Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

B8L

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O1C1sing1.36Å1.45Å
O1HO1sing0.97Å0.95Å
C1C2doub1.39Å1.40ÅAromatic
C1C6sing1.39Å1.40ÅAromatic
C2C3sing1.38Å1.40ÅAromatic
C2H2sing1.08Å1.10Å
C3C4doub1.40Å1.41ÅAromatic
C3H3sing1.08Å1.10Å
C4C5sing1.40Å1.41ÅAromatic
C4C7sing1.47Å1.41Å
C5C6doub1.38Å1.41ÅAromatic
C5H5sing1.08Å1.10Å
C6C66sing1.51Å1.49Å
C7O7doub1.21Å1.24Å
C7N8sing1.35Å1.34Å
N8C8sing1.46Å1.46Å
N8HN8sing0.97Å1.02Å
C8C9sing1.51Å1.56Å
C8C14sing1.54Å1.52Å
C8H8sing1.09Å1.11Å
C9C10sing1.54Å1.54Å
C9O9sing1.45Å1.44Å
C9H9sing1.09Å1.12Å
C10C11sing1.54Å1.52Å
C10H101sing1.09Å1.12Å
C10H102sing1.09Å1.12Å
C11C12sing1.51Å1.53Å
C11H111sing1.09Å1.11Å
C11H112sing1.09Å1.12Å
C12N13sing1.48Å1.46Å
C12H121sing1.09Å1.11Å
C12H122sing1.09Å1.12Å
N13C14sing1.39Å1.46Å
N13H13sing1.01Å1.02Å
O9C15sing1.35Å1.46Å
C14H141sing1.09Å1.12Å
C14H142sing1.09Å1.11Å
C15O15doub1.21Å1.23Å
C15C16sing1.48Å1.39Å
C16C17sing1.40Å1.41ÅAromatic
C16C21doub1.40Å1.39ÅAromatic
C17C18doub1.38Å1.40ÅAromatic
C17H17sing1.08Å1.10Å
C18C19sing1.40Å1.40ÅAromatic
C18H18sing1.08Å1.10Å
C19C20doub1.39Å1.40ÅAromatic
C19C22sing1.48Å1.41Å
C20C21sing1.38Å1.40ÅAromatic
C20H20sing1.08Å1.10Å
C21H21sing1.08Å1.10Å
C22O22doub1.22Å1.24Å
C22C23sing1.47Å1.40Å
C23C24sing1.40Å1.39ÅAromatic
C23C29doub1.40Å1.41ÅAromatic
C24C26doub1.38Å1.40ÅAromatic
C24H24sing1.08Å1.10Å
C26O26sing1.36Å1.46Å
C26C27sing1.39Å1.39ÅAromatic
O26C30sing1.43Å1.41Å
C27C28doub1.38Å1.39ÅAromatic
C27H27sing1.08Å1.10Å
C28C29sing1.39Å1.40ÅAromatic
C28H28sing1.08Å1.10Å
C29O29sing1.36Å1.44Å
O29H29sing0.97Å0.95Å
C66C71sing1.53Å1.54Å
C66C72sing1.53Å1.52Å
C66H66sing1.09Å1.11Å
C71C81sing1.53Å1.55Å
C71H711sing1.09Å1.12Å
C71H712sing1.09Å1.12Å
C72H721sing1.09Å1.12Å
C72H722sing1.09Å1.11Å
C72H723sing1.09Å1.12Å
C81H811sing1.09Å1.12Å
C81H812sing1.09Å1.11Å
C81H813sing1.09Å1.11Å
C30H301sing1.09Å1.11Å
C30H302sing1.09Å1.12Å
C30H303sing1.09Å1.11Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C1O1HO1119.8°106.8°
O1C1C2119.8°119.9°
O1C1C6119.7°119.9°
C2C1C6120.5°120.2°
C1C2C3119.8°120.1°
C1C2H2120.0°119.9°
C1C6C5119.0°120.1°
C1C6C66119.6°120.0°
C3C2H2120.3°120.0°
C2C3C4121.6°119.9°
C2C3H3118.9°120.1°
C4C3H3119.5°120.0°
C3C4C5117.2°119.8°
C3C4C7120.2°120.1°
C5C4C7121.9°120.1°
C4C5C6121.9°119.9°
C4C5H5119.3°120.0°
C4C7O7123.2°120.0°
C4C7N8114.5°120.0°
C6C5H5118.9°120.0°
C5C6C66121.4°120.0°
C6C66C71112.2°109.5°
C6C66C72110.7°109.5°
C6C66H66107.7°109.5°
O7C7N8122.1°119.9°
C7N8C8123.5°120.1°
C7N8HN8113.8°120.0°
C8N8HN8122.6°120.0°
N8C8C9112.2°109.5°
N8C8C14105.9°109.6°
N8C8H8113.1°109.5°
C9C8C14116.8°109.1°
C9C8H8101.0°109.6°
C8C9C10118.0°112.1°
C8C9O9104.0°109.0°
C8C9H9108.1°108.9°
C14C8H8108.0°109.5°
C8C14N13109.7°112.5°
C8C14H141112.1°108.9°
C8C14H142112.1°108.9°
C10C9O9110.8°108.9°
C10C9H9100.9°109.0°
C9C10C11112.9°111.5°
C9C10H101111.0°109.1°
C9C10H102111.0°109.0°
O9C9H9115.7°109.0°
C9O9C15114.7°120.0°
C11C10H101111.0°109.1°
C11C10H102110.9°109.0°
C10C11C12111.1°111.1°
C10C11H111111.6°109.1°
C10C11H112111.6°109.2°
H101C10H10299.3°109.1°
C12C11H111111.6°109.2°
C12C11H112111.6°109.2°
C11C12N13112.5°108.7°
C11C12H121111.1°109.6°
C11C12H122111.1°109.6°
H111C11H11298.8°109.1°
N13C12H121111.1°109.6°
N13C12H122111.1°109.6°
C12N13C14124.8°110.8°
C12N13H13106.8°106.7°
H121C12H12299.2°109.7°
C14N13H13106.8°106.7°
N13C14H141112.1°108.9°
N13C14H142112.2°108.9°
O9C15O15120.4°120.0°
O9C15C16120.6°120.0°
H141C14H14298.3°108.8°
O15C15C16117.9°120.0°
C15C16C17121.3°120.0°
C15C16C21120.5°120.0°
C17C16C21118.2°120.0°
C16C17C18121.0°120.0°
C16C17H17119.7°120.0°
C16C21C20120.8°120.0°
C16C21H21119.4°120.0°
C18C17H17119.3°120.0°
C17C18C19120.5°120.0°
C17C18H18119.9°120.0°
C19C18H18119.6°120.0°
C18C19C20118.5°120.0°
C18C19C22120.4°120.0°
C20C19C22121.1°120.0°
C19C20C21120.9°120.0°
C19C20H20119.4°120.0°
C19C22O22118.2°120.0°
C19C22C23123.2°120.0°
C21C20H20119.7°120.0°
C20C21H21119.8°120.0°
O22C22C23118.6°120.0°
C22C23C24116.2°120.2°
C22C23C29126.3°120.2°
C24C23C29116.8°119.6°
C23C24C26121.8°119.8°
C23C24H24118.7°120.1°
C23C29C28121.7°119.8°
C23C29O29119.0°120.1°
C26C24H24119.5°120.1°
C24C26O26120.3°119.9°
C24C26C27120.5°120.2°
O26C26C27119.2°119.9°
C26O26C30123.1°106.8°
C26C27C28118.9°120.4°
C26C27H27120.6°119.8°
O26C30H301123.2°109.4°
O26C30H302107.4°109.5°
O26C30H303107.4°109.4°
C28C27H27120.6°119.8°
C27C28C29120.3°120.1°
C27C28H28119.3°120.0°
C29C28H28120.3°119.9°
C28C29O29119.3°120.1°
C29O29H29119.0°106.8°
C71C66C72112.0°109.5°
C71C66H66106.1°109.5°
C66C71C81111.7°109.5°
C66C71H711111.4°109.5°
C66C71H712111.4°109.5°
C72C66H66107.9°109.5°
C66C72H721110.7°109.5°
C66C72H722111.8°109.5°
C66C72H723111.8°109.5°
C81C71H711111.4°109.5°
C81C71H712111.4°109.5°
C71C81H811111.7°109.5°
C71C81H812111.4°109.5°
C71C81H813111.4°109.5°
H711C71H71298.9°109.4°
H721C72H722111.8°109.5°
H721C72H723111.7°109.4°
H722C72H72398.7°109.5°
H811C81H812111.3°109.4°
H811C81H813111.3°109.4°
H812C81H81399.1°109.5°
H301C30H302107.3°109.5°
H301C30H303107.4°109.5°
H302C30H303102.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O1C1C2C6179.1°179.4°
O1C1C2C3178.0°180.0°
O1C1C2H22.0°0.2°
O1C1C6C5178.4°180.0°
O1C1C6C661.7°0.3°
HO1O1C1C2180.0°90.0°
HO1O1C1C60.9°90.5°
C1C2C3H2180.0°179.8°
C1C2C3C40.9°0.3°
C1C2C3H3179.0°179.7°
C2C1C6C50.7°0.6°
C2C1C6C66179.3°179.7°
C6C1C2C31.0°0.5°
C6C1C2H2179.0°179.7°
C1C6C5C40.2°0.3°
C1C6C5C66179.9°179.7°
C1C6C5H5179.8°179.7°
C1C6C66C71122.1°120.3°
C1C6C66C72112.0°119.7°
C1C6C66H665.6°0.3°
C2C3C4H3180.0°180.0°
C2C3C4C50.4°0.0°
C2C3C4C7169.8°180.0°
H2C2C3C4179.1°180.0°
H2C2C3H31.0°0.0°
C3C4C5C7170.1°180.0°
C3C4C5C60.1°0.0°
C3C4C5H5179.9°180.0°
C3C4C7O75.7°180.0°
C3C4C7N8179.3°0.1°
H3C3C4C5179.5°180.0°
H3C3C4C710.2°0.0°
C4C5C6H5180.0°180.0°
C4C5C6C66179.7°180.0°
C5C4C7O7175.5°0.0°
C5C4C7N89.5°180.0°
C7C4C5C6170.0°180.0°
C7C4C5H510.0°0.0°
C4C7O7N8174.6°179.9°
C4C7N8C8168.1°180.0°
C4C7N8HN812.0°0.1°
C5C6C66C7158.0°60.0°
C5C6C66C7267.9°60.0°
C5C6C66H66174.4°180.0°
H5C5C6C660.3°0.0°
C6C66C71C72125.2°120.0°
C6C66C71H66117.3°120.0°
C6C66C72H66117.5°120.0°
C6C66C71C8176.4°180.0°
C6C66C71H711158.3°60.0°
C6C66C71H71248.9°59.9°
C6C66C72H721179.9°60.0°
C6C66C72H72254.7°180.0°
C6C66C72H72354.8°60.0°
O7C7N8C816.9°0.1°
O7C7N8HN8163.1°180.0°
C7N8C8HN8180.0°179.9°
C7N8C8C9119.9°150.2°
C7N8C8C14111.6°90.1°
C7N8C8H86.4°30.1°
N8C8C9C14122.5°119.9°
N8C8C9H8120.7°120.1°
N8C8C14H8121.3°120.1°
N8C8C9C10150.5°147.1°
N8C8C9O986.4°26.4°
N8C8C9H937.0°92.3°
N8C8C14N13158.1°159.8°
N8C8C14H14176.6°79.5°
N8C8C14H14232.8°38.9°
HN8N8C8C960.1°29.8°
HN8N8C8C1468.5°89.9°
HN8N8C8H8173.5°150.0°
C9C8C14H8112.9°119.9°
C8C9C10O9119.6°120.7°
C8C9C10H9117.4°120.5°
C8C9O9H9118.3°118.7°
C8C9C10C1148.5°40.7°
C8C9C10H101173.8°161.2°
C8C9C10H10276.7°79.7°
C9C8C14N1376.2°80.3°
C8C9O9C15166.6°147.5°
C9C8C14H14149.1°40.4°
C9C8C14H142158.6°158.9°
C14C8C9C1028.0°93.0°
C14C8C9O9151.1°146.4°
C14C8C9H985.5°27.6°
C8C14N13C1275.4°63.8°
C8C14N13H141125.2°120.7°
C8C14N13H142125.3°120.8°
C8C14N13H13159.4°179.6°
C8C14H141H142118.1°118.5°
H8C8C9C1088.8°26.9°
H8C8C9O934.3°93.7°
H8C8C9H9157.7°147.5°
H8C8C14N1336.8°39.6°
H8C8C14H141162.0°160.4°
H8C8C14H14288.5°81.2°
C10C9O9H9113.9°118.8°
C9C10C11H101125.3°120.6°
C9C10C11H102125.3°120.4°
C9C10H101H102116.9°119.0°
C9C10C11C1288.7°40.5°
C9C10C11H11136.6°160.9°
C9C10C11H112146.0°80.0°
C10C9O9C1565.7°90.0°
O9C9C10C1171.1°161.4°
O9C9C10H10154.2°78.1°
O9C9C10H102163.6°41.0°
C9O9C15O1522.1°0.0°
C9O9C15C16145.5°179.9°
H9C9C10C11165.9°79.8°
H9C9C10H10168.8°40.7°
H9C9C10H10240.7°159.8°
H9C9O9C1548.2°28.8°
C11C10H101H102116.8°119.0°
C10C11C12H111125.3°120.4°
C10C11C12H112125.3°120.5°
C10C11H111H112117.5°119.2°
C10C11C12N1369.4°97.6°
C10C11C12H121165.4°22.2°
C10C11C12H12255.9°142.7°
H101C10C11C12146.0°80.1°
H101C10C11H11188.7°40.3°
H101C10C11H11220.7°159.4°
H102C10C11C1236.6°160.8°
H102C10C11H111161.9°78.7°
H102C10C11H11288.7°40.4°
C12C11H111H112117.5°119.2°
C11C12N13H121125.3°119.8°
C11C12N13H122125.3°119.7°
C11C12H121H122117.0°120.4°
C11C12N13C1459.9°84.8°
C11C12N13H13174.9°159.5°
H111C11C12N1355.9°142.0°
H111C11C12H12169.3°98.2°
H111C11C12H122178.8°22.3°
H112C11C12N13165.4°22.9°
H112C11C12H12140.1°142.7°
H112C11C12H12269.3°96.9°
N13C12H121H122117.0°120.4°
C12N13C14H13125.2°115.7°
C12N13C14H14149.9°56.9°
C12N13C14H142159.4°175.4°
H121C12N13C14174.9°35.0°
H121C12N13H1349.7°80.8°
H122C12N13C1465.4°155.5°
H122C12N13H1359.8°39.7°
N13C14H141H142118.1°118.6°
H13N13C14H14175.3°58.8°
H13N13C14H14234.1°59.6°
O9C15O15C16167.9°180.0°
O9C15C16C17152.7°0.3°
O9C15C16C2125.8°180.0°
O15C15C16C1739.4°179.7°
O15C15C16C21142.1°0.1°
C15C16C17C21178.5°179.6°
C15C16C17C18179.6°179.8°
C15C16C17H170.5°0.3°
C15C16C21C20179.6°180.0°
C15C16C21H210.4°0.1°
C16C17C18H17180.0°179.5°
C16C17C18C190.8°0.5°
C16C17C18H18179.2°179.8°
C17C16C21C201.1°0.3°
C17C16C21H21179.0°179.7°
C21C16C17C181.0°0.6°
C21C16C17H17179.0°179.9°
C16C21C20C190.9°0.1°
C16C21C20H21180.0°179.9°
C16C21C20H20179.1°179.9°
C17C18C19H18180.0°179.7°
C17C18C19C200.6°0.3°
C17C18C19C22177.6°179.8°
H17C17C18C19179.2°179.9°
H17C17C18H180.8°0.3°
C18C19C20C22177.1°179.9°
C18C19C20C210.6°0.0°
C18C19C20H20179.3°179.9°
C18C19C22O2242.7°6.6°
C18C19C22C23140.1°173.5°
H18C18C19C20179.4°180.0°
H18C18C19C222.3°0.1°
C19C20C21H20180.0°180.0°
C19C20C21H21179.1°180.0°
C20C19C22O22134.3°173.5°
C20C19C22C2342.9°6.5°
C22C19C20C21177.7°180.0°
C22C19C20H202.3°0.0°
C19C22O22C23177.3°179.9°
C19C22C23C24128.5°123.2°
C19C22C23C2961.7°57.1°
H20C20C21H210.9°0.0°
O22C22C23C2448.7°56.7°
O22C22C23C29121.1°123.0°
C22C23C24C29170.8°179.7°
C22C23C24C26172.5°180.0°
C22C23C24H247.5°0.1°
C22C23C29C28172.2°179.8°
C22C23C29O297.3°0.3°
C23C24C26H24180.0°180.0°
C23C24C26O26179.3°180.0°
C23C24C26C271.0°0.0°
C24C23C29C282.5°0.5°
C24C23C29O29177.1°180.0°
C29C23C24C261.6°0.3°
C29C23C24H24178.4°179.8°
C23C29C28C272.7°0.6°
C23C29C28O29179.6°179.5°
C23C29C28H28177.4°179.8°
C23C29O29H29180.0°90.4°
C24C26O26C27178.3°180.0°
C24C26O26C3024.4°180.0°
C24C26C27C281.1°0.0°
C24C26C27H27178.9°180.0°
H24C24C26O260.7°0.0°
H24C24C26C27179.0°180.0°
O26C26C27C28179.4°179.9°
O26C26C27H270.6°0.0°
C26O26C30H301180.0°180.0°
C26O26C30H30254.8°60.0°
C26O26C30H30354.7°60.0°
C27C26O26C30157.3°0.0°
C26C27C28H27180.0°179.9°
C26C27C28C291.9°0.3°
C26C27C28H28178.1°180.0°
O26C30H301H302125.2°120.0°
O26C30H301H303125.3°119.9°
O26C30H302H303112.9°120.0°
C27C28C29H28180.0°179.7°
C27C28C29O29176.9°180.0°
H27C27C28C29178.1°179.7°
H27C27C28H281.9°0.1°
C28C29O29H290.4°90.1°
H28C28C29O293.1°0.3°
C71C66C72H66116.5°120.0°
C66C71C81H711125.3°120.0°
C66C71C81H712125.3°120.0°
C66C71H711H712117.3°120.0°
C71C66C72H72153.9°60.1°
C71C66C72H722179.3°60.0°
C71C66C72H72371.2°180.0°
C66C71C81H811180.0°180.0°
C66C71C81H81254.8°60.0°
C66C71C81H81354.8°60.0°
C72C66C71C81158.5°60.0°
C72C66C71H71133.2°180.0°
C72C66C71H71276.3°60.1°
C66C72H721H722125.3°120.0°
C66C72H721H723125.2°120.0°
C66C72H722H723117.7°120.0°
H66C66C71C8141.0°60.0°
H66C66C71H71184.3°60.0°
H66C66C71H712166.2°180.0°
H66C66C72H72162.5°179.9°
H66C66C72H72262.8°60.0°
H66C66C72H723172.3°60.0°
C81C71H711H712117.3°120.0°
C71C81H811H812125.3°120.0°
C71C81H811H813125.2°120.0°
C71C81H812H813117.3°120.0°
H711C71C81H81154.7°60.0°
H711C71C81H812179.9°60.0°
H711C71C81H81370.5°180.0°
H712C71C81H81154.7°59.9°
H712C71C81H81270.5°179.9°
H712C71C81H813179.9°60.0°
H721C72H722H723117.6°120.0°
H811C81H812H813117.2°120.0°
H301C30H302H303112.9°120.1°

223532

PDB entries from 2024-08-07

PDB statisticsPDBj update infoContact PDBjnumon