AQ3
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
OXT | C | doub | 1.21Å | 1.25Å | |
O1 | C | sing | 1.34Å | 1.26Å | |
C | CA | sing | 1.51Å | 1.48Å | |
O3 | C31 | sing | 1.36Å | 1.41Å | |
C2A | C21 | sing | 1.51Å | 1.56Å | |
CA | N2 | sing | 1.47Å | 1.44Å | |
CA | CB | sing | 1.53Å | 1.50Å | |
N2 | C4A | sing | 1.47Å | 1.43Å | |
O | C2 | sing | 1.36Å | 1.42Å | |
C31 | C21 | doub | 1.39Å | 1.39Å | Aromatic |
C31 | C41 | sing | 1.39Å | 1.43Å | Aromatic |
C21 | N1 | sing | 1.32Å | 1.33Å | Aromatic |
N | CB | sing | 1.47Å | 1.44Å | |
N | C1 | sing | 1.40Å | 1.46Å | |
C4A | C41 | sing | 1.51Å | 1.54Å | |
C41 | C51 | doub | 1.38Å | 1.42Å | Aromatic |
C2 | C1 | doub | 1.39Å | 1.37Å | Aromatic |
C2 | C3 | sing | 1.39Å | 1.42Å | Aromatic |
N1 | C61 | doub | 1.32Å | 1.31Å | Aromatic |
C1 | C6 | sing | 1.39Å | 1.42Å | Aromatic |
C3 | C4 | doub | 1.38Å | 1.41Å | Aromatic |
C51 | C61 | sing | 1.38Å | 1.38Å | Aromatic |
C51 | C5A | sing | 1.51Å | 1.53Å | |
O4P | C5A | sing | 1.43Å | 1.46Å | |
O4P | P | sing | 1.61Å | 1.62Å | |
C6 | C5 | doub | 1.38Å | 1.39Å | Aromatic |
O1P | P | doub | 1.48Å | 1.54Å | |
O3P | P | sing | 1.61Å | 1.53Å | |
C4 | C5 | sing | 1.38Å | 1.41Å | Aromatic |
P | O2P | sing | 1.61Å | 1.52Å | |
O | H1 | sing | 0.97Å | 0.95Å | |
C3 | H2 | sing | 1.08Å | 1.08Å | |
C4 | H3 | sing | 1.08Å | 1.08Å | |
C5 | H4 | sing | 1.08Å | 1.08Å | |
C6 | H5 | sing | 1.08Å | 1.08Å | |
N | H6 | sing | 0.97Å | 1.00Å | |
O3P | H7 | sing | 0.97Å | 0.95Å | |
O2P | H8 | sing | 0.97Å | 0.95Å | |
C5A | H9 | sing | 1.09Å | 1.10Å | |
C5A | H10 | sing | 1.09Å | 1.10Å | |
C61 | H11 | sing | 1.08Å | 1.08Å | |
O3 | H12 | sing | 0.97Å | 0.95Å | |
C2A | H13 | sing | 1.09Å | 1.10Å | |
C2A | H14 | sing | 1.09Å | 1.10Å | |
C2A | H15 | sing | 1.09Å | 1.10Å | |
C4A | H16 | sing | 1.09Å | 1.10Å | |
C4A | H17 | sing | 1.09Å | 1.10Å | |
N2 | H18 | sing | 1.01Å | 1.00Å | |
CA | H20 | sing | 1.09Å | 1.10Å | |
O1 | H21 | sing | 0.97Å | 0.95Å | |
CB | H22 | sing | 1.09Å | 1.10Å | |
CB | H23 | sing | 1.09Å | 1.10Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
OXT | C | O1 | 123.8° | 120.0° |
OXT | C | CA | 117.8° | 120.0° |
O1 | C | CA | 118.3° | 120.0° |
C | O1 | H21 | 109.5° | 117.0° |
C | CA | N2 | 109.9° | 109.5° |
C | CA | CB | 116.0° | 109.4° |
C | CA | H20 | 102.4° | 109.5° |
O3 | C31 | C21 | 117.1° | 120.5° |
O3 | C31 | C41 | 123.1° | 120.4° |
C31 | O3 | H12 | 109.5° | 113.9° |
C2A | C21 | C31 | 120.5° | 119.6° |
C2A | C21 | N1 | 118.8° | 119.7° |
C21 | C2A | H13 | 109.5° | 109.5° |
C21 | C2A | H14 | 109.5° | 109.4° |
C21 | C2A | H15 | 109.5° | 109.5° |
N2 | CA | CB | 120.5° | 109.5° |
CA | N2 | C4A | 115.1° | 111.0° |
CA | N2 | H18 | 108.1° | 111.0° |
N2 | CA | H20 | 102.7° | 109.5° |
CA | CB | N | 116.5° | 109.4° |
CB | CA | H20 | 102.2° | 109.4° |
CA | CB | H22 | 107.7° | 109.5° |
CA | CB | H23 | 107.7° | 109.5° |
N2 | C4A | C41 | 109.9° | 109.5° |
N2 | C4A | H16 | 109.4° | 109.5° |
N2 | C4A | H17 | 109.4° | 109.5° |
C4A | N2 | H18 | 108.0° | 111.0° |
O | C2 | C1 | 117.5° | 120.1° |
O | C2 | C3 | 122.5° | 120.0° |
C2 | O | H1 | 109.5° | 113.9° |
C21 | C31 | C41 | 119.8° | 119.0° |
C31 | C21 | N1 | 120.7° | 120.7° |
C31 | C41 | C4A | 124.6° | 120.8° |
C31 | C41 | C51 | 115.8° | 118.4° |
C21 | N1 | C61 | 121.8° | 121.8° |
CB | N | C1 | 115.0° | 120.0° |
CB | N | H6 | 108.1° | 120.0° |
N | CB | H22 | 107.7° | 109.4° |
N | CB | H23 | 107.7° | 109.5° |
N | C1 | C2 | 118.7° | 120.1° |
N | C1 | C6 | 121.4° | 120.1° |
C1 | N | H6 | 108.1° | 120.0° |
C4A | C41 | C51 | 119.6° | 120.8° |
C41 | C4A | H16 | 109.4° | 109.5° |
C41 | C4A | H17 | 109.3° | 109.5° |
C41 | C51 | C61 | 120.5° | 119.2° |
C41 | C51 | C5A | 120.6° | 120.4° |
C1 | C2 | C3 | 119.9° | 119.8° |
C2 | C1 | C6 | 119.9° | 119.8° |
C2 | C3 | C4 | 120.6° | 120.0° |
C2 | C3 | H2 | 119.7° | 120.0° |
N1 | C61 | C51 | 121.4° | 120.9° |
N1 | C61 | H11 | 119.3° | 119.5° |
C1 | C6 | C5 | 120.6° | 120.0° |
C1 | C6 | H5 | 119.7° | 120.0° |
C3 | C4 | C5 | 119.1° | 120.2° |
C4 | C3 | H2 | 119.7° | 120.0° |
C3 | C4 | H3 | 120.4° | 119.9° |
C61 | C51 | C5A | 119.0° | 120.4° |
C51 | C61 | H11 | 119.3° | 119.6° |
C51 | C5A | O4P | 107.8° | 109.4° |
C51 | C5A | H9 | 109.9° | 109.4° |
C51 | C5A | H10 | 109.9° | 109.5° |
C5A | O4P | P | 114.8° | 123.0° |
O4P | C5A | H9 | 109.9° | 109.5° |
O4P | C5A | H10 | 109.9° | 109.5° |
O4P | P | O1P | 108.1° | 109.5° |
O4P | P | O3P | 110.4° | 109.5° |
O4P | P | O2P | 110.7° | 109.5° |
C6 | C5 | C4 | 119.9° | 120.1° |
C6 | C5 | H4 | 120.1° | 119.9° |
C5 | C6 | H5 | 119.7° | 120.0° |
O1P | P | O3P | 108.8° | 109.4° |
O1P | P | O2P | 109.2° | 109.5° |
O3P | P | O2P | 109.7° | 109.5° |
P | O3P | H7 | 109.5° | 114.0° |
C5 | C4 | H3 | 120.4° | 119.9° |
C4 | C5 | H4 | 120.1° | 120.0° |
P | O2P | H8 | 109.5° | 114.0° |
H9 | C5A | H10 | 109.5° | 109.5° |
H13 | C2A | H14 | 109.5° | 109.5° |
H13 | C2A | H15 | 109.4° | 109.5° |
H14 | C2A | H15 | 109.5° | 109.5° |
H16 | C4A | H17 | 109.5° | 109.5° |
H22 | CB | H23 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
OXT | C | O1 | CA | 176.4° | 180.0° |
OXT | C | CA | N2 | 16.1° | 0.0° |
OXT | C | CA | CB | 157.0° | 120.0° |
OXT | C | CA | H20 | 92.6° | 120.0° |
OXT | C | O1 | H21 | 0.0° | 0.0° |
O1 | C | CA | N2 | 167.4° | 180.0° |
O1 | C | CA | CB | 26.4° | 60.0° |
O1 | C | CA | H20 | 84.0° | 59.9° |
C | CA | N2 | CB | 138.9° | 120.0° |
C | CA | N2 | H20 | 108.4° | 120.1° |
C | CA | CB | H20 | 110.5° | 120.0° |
C | CA | N2 | C4A | 148.5° | 85.0° |
C | CA | CB | N | 59.6° | 175.0° |
C | CA | N2 | H18 | 27.6° | 151.0° |
CA | C | O1 | H21 | 176.4° | 180.0° |
C | CA | CB | H22 | 179.4° | 55.0° |
C | CA | CB | H23 | 61.5° | 65.0° |
O3 | C31 | C21 | C2A | 1.3° | 0.8° |
O3 | C31 | C21 | C41 | 179.0° | 179.2° |
O3 | C31 | C21 | N1 | 179.0° | 180.0° |
O3 | C31 | C41 | C4A | 0.9° | 0.4° |
O3 | C31 | C41 | C51 | 179.8° | 179.7° |
C2A | C21 | C31 | N1 | 177.7° | 179.2° |
C2A | C21 | C31 | C41 | 179.7° | 180.0° |
C2A | C21 | N1 | C61 | 180.0° | 179.8° |
C21 | C2A | H13 | H14 | 120.0° | 120.0° |
C21 | C2A | H13 | H15 | 120.0° | 120.0° |
C21 | C2A | H14 | H15 | 120.0° | 120.0° |
N2 | CA | CB | H20 | 112.9° | 120.0° |
CA | N2 | C4A | H18 | 120.8° | 124.0° |
N2 | CA | CB | N | 77.0° | 55.0° |
CA | N2 | C4A | C41 | 175.4° | 180.0° |
CA | N2 | C4A | H16 | 55.3° | 60.0° |
CA | N2 | C4A | H17 | 64.6° | 60.0° |
N2 | CA | CB | H22 | 44.0° | 65.0° |
N2 | CA | CB | H23 | 161.9° | 175.0° |
CB | CA | N2 | C4A | 9.5° | 155.0° |
CA | CB | N | H22 | 121.0° | 120.0° |
CA | CB | N | H23 | 121.0° | 120.0° |
CA | CB | N | C1 | 178.9° | 180.0° |
CA | CB | N | H6 | 60.2° | 0.1° |
CB | CA | N2 | H18 | 111.3° | 31.1° |
CA | CB | H22 | H23 | 116.8° | 120.1° |
N2 | C4A | C41 | C31 | 4.3° | 90.0° |
N2 | C4A | C41 | H16 | 120.1° | 120.0° |
N2 | C4A | C41 | H17 | 120.0° | 120.0° |
N2 | C4A | C41 | C51 | 176.9° | 90.0° |
N2 | C4A | H16 | H17 | 119.8° | 120.0° |
C4A | N2 | CA | H20 | 103.1° | 35.0° |
O | C2 | C1 | N | 2.4° | 0.0° |
O | C2 | C1 | C3 | 178.5° | 179.7° |
O | C2 | C1 | C6 | 179.0° | 179.7° |
O | C2 | C3 | C4 | 178.7° | 179.9° |
O | C2 | C3 | H2 | 1.3° | 0.0° |
C21 | C31 | C41 | C4A | 179.9° | 179.5° |
C21 | C31 | C41 | C51 | 1.2° | 0.6° |
C31 | C21 | N1 | C61 | 2.3° | 0.5° |
C21 | C31 | O3 | H12 | 180.0° | 90.0° |
C31 | C21 | C2A | H13 | 177.7° | 90.0° |
C31 | C21 | C2A | H14 | 62.2° | 150.0° |
C31 | C21 | C2A | H15 | 57.8° | 30.0° |
C41 | C31 | C21 | N1 | 2.0° | 0.8° |
C31 | C41 | C4A | C51 | 178.8° | 179.9° |
C31 | C41 | C51 | C61 | 0.8° | 0.1° |
C31 | C41 | C51 | C5A | 179.1° | 179.8° |
C41 | C31 | O3 | H12 | 1.0° | 90.9° |
C31 | C41 | C4A | H16 | 115.8° | 30.0° |
C31 | C41 | C4A | H17 | 124.3° | 150.0° |
C21 | N1 | C61 | C51 | 1.8° | 0.0° |
C21 | N1 | C61 | H11 | 178.2° | 180.0° |
N1 | C21 | C2A | H13 | 0.0° | 90.8° |
N1 | C21 | C2A | H14 | 120.0° | 29.2° |
N1 | C21 | C2A | H15 | 120.0° | 149.2° |
CB | N | C1 | H6 | 120.8° | 179.9° |
CB | N | C1 | C2 | 119.9° | 180.0° |
CB | N | C1 | C6 | 58.7° | 0.3° |
N | CB | CA | H20 | 170.1° | 65.0° |
N | CB | H22 | H23 | 116.8° | 120.0° |
N | C1 | C2 | C6 | 178.6° | 179.7° |
N | C1 | C2 | C3 | 179.1° | 179.7° |
N | C1 | C6 | C5 | 178.8° | 179.8° |
N | C1 | C6 | H5 | 1.2° | 0.0° |
C1 | N | CB | H22 | 57.9° | 60.0° |
C1 | N | CB | H23 | 60.0° | 60.0° |
C4A | C41 | C51 | C61 | 179.7° | 180.0° |
C4A | C41 | C51 | C5A | 0.2° | 0.2° |
C41 | C4A | H16 | H17 | 119.8° | 120.0° |
C41 | C4A | N2 | H18 | 63.8° | 56.0° |
C41 | C51 | C61 | N1 | 1.1° | 0.2° |
C41 | C51 | C61 | C5A | 179.9° | 179.8° |
C41 | C51 | C5A | O4P | 58.7° | 179.8° |
C41 | C51 | C5A | H9 | 178.5° | 59.8° |
C41 | C51 | C5A | H10 | 61.0° | 60.2° |
C41 | C51 | C61 | H11 | 178.9° | 179.8° |
C51 | C41 | C4A | H16 | 63.1° | 149.9° |
C51 | C41 | C4A | H17 | 56.8° | 30.0° |
C1 | C2 | C3 | C4 | 0.2° | 0.4° |
C2 | C1 | C6 | C5 | 0.2° | 0.5° |
C1 | C2 | O | H1 | 180.0° | 90.0° |
C1 | C2 | C3 | H2 | 179.8° | 179.7° |
C2 | C1 | C6 | H5 | 179.8° | 179.7° |
C2 | C1 | N | H6 | 0.9° | 0.1° |
C3 | C2 | C1 | C6 | 0.5° | 0.6° |
C2 | C3 | C4 | H2 | 180.0° | 179.9° |
C2 | C3 | C4 | C5 | 0.3° | 0.1° |
C3 | C2 | O | H1 | 1.5° | 89.7° |
C2 | C3 | C4 | H3 | 179.7° | 180.0° |
N1 | C61 | C51 | H11 | 180.0° | 180.0° |
N1 | C61 | C51 | C5A | 178.8° | 180.0° |
C1 | C6 | C5 | H5 | 180.0° | 179.8° |
C1 | C6 | C5 | C4 | 0.2° | 0.3° |
C1 | C6 | C5 | H4 | 179.8° | 179.8° |
C6 | C1 | N | H6 | 179.5° | 179.8° |
C3 | C4 | C5 | C6 | 0.5° | 0.1° |
C3 | C4 | C5 | H3 | 180.0° | 179.9° |
C3 | C4 | C5 | H4 | 179.5° | 180.0° |
C61 | C51 | C5A | O4P | 121.4° | 0.0° |
C61 | C51 | C5A | H9 | 1.6° | 120.0° |
C61 | C51 | C5A | H10 | 118.9° | 120.0° |
C51 | C5A | O4P | H9 | 119.7° | 119.9° |
C51 | C5A | O4P | H10 | 119.8° | 120.0° |
C51 | C5A | O4P | P | 120.3° | 180.0° |
C51 | C5A | H9 | H10 | 120.8° | 120.0° |
C5A | C51 | C61 | H11 | 1.2° | 0.0° |
C5A | O4P | P | O1P | 175.1° | 55.0° |
C5A | O4P | P | O3P | 66.1° | 175.0° |
C5A | O4P | P | O2P | 55.6° | 65.0° |
O4P | C5A | H9 | H10 | 120.8° | 120.1° |
O4P | P | O1P | O3P | 119.9° | 120.0° |
O4P | P | O1P | O2P | 120.5° | 120.0° |
O4P | P | O3P | O2P | 122.3° | 120.0° |
O4P | P | O3P | H7 | 118.4° | 180.0° |
O4P | P | O2P | H8 | 118.8° | 60.0° |
P | O4P | C5A | H9 | 0.6° | 60.1° |
P | O4P | C5A | H10 | 119.9° | 60.0° |
C6 | C5 | C4 | H4 | 180.0° | 180.0° |
C6 | C5 | C4 | H3 | 179.5° | 180.0° |
O1P | P | O3P | O2P | 119.3° | 120.0° |
O1P | P | O3P | H7 | 0.0° | 60.1° |
O1P | P | O2P | H8 | 0.0° | 180.0° |
O3P | P | O2P | H8 | 119.1° | 60.0° |
C5 | C4 | C3 | H2 | 179.7° | 180.0° |
C4 | C5 | C6 | H5 | 179.8° | 179.9° |
O2P | P | O3P | H7 | 119.3° | 60.0° |
H2 | C3 | C4 | H3 | 0.2° | 0.1° |
H3 | C4 | C5 | H4 | 0.5° | 0.0° |
H4 | C5 | C6 | H5 | 0.2° | 0.0° |
H6 | N | CB | H22 | 178.7° | 120.1° |
H6 | N | CB | H23 | 60.8° | 119.9° |
H13 | C2A | H14 | H15 | 119.9° | 120.0° |
H16 | C4A | N2 | H18 | 176.1° | 64.0° |
H17 | C4A | N2 | H18 | 56.2° | 176.0° |
H18 | N2 | CA | H20 | 136.1° | 88.9° |
H20 | CA | CB | H22 | 68.9° | 175.0° |
H20 | CA | CB | H23 | 49.1° | 55.0° |