAromatic
C2C5sing1.40Å1.45ÅAromatic
N1C6sing1.32Å1.45ÅAromatic
N1C7sing1.47Å1.55Å
C3C8doub1.40Å1.43ÅAromatic
C3H31sing1.08Å1.10Å
C4C9sing1.39Å1.45ÅAromatic
C4C10sing1.51Å1.55Å
C5C11doub1.39Å1.43ÅAromatic
C5H51sing1.08Å1.10Å
C6C12doub1.40Å1.45ÅAromatic
C6H61sing1.08Å1.10Å
C7C10sing1.52Å1.58Å
C7H71sing1.09Å1.11Å
C7H72sing1.09Å1.11Å
C8C12sing1.42Å1.47ÅAromatic
C8C13sing1.40Å1.41ÅAromatic
C9C14doub1.39Å1.47ÅAromatic
C9H91sing1.08Å1.10Å
C10H101sing1.09Å1.12Å
C10H102sing1.09Å1.12Å
C11C14sing1.41Å1.47ÅAromatic
C11O1sing1.35Å1.38Å
C12C15sing1.41Å1.48ÅAromatic
C13C16doub1.36Å1.44ÅAromatic
C13H131sing1.08Å1.10Å
C14O2sing1.35Å1.40Å
O1C17sing1.44Å1.47Å
C15C18doub1.38Å1.48ÅAromatic
C15O3sing1.36Å1.43Å
C16C18sing1.40Å1.45ÅAromatic
C16H161sing1.08Å1.10Å
O2C17sing1.44Å1.45Å
C17H171sing1.09Å1.12Å
C17H172sing1.09Å1.12Å
C18O4sing1.36Å1.44Å
O3C19sing1.43Å1.47Å
O4C20sing1.43Å1.47Å
C19H191sing1.09Å1.12Å
C19H192sing1.09Å1.11Å
C19H193sing1.09Å1.12Å
C20H201sing1.09Å1.11Å
C20H202sing1.09Å1.11Å
C20H203sing1.09Å1.12Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C2C1N1119.3°119.6°
C2C1C3120.5°118.8°
C1C2C4119.9°118.8°
C1C2C5119.8°119.8°
N1C1C3120.2°121.6°
C1N1C6119.3°121.7°
C1N1C7121.3°120.5°
C1C3C8119.9°119.0°
C1C3H31120.8°120.5°
C4C2C5120.3°121.4°
C2C4C9118.8°121.5°
C2C4C10121.5°118.7°
C2C5C11120.0°117.2°
C2C5H51120.8°121.4°
C6N1C7119.3°117.8°
N1C6C12120.9°121.0°
N1C6H61119.4°119.5°
N1C7C10116.6°111.2°
N1C7H71109.7°109.2°
N1C7H72109.7°109.2°
C8C3H31119.3°120.5°
C3C8C12121.1°118.0°
C3C8C13118.6°122.2°
C9C4C10119.7°119.8°
C4C9C14119.9°117.4°
C4C9H91119.4°121.3°
C4C10C7113.0°109.7°
C4C10H101110.9°109.4°
C4C10H102110.9°109.4°
C11C5H51119.3°121.4°
C5C11C14120.7°121.2°
C5C11O1130.9°130.0°
C12C6H61119.7°119.5°
C6C12C8118.5°118.8°
C6C12C15121.0°122.0°
C10C7H71109.6°109.2°
C10C7H72109.6°109.1°
C7C10H101111.0°109.5°
C7C10H102111.0°109.4°
H71C7H72100.5°109.0°
C12C8C13120.2°119.8°
C8C12C15120.4°119.2°
C8C13C16120.2°119.8°
C8C13H131118.8°120.1°
C14C9H91120.6°121.3°
C9C14C11120.2°121.4°
C9C14O2131.5°129.9°
H101C10H10299.3°109.4°
C14C11O1108.4°108.8°
C11C14O2108.3°108.7°
C11O1C17106.3°105.6°
C12C15C18118.4°119.3°
C12C15O3118.6°120.3°
C16C13H131120.9°120.1°
C13C16C18122.6°121.0°
C13C16H161118.0°119.5°
C14O2C17105.6°105.5°
O1C17O2106.6°104.1°
O1C17H171113.3°110.5°
O1C17H172113.3°110.5°
C18C15O3122.9°120.4°
C15C18C16118.1°120.8°
C15C18O4121.6°119.6°
C15O3C19124.3°106.8°
C18C16H161119.4°119.5°
C16C18O4120.3°119.6°
O2C17H171113.3°110.5°
O2C17H172113.2°110.5°
H171C17H17297.1°110.6°
C18O4C20123.0°106.8°
O3C19H191124.3°109.5°
O3C19H192106.9°109.5°
O3C19H193106.9°109.5°
O4C20H201123.0°109.4°
O4C20H202107.4°109.5°
O4C20H203107.4°109.4°
H191C19H192107.0°109.4°
H191C19H193107.0°109.5°
H192C19H193102.8°109.5°
H201C20H202107.5°109.5°
H201C20H203107.5°109.4°
H202C20H203102.3°109.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C2C1N1C3179.2°178.9°
C1C2C4C5178.2°178.4°
C2C1N1C6177.7°177.8°
C2C1N1C71.5°2.7°
C2C1C3C8178.2°178.7°
C2C1C3H311.8°1.4°
C1C2C4C9178.9°179.3°
C1C2C4C101.0°1.5°
C1C2C5C11178.7°179.6°
C1C2C5H511.2°0.5°
N1C1C2C411.9°17.1°
N1C1C2C5169.9°164.5°
C1N1C6C7179.2°179.6°
N1C1C3C81.0°2.4°
N1C1C3H31179.0°177.5°
C1N1C6C120.7°1.7°
C1N1C6H61179.3°178.3°
C1N1C7C1025.0°37.9°
C1N1C7H71100.2°158.4°
C1N1C7H72150.2°82.5°
C3C1C2C4167.3°164.0°
C3C1C2C510.9°14.5°
C3C1N1C61.5°3.3°
C3C1N1C7179.3°176.3°
C1C3C8H31180.0°179.9°
C1C3C8C120.4°0.0°
C1C3C8C13179.9°179.7°
C2C4C9C10179.9°179.2°
C4C2C5C110.5°2.0°
C4C2C5H51179.4°177.9°
C2C4C10C721.4°35.5°
C2C4C9C140.5°1.1°
C2C4C9H91179.5°179.0°
C2C4C10H101103.9°84.6°
C2C4C10H102146.7°155.6°
C5C2C4C90.7°2.3°
C5C2C4C10179.2°176.9°
C2C5C11H51180.0°179.9°
C2C5C11C140.1°0.6°
C2C5C11O1179.8°179.6°
N1C6C12H61180.0°179.9°
C6N1C7C10154.2°142.5°
C6N1C7H7180.6°22.0°
C6N1C7H7229.0°97.1°
N1C6C12C80.7°0.7°
N1C6C12C15179.4°179.7°
N1C7C10C433.4°52.3°
C7N1C6C12179.9°177.9°
C7N1C6H610.1°2.2°
N1C7C10H71125.3°120.5°
N1C7C10H72125.3°120.5°
N1C7H71H72115.5°119.2°
N1C7C10H10191.9°67.8°
N1C7C10H102158.7°172.3°
C3C8C12C61.2°1.5°
C3C8C12C13179.5°179.7°
C3C8C12C15178.9°179.0°
C3C8C13C16179.3°179.0°
C3C8C13H1310.7°1.0°
H31C3C8C12179.7°179.9°
H31C3C8C130.1°0.3°
C9C4C10C7158.7°145.3°
C4C9C14H91180.0°180.0°
C9C4C10H10176.0°94.6°
C9C4C10H10233.4°25.2°
C4C9C14C110.1°0.4°
C4C9C14O2179.9°179.9°
C4C10C7H101125.3°120.1°
C4C10C7H102125.3°120.0°
C4C10C7H7191.9°172.7°
C4C10C7H72158.7°68.2°
C10C4C9C14179.4°178.2°
C10C4C9H910.6°1.8°
C4C10H101H102116.8°119.9°
C5C11C14C90.1°0.6°
C5C11C14O1179.7°179.9°
C5C11C14O2179.9°179.6°
C5C11O1C17166.9°163.7°
H51C5C11C14179.9°179.4°
H51C5C11O10.2°0.5°
C6C12C8C15179.9°179.5°
C6C12C8C13179.3°178.8°
C6C12C15C18179.6°179.3°
C6C12C15O30.7°1.0°
H61C6C12C8179.4°179.3°
H61C6C12C150.6°0.2°
C10C7H71H72115.3°119.1°
C7C10H101H102116.8°119.9°
H71C7C10H101142.9°52.6°
H71C7C10H10233.4°67.2°
H72C7C10H10133.4°171.7°
H72C7C10H10276.0°51.8°
C12C8C13C160.2°0.7°
C12C8C13H131179.8°179.3°
C8C12C15C180.3°0.2°
C8C12C15O3179.4°179.5°
C13C8C12C150.6°0.8°
C8C13C16H131180.0°180.0°
C8C13C16C180.5°0.0°
C8C13C16H161179.5°180.0°
C9C14C11O2180.0°179.7°
C9C14C11O1179.6°179.2°
C9C14O2C17166.4°162.8°
H91C9C14C11180.0°179.6°
H91C9C14O20.0°0.1°
C14C11O1C1712.8°16.2°
C11C14O2C1713.6°16.9°
O1C11C14O20.4°0.5°
C11O1C17O221.3°25.9°
C11O1C17H171104.0°92.8°
C11O1C17H172146.6°144.5°
C12C15C18O3179.7°179.7°
C12C15C18C160.3°0.4°
C12C15C18O4179.8°179.9°
C12C15O3C19179.9°90.0°
C13C16C18C150.8°0.5°
C13C16C18H161180.0°180.0°
C13C16C18O4179.7°179.8°
H131C13C16C18179.5°179.9°
H131C13C16H1610.5°0.0°
C14O2C17O121.3°26.1°
C14O2C17H171104.0°92.4°
C14O2C17H172146.7°144.8°
O1C17O2H171125.3°118.6°
O1C17O2H172125.3°118.7°
O1C17H171H172119.2°122.7°
C15C18C16O4179.5°179.7°
C15C18C16H161179.2°179.5°
C18C15O3C190.2°90.2°
C15C18O4C20179.7°179.7°
O3C15C18C16180.0°179.8°
O3C15C18O40.5°0.1°
C15O3C19H191180.0°180.0°
C15O3C19H19254.8°60.0°
C15O3C19H19354.7°60.0°
C16C18O4C200.2°0.0°
H161C16C18O40.3°0.2°
O2C17H171H172119.1°122.7°
C18O4C20H201180.0°180.0°
C18O4C20H20254.7°60.0°
C18O4C20H20354.7°60.1°
O3C19H191H192125.2°120.0°
O3C19H191H193125.2°120.0°
O3C19H192H193112.4°120.0°
O4C20H201H202125.3°120.0°
O4C20H201H203125.2°119.9°
O4C20H202H203112.9°120.0°
H191C19H192H193112.5°120.0°
H201C20H202H203113.0°120.0°

222624

PDB entries from 2024-07-17

PDB statisticsPDBj update infoContact PDBjnumon