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AVU

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C6N1doub1.33Å1.37ÅAromatic
N1C2sing1.32Å1.34ÅAromatic
N3C2doub1.32Å1.35ÅAromatic
C2H2sing1.08Å1.08Å
C4N3sing1.33Å1.37ÅAromatic
N9C4sing1.37Å1.31ÅAromatic
C5C4doub1.40Å1.39ÅAromatic
N7C5sing1.35Å1.37ÅAromatic
C5C6sing1.41Å1.39ÅAromatic
N6C6sing1.38Å1.36Å
N6HN6sing0.97Å1.00Å
N6HN6Asing0.97Å1.00Å
C8N7doub1.30Å1.34ÅAromatic
C8N9sing1.36Å1.36ÅAromatic
C8H8sing1.08Å1.08Å
N9C1'sing1.46Å1.48Å
O3APAsing1.61Å1.63Å
O1APAdoub1.48Å1.49Å
O5'PAsing1.61Å1.55Å
PAO2Asing1.61Å1.50Å
O5RPBsing1.61Å1.60Å
O3APBsing1.61Å1.61Å
O1BPBdoub1.48Å1.50Å
PBO2Bsing1.61Å1.49Å
C2'C1'sing1.54Å1.52Å
C1'O4'sing1.44Å1.43Å
C1'H1'sing1.09Å1.10Å
C1RC2Rsing1.54Å1.54Å
C1RO4Rsing1.44Å1.43Å
C1RH1Rsing1.09Å1.10Å
C1RH1RAsing1.09Å1.10Å
O2'C2'sing1.43Å1.44Å
C2'C3'sing1.54Å1.49Å
C2'H2'sing1.09Å1.10Å
O2'HO2'sing0.97Å0.95Å
O2AHO2Asing0.97Å0.95Å
O2BHO2Bsing0.97Å0.95Å
C2RF2Rsing1.40Å1.39Å
C2RC3Rsing1.55Å1.51Å
C2RH2Rsing1.09Å1.10Å
O3'C3'sing1.43Å1.43Å
C3'C4'sing1.55Å1.54Å
C3'H3'sing1.09Å1.10Å
O3'HO3'sing0.97Å0.95Å
O3RC3Rsing1.43Å1.43Å
C3RC4Rsing1.55Å1.51Å
C3RH3Rsing1.09Å1.10Å
O3RHO3Rsing0.97Å0.95Å
C4'O4'sing1.44Å1.42Å
C4'C5'sing1.53Å1.51Å
C4'H4'sing1.09Å1.10Å
O4RC4Rsing1.44Å1.42Å
C4RC5Rsing1.53Å1.53Å
C4RH4Rsing1.09Å1.10Å
O5'C5'sing1.43Å1.42Å
C5'H5'sing1.09Å1.10Å
C5'H5'Asing1.09Å1.10Å
C5RO5Rsing1.43Å1.42Å
C5RH5Rsing1.09Å1.10Å
C5RH5RAsing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C6N1C2121.5°121.2°
N1C6C5118.8°118.5°
N1C6N6121.5°120.8°
N1C2N3121.3°122.5°
N1C2H2119.3°118.8°
N3C2H2119.4°118.7°
C2N3C4118.6°120.6°
N3C4N9130.5°134.9°
N3C4C5121.8°119.1°
N9C4C5107.5°106.0°
C4N9C8108.1°107.4°
C4N9C1'120.6°126.3°
C4C5N7108.4°107.1°
C4C5C6117.8°118.2°
N7C5C6133.7°134.7°
C5N7C8105.6°109.4°
C5C6N6119.7°120.7°
C6N6HN6109.5°120.0°
C6N6HN6A109.5°120.0°
HN6N6HN6A109.5°120.0°
N7C8N9110.1°110.0°
N7C8H8124.9°125.0°
N9C8H8125.0°125.0°
C8N9C1'131.0°126.3°
N9C1'C2'113.9°110.4°
N9C1'O4'107.6°110.3°
N9C1'H1'107.5°110.3°
O3APAO1A108.2°109.4°
O3APAO5'102.2°109.5°
O3APAO2A110.4°109.4°
PAO3APB129.7°134.0°
O1APAO5'107.4°109.5°
O1APAO2A117.1°109.5°
O5'PAO2A110.5°109.5°
PAO5'C5'122.4°123.0°
PAO2AHO2A109.5°114.0°
O5RPBO3A99.9°109.5°
O5RPBO1B106.3°109.4°
O5RPBO2B105.3°109.5°
PBO5RC5R118.6°123.0°
O3APBO1B108.2°109.5°
O3APBO2B112.1°109.5°
O1BPBO2B122.4°109.5°
PBO2BHO2B109.5°114.0°
C2'C1'O4'108.7°104.8°
C2'C1'H1'106.4°110.5°
C1'C2'O2'105.0°110.5°
C1'C2'C3'104.0°104.1°
C1'C2'H2'115.9°110.5°
O4'C1'H1'112.8°110.4°
C1'O4'C4'108.7°105.3°
C2RC1RO4R106.2°107.3°
C2RC1RH1R110.6°109.9°
C2RC1RH1RA110.6°109.9°
C1RC2RF2R103.8°110.5°
C1RC2RC3R102.5°104.2°
C1RC2RH2R118.1°110.5°
O4RC1RH1R110.6°109.8°
O4RC1RH1RA110.6°109.9°
C1RO4RC4R110.2°106.9°
H1RC1RH1RA108.3°110.0°
O2'C2'C3'110.3°110.5°
O2'C2'H2'110.2°110.5°
C2'O2'HO2'109.5°114.0°
C3'C2'H2'111.1°110.6°
C2'C3'O3'106.6°110.5°
C2'C3'C4'103.2°104.0°
C2'C3'H3'116.9°110.5°
F2RC2RC3R112.1°110.5°
F2RC2RH2R109.4°110.4°
C3RC2RH2R110.6°110.6°
C2RC3RO3R111.7°110.9°
C2RC3RC4R107.6°102.1°
C2RC3RH3R109.1°110.9°
O3'C3'C4'114.3°110.5°
O3'C3'H3'106.4°110.6°
C3'O3'HO3'109.5°114.0°
C4'C3'H3'109.6°110.5°
C3'C4'O4'106.6°104.8°
C3'C4'C5'117.4°110.4°
C3'C4'H4'104.6°110.4°
O3RC3RC4R109.1°110.9°
O3RC3RH3R107.6°110.9°
C3RO3RHO3R109.5°113.9°
C4RC3RH3R111.8°110.9°
C3RC4RO4R106.4°103.5°
C3RC4RC5R108.7°110.6°
C3RC4RH4R110.2°110.6°
O4'C4'C5'104.4°110.4°
O4'C4'H4'117.5°110.4°
C5'C4'H4'106.9°110.4°
C4'C5'O5'105.3°109.5°
C4'C5'H5'110.9°109.5°
C4'C5'H5'A110.9°109.5°
O4RC4RC5R103.8°110.6°
O4RC4RH4R114.7°110.8°
C5RC4RH4R112.6°110.5°
C4RC5RO5R106.5°109.5°
C4RC5RH5R110.5°109.5°
C4RC5RH5RA110.5°109.5°
O5'C5'H5'110.9°109.5°
O5'C5'H5'A110.9°109.5°
H5'C5'H5'A108.0°109.4°
O5RC5RH5R110.5°109.4°
O5RC5RH5RA110.5°109.5°
H5RC5RH5RA108.5°109.4°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C6N1C2N34.5°0.1°
C6N1C2H2175.5°180.0°
N1C6C5C43.1°0.0°
N1C6C5N7179.7°179.9°
N1C6C5N6177.5°180.0°
N1C6N6HN60.0°180.0°
N1C6N6HN6A120.0°0.0°
N1C2N3H2180.0°179.9°
N1C2N3C43.8°0.1°
C2N1C6C54.2°0.0°
C2N1C6N6178.4°180.0°
C2N3C4N9178.7°179.9°
C2N3C4C52.9°0.0°
H2C2N3C4176.2°180.0°
N3C4N9C5176.3°179.9°
N3C4C5N7180.0°179.9°
N3C4C5C62.6°0.0°
N3C4N9C8179.9°179.9°
N3C4N9C1'4.5°0.1°
N9C4C5N73.3°0.0°
N9C4C5C6179.2°179.9°
C4N9C8N72.7°0.0°
C4N9C8C1'175.0°180.0°
C4N9C8H8177.3°180.0°
C4N9C1'C2'158.0°88.2°
C4N9C1'O4'81.4°156.5°
C4N9C1'H1'40.4°34.3°
C4C5N7C6176.9°179.9°
C4C5C6N6179.4°180.0°
C4C5N7C81.6°0.0°
C5C4N9C83.6°0.0°
C5C4N9C1'179.3°180.0°
N7C5C6N62.7°0.1°
C5N7C8N90.6°0.0°
C5N7C8H8179.4°180.0°
C5C6N6HN6177.4°0.0°
C5C6N6HN6A62.5°180.0°
C6C5N7C8178.5°179.9°
C6N6HN6HN6A120.0°180.0°
N7C8N9H8180.0°180.0°
N7C8N9C1'177.7°180.0°
C8N9C1'C2'27.5°91.8°
C8N9C1'O4'93.1°23.5°
C8N9C1'H1'145.1°145.7°
H8C8N9C1'2.3°0.0°
N9C1'C2'O4'119.9°118.8°
N9C1'C2'H1'118.3°122.4°
N9C1'O4'H1'118.4°122.2°
N9C1'C2'O2'140.9°98.6°
N9C1'C2'C3'103.2°142.8°
N9C1'C2'H2'19.1°24.1°
N9C1'O4'C4'125.7°159.4°
O3APAO1AO5'109.6°120.0°
O3APAO1AO2A125.4°119.9°
O3APAO5'O2A117.5°120.0°
PAO3APBO5R179.0°165.0°
PAO3APBO1B68.1°45.0°
PAO3APBO2B69.9°75.0°
O3APAO2AHO2A124.3°60.0°
O3APAO5'C5'60.9°175.0°
O1APAO5'O2A128.8°120.0°
O1APAO3APB104.6°40.0°
O1APAO2AHO2A0.0°180.0°
O1APAO5'C5'174.6°55.0°
O5'PAO3APB142.3°160.0°
O5'PAO2AHO2A123.3°60.0°
PAO5'C5'C4'159.0°180.0°
PAO5'C5'H5'39.0°60.0°
PAO5'C5'H5'A80.9°60.0°
O2APAO3APB24.7°80.0°
O2APAO5'C5'56.6°65.0°
O5RPBO3AO1B111.0°120.0°
O5RPBO3AO2B111.1°120.0°
O5RPBO1BO2B120.8°120.0°
O5RPBO2BHO2B121.3°60.0°
PBO5RC5RC4R171.4°180.0°
PBO5RC5RH5R51.4°60.0°
PBO5RC5RH5RA68.6°59.9°
O3APBO1BO2B132.6°120.0°
O3APBO2BHO2B131.1°60.0°
O3APBO5RC5R68.8°175.0°
O1BPBO2BHO2B0.0°180.0°
O1BPBO5RC5R178.8°55.0°
O2BPBO5RC5R47.5°64.9°
C2'C1'O4'H1'117.8°119.0°
C1'C2'O2'C3'111.4°114.7°
C1'C2'O2'H2'125.5°122.6°
C1'C2'C3'H2'125.4°118.7°
C1'C2'O2'HO2'180.0°180.0°
C1'C2'C3'O3'147.9°118.6°
C1'C2'C3'C4'27.1°0.0°
C1'C2'C3'H3'93.3°118.6°
C2'C1'O4'C4'2.0°40.5°
O4'C1'C2'O2'99.2°142.7°
O4'C1'C2'C3'16.7°24.0°
O4'C1'C2'H2'139.0°94.7°
C1'O4'C4'C3'19.5°40.5°
C1'O4'C4'C5'144.5°159.4°
C1'O4'C4'H4'97.4°78.3°
H1'C1'C2'O2'22.6°23.8°
H1'C1'C2'C3'138.5°94.8°
H1'C1'C2'H2'99.2°146.4°
H1'C1'O4'C4'115.8°78.4°
C2RC1RO4RH1R120.0°119.4°
C2RC1RO4RH1RA120.0°119.5°
C2RC1RH1RH1RA121.4°121.1°
C1RC2RF2RC3R109.9°114.8°
C1RC2RF2RH2R127.0°122.6°
C1RC2RC3RH2R126.8°118.7°
C1RC2RC3RO3R105.1°139.0°
C1RC2RC3RC4R14.5°20.9°
C1RC2RC3RH3R136.0°97.3°
C2RC1RO4RC4R27.3°26.5°
O4RC1RH1RH1RA121.3°121.0°
O4RC1RC2RF2R91.9°116.6°
O4RC1RC2RC3R24.9°2.0°
O4RC1RC2RH2R146.7°120.8°
C1RO4RC4RC3R17.6°40.1°
C1RO4RC4RC5R132.3°158.5°
C1RO4RC4RH4R104.4°78.5°
H1RC1RC2RF2R28.1°2.8°
H1RC1RC2RC3R144.9°121.5°
H1RC1RC2RH2R93.3°119.7°
H1RC1RO4RC4R147.3°146.0°
H1RAC1RC2RF2R148.1°123.9°
H1RAC1RC2RC3R95.1°117.4°
H1RAC1RC2RH2R26.7°1.4°
H1RAC1RO4RC4R92.8°92.9°
O2'C2'C3'H2'122.5°122.7°
O2'C2'C3'O3'35.8°0.0°
O2'C2'C3'C4'85.0°118.7°
O2'C2'C3'H3'154.6°122.7°
C3'C2'O2'HO2'68.5°65.4°
C2'C3'O3'C4'113.4°114.6°
C2'C3'O3'H3'125.5°122.7°
C2'C3'C4'H3'125.3°118.6°
C2'C3'O3'HO3'180.0°61.4°
C2'C3'C4'O4'29.5°24.0°
C2'C3'C4'C5'146.1°142.8°
C2'C3'C4'H4'95.7°94.9°
H2'C2'O2'HO2'54.5°57.4°
H2'C2'C3'O3'86.7°122.7°
H2'C2'C3'C4'152.5°118.6°
H2'C2'C3'H3'32.1°0.0°
F2RC2RC3RH2R122.4°122.6°
F2RC2RC3RO3R144.1°102.2°
F2RC2RC3RC4R96.3°139.6°
F2RC2RC3RH3R25.2°21.4°
C2RC3RO3RC4R118.8°112.7°
C2RC3RO3RH3R119.8°123.7°
C2RC3RC4RH3R119.8°118.2°
C2RC3RO3RHO3R180.0°61.5°
C2RC3RC4RO4R0.8°37.0°
C2RC3RC4RC5R112.1°155.5°
C2RC3RC4RH4R124.1°81.7°
H2RC2RC3RO3R21.7°20.3°
H2RC2RC3RC4R141.3°97.8°
H2RC2RC3RH3R97.2°144.0°
O3'C3'C4'H3'119.4°122.7°
O3'C3'C4'O4'144.9°142.6°
O3'C3'C4'C5'98.6°98.5°
O3'C3'C4'H4'19.6°23.8°
C4'C3'O3'HO3'66.6°176.1°
C3'C4'O4'C5'124.9°118.8°
C3'C4'O4'H4'116.9°118.8°
C3'C4'C5'H4'117.0°122.3°
C3'C4'C5'O5'65.0°175.0°
C3'C4'C5'H5'55.0°55.0°
C3'C4'C5'H5'A175.0°65.0°
H3'C3'O3'HO3'54.5°61.3°
H3'C3'C4'O4'95.8°94.6°
H3'C3'C4'C5'20.8°24.2°
H3'C3'C4'H4'139.0°146.5°
O3RC3RC4RH3R118.9°123.6°
O3RC3RC4RO4R122.1°155.2°
O3RC3RC4RC5R126.6°86.3°
O3RC3RC4RH4R2.8°36.5°
C4RC3RO3RHO3R61.3°174.2°
C3RC4RO4RC5R114.7°118.5°
C3RC4RO4RH4R122.1°118.6°
C3RC4RC5RH4R122.4°122.8°
C3RC4RC5RO5R176.4°175.0°
C3RC4RC5RH5R63.6°55.0°
C3RC4RC5RH5RA56.4°65.0°
H3RC3RO3RHO3R60.2°62.2°
H3RC3RC4RO4R119.0°81.2°
H3RC3RC4RC5R7.7°37.3°
H3RC3RC4RH4R116.1°160.1°
O4'C4'C5'H4'125.2°122.3°
O4'C4'C5'O5'177.2°69.6°
O4'C4'C5'H5'62.8°170.3°
O4'C4'C5'H5'A57.2°50.4°
C4'C5'O5'H5'120.0°120.0°
C4'C5'O5'H5'A120.0°120.0°
C4'C5'H5'H5'A121.7°120.0°
H4'C4'C5'O5'52.0°52.7°
H4'C4'C5'H5'172.0°67.4°
H4'C4'C5'H5'A68.0°172.7°
O4RC4RC5RH4R124.6°123.1°
O4RC4RC5RO5R63.4°71.0°
O4RC4RC5RH5R176.6°169.0°
O4RC4RC5RH5RA56.6°49.0°
C4RC5RO5RH5R120.0°120.0°
C4RC5RO5RH5RA120.0°120.0°
C4RC5RH5RH5RA121.2°120.0°
H4RC4RC5RO5R61.2°52.2°
H4RC4RC5RH5R58.8°67.8°
H4RC4RC5RH5RA178.8°172.2°
O5'C5'H5'H5'A121.7°120.0°
O5RC5RH5RH5RA121.2°119.9°

246704

PDB entries from 2025-12-24

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