APH
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| N | CA | sing | 1.47Å | 1.43Å | |
| N | H | sing | 1.01Å | 1.00Å | |
| N | H2 | sing | 1.01Å | 1.00Å | |
| CA | C | sing | 1.51Å | 1.52Å | |
| CA | CB | sing | 1.53Å | 1.53Å | |
| CA | HA | sing | 1.09Å | 1.10Å | |
| C | O | doub | 1.21Å | 1.23Å | |
| C | OXT | sing | 1.34Å | 1.35Å | |
| CB | CG | sing | 1.51Å | 1.52Å | |
| CB | HB2 | sing | 1.09Å | 1.10Å | |
| CB | HB3 | sing | 1.09Å | 1.10Å | |
| CG | CD1 | doub | 1.38Å | 1.38Å | Aromatic |
| CG | CD2 | sing | 1.38Å | 1.40Å | Aromatic |
| CD1 | CE1 | sing | 1.38Å | 1.42Å | Aromatic |
| CD1 | HD1 | sing | 1.08Å | 1.08Å | |
| CD2 | CE2 | doub | 1.38Å | 1.41Å | Aromatic |
| CD2 | HD2 | sing | 1.08Å | 1.08Å | |
| CE1 | CZ | doub | 1.39Å | 1.39Å | Aromatic |
| CE1 | HE1 | sing | 1.08Å | 1.08Å | |
| CE2 | CZ | sing | 1.39Å | 1.38Å | Aromatic |
| CE2 | HE2 | sing | 1.08Å | 1.08Å | |
| CZ | CF | sing | 1.48Å | 1.45Å | |
| CF | NG1 | doub | 1.30Å | 1.33Å | |
| CF | NG2 | sing | 1.38Å | 1.34Å | |
| NG1 | HG1 | sing | 0.97Å | 1.00Å | |
| NG2 | HG21 | sing | 0.97Å | 1.00Å | |
| NG2 | HG22 | sing | 0.97Å | 1.00Å | |
| OXT | HXT | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| CA | N | H | 109.5° | 111.0° |
| CA | N | H2 | 109.5° | 111.0° |
| N | CA | C | 104.0° | 109.4° |
| N | CA | CB | 111.1° | 109.4° |
| N | CA | HA | 112.8° | 109.4° |
| H | N | H2 | 109.5° | 111.0° |
| C | CA | CB | 111.6° | 109.5° |
| C | CA | HA | 112.2° | 109.5° |
| CA | C | O | 120.3° | 120.0° |
| CA | C | OXT | 116.3° | 120.0° |
| CB | CA | HA | 105.3° | 109.5° |
| CA | CB | CG | 114.1° | 109.5° |
| CA | CB | HB2 | 108.0° | 109.4° |
| CA | CB | HB3 | 106.9° | 109.5° |
| O | C | OXT | 123.4° | 120.0° |
| C | OXT | HXT | 109.5° | 117.0° |
| CG | CB | HB2 | 108.0° | 109.5° |
| CG | CB | HB3 | 106.9° | 109.5° |
| CB | CG | CD1 | 121.4° | 119.9° |
| CB | CG | CD2 | 120.4° | 119.8° |
| HB2 | CB | HB3 | 113.1° | 109.4° |
| CD1 | CG | CD2 | 118.2° | 120.2° |
| CG | CD1 | CE1 | 120.6° | 120.2° |
| CG | CD1 | HD1 | 119.7° | 119.9° |
| CG | CD2 | CE2 | 121.1° | 120.1° |
| CG | CD2 | HD2 | 119.5° | 119.9° |
| CE1 | CD1 | HD1 | 119.7° | 119.9° |
| CD1 | CE1 | CZ | 121.0° | 119.9° |
| CD1 | CE1 | HE1 | 119.5° | 120.1° |
| CE2 | CD2 | HD2 | 119.5° | 120.0° |
| CD2 | CE2 | CZ | 120.8° | 119.9° |
| CD2 | CE2 | HE2 | 119.6° | 120.0° |
| CZ | CE1 | HE1 | 119.5° | 120.0° |
| CE1 | CZ | CE2 | 118.3° | 119.7° |
| CE1 | CZ | CF | 121.8° | 120.1° |
| CZ | CE2 | HE2 | 119.6° | 120.0° |
| CE2 | CZ | CF | 119.9° | 120.2° |
| CZ | CF | NG1 | 121.6° | 120.0° |
| CZ | CF | NG2 | 118.4° | 120.0° |
| NG1 | CF | NG2 | 120.0° | 120.0° |
| CF | NG1 | HG1 | 109.4° | 120.0° |
| CF | NG2 | HG21 | 109.4° | 120.0° |
| CF | NG2 | HG22 | 125.3° | 120.0° |
| HG21 | NG2 | HG22 | 125.3° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| CA | N | H | H2 | 120.0° | 124.0° |
| N | CA | C | CB | 119.9° | 120.0° |
| N | CA | C | HA | 122.2° | 120.0° |
| N | CA | CB | HA | 122.4° | 120.0° |
| N | CA | C | O | 84.6° | 20.0° |
| N | CA | C | OXT | 95.3° | 160.0° |
| N | CA | CB | CG | 63.7° | 65.0° |
| N | CA | CB | HB2 | 176.3° | 175.0° |
| N | CA | CB | HB3 | 54.3° | 55.0° |
| H | N | CA | C | 44.0° | 60.0° |
| H | N | CA | CB | 76.2° | 60.0° |
| H | N | CA | HA | 165.8° | 180.0° |
| H2 | N | CA | C | 76.0° | 64.0° |
| H2 | N | CA | CB | 163.8° | 176.0° |
| H2 | N | CA | HA | 45.9° | 56.0° |
| C | CA | CB | HA | 122.0° | 120.1° |
| CA | C | O | OXT | 179.9° | 179.9° |
| C | CA | CB | CG | 179.3° | 175.0° |
| C | CA | CB | HB2 | 60.7° | 55.0° |
| C | CA | CB | HB3 | 61.3° | 64.9° |
| CA | C | OXT | HXT | 179.9° | 180.0° |
| CB | CA | C | O | 35.3° | 100.0° |
| CB | CA | C | OXT | 144.9° | 80.0° |
| CA | CB | CG | HB2 | 120.0° | 120.0° |
| CA | CB | CG | HB3 | 118.0° | 120.0° |
| CA | CB | HB2 | HB3 | 118.1° | 120.0° |
| CA | CB | CG | CD1 | 83.0° | 90.0° |
| CA | CB | CG | CD2 | 93.6° | 90.3° |
| HA | CA | C | O | 153.2° | 140.0° |
| HA | CA | C | OXT | 26.9° | 40.1° |
| HA | CA | CB | CG | 58.7° | 54.9° |
| HA | CA | CB | HB2 | 61.3° | 65.1° |
| HA | CA | CB | HB3 | 176.7° | 175.0° |
| O | C | OXT | HXT | 0.0° | 0.1° |
| CG | CB | HB2 | HB3 | 118.1° | 120.0° |
| CB | CG | CD1 | CD2 | 176.6° | 179.7° |
| CB | CG | CD1 | CE1 | 176.0° | 180.0° |
| CB | CG | CD1 | HD1 | 4.0° | 0.1° |
| CB | CG | CD2 | CE2 | 175.9° | 179.9° |
| CB | CG | CD2 | HD2 | 4.1° | 0.0° |
| HB2 | CB | CG | CD1 | 157.0° | 30.0° |
| HB2 | CB | CG | CD2 | 26.4° | 149.7° |
| HB3 | CB | CG | CD1 | 35.0° | 150.0° |
| HB3 | CB | CG | CD2 | 148.5° | 29.8° |
| CG | CD1 | CE1 | HD1 | 180.0° | 179.9° |
| CD1 | CG | CD2 | CE2 | 0.7° | 0.2° |
| CD1 | CG | CD2 | HD2 | 179.3° | 179.7° |
| CG | CD1 | CE1 | CZ | 0.0° | 0.0° |
| CG | CD1 | CE1 | HE1 | 180.0° | 179.9° |
| CD2 | CG | CD1 | CE1 | 0.6° | 0.3° |
| CD2 | CG | CD1 | HD1 | 179.4° | 179.8° |
| CG | CD2 | CE2 | HD2 | 180.0° | 179.9° |
| CG | CD2 | CE2 | CZ | 0.3° | 0.1° |
| CG | CD2 | CE2 | HE2 | 179.7° | 180.0° |
| CD1 | CE1 | CZ | HE1 | 180.0° | 179.9° |
| CD1 | CE1 | CZ | CE2 | 0.4° | 0.3° |
| CD1 | CE1 | CZ | CF | 178.8° | 180.0° |
| HD1 | CD1 | CE1 | CZ | 180.0° | 179.9° |
| HD1 | CD1 | CE1 | HE1 | 0.0° | 0.0° |
| CD2 | CE2 | CZ | CE1 | 0.3° | 0.3° |
| CD2 | CE2 | CZ | HE2 | 180.0° | 179.9° |
| CD2 | CE2 | CZ | CF | 179.0° | 179.9° |
| HD2 | CD2 | CE2 | CZ | 179.7° | 180.0° |
| HD2 | CD2 | CE2 | HE2 | 0.3° | 0.1° |
| CE1 | CZ | CE2 | CF | 179.3° | 179.8° |
| CE1 | CZ | CE2 | HE2 | 179.7° | 179.8° |
| CE1 | CZ | CF | NG1 | 6.1° | 0.0° |
| CE1 | CZ | CF | NG2 | 173.9° | 180.0° |
| HE1 | CE1 | CZ | CE2 | 179.6° | 179.8° |
| HE1 | CE1 | CZ | CF | 1.2° | 0.0° |
| CE2 | CZ | CF | NG1 | 173.2° | 179.7° |
| CE2 | CZ | CF | NG2 | 6.9° | 0.2° |
| HE2 | CE2 | CZ | CF | 1.0° | 0.0° |
| CZ | CF | NG1 | NG2 | 180.0° | 179.9° |
| CZ | CF | NG1 | HG1 | 180.0° | 180.0° |
| CZ | CF | NG2 | HG21 | 0.0° | 0.0° |
| CZ | CF | NG2 | HG22 | 180.0° | 179.9° |
| NG1 | CF | NG2 | HG21 | 180.0° | 179.9° |
| NG1 | CF | NG2 | HG22 | 0.0° | 0.0° |
| NG2 | CF | NG1 | HG1 | 0.1° | 0.1° |
| CF | NG2 | HG21 | HG22 | 180.0° | 179.9° |
