AFX
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C1 | O1 | sing | 1.43Å | 1.43Å | |
| C1 | C4' | sing | 1.51Å | 1.49Å | |
| F1 | C5' | sing | 1.35Å | 1.38Å | |
| N1 | C2 | doub | 1.32Å | 1.35Å | Aromatic |
| N1 | C6 | sing | 1.33Å | 1.35Å | Aromatic |
| C2 | N3 | sing | 1.32Å | 1.34Å | Aromatic |
| N3 | C4 | doub | 1.33Å | 1.51Å | Aromatic |
| C4 | C5 | sing | 1.41Å | 1.46Å | Aromatic |
| C4 | N9 | sing | 1.37Å | 1.39Å | Aromatic |
| C5 | C6 | doub | 1.41Å | 1.51Å | Aromatic |
| C5 | N7 | sing | 1.35Å | 1.39Å | Aromatic |
| C6 | N6 | sing | 1.38Å | 1.31Å | |
| N7 | C8 | doub | 1.30Å | 1.37Å | Aromatic |
| C8 | N9 | sing | 1.36Å | 1.38Å | Aromatic |
| N9 | C1' | sing | 1.47Å | 1.44Å | |
| C1' | C2' | sing | 1.54Å | 1.56Å | |
| C1' | C5' | sing | 1.51Å | 1.50Å | |
| C2' | O2' | sing | 1.43Å | 1.43Å | |
| C2' | C3' | sing | 1.51Å | 1.55Å | |
| C3' | O3' | doub | 1.21Å | 1.23Å | |
| C3' | C4' | sing | 1.41Å | 1.51Å | |
| C4' | C5' | doub | 1.33Å | 1.32Å | |
| C1 | H1 | sing | 1.09Å | 1.10Å | |
| C1 | H1A | sing | 1.09Å | 1.10Å | |
| O1 | HO1 | sing | 0.97Å | 0.95Å | |
| C2 | H2 | sing | 1.08Å | 1.08Å | |
| N6 | HN6 | sing | 0.97Å | 1.00Å | |
| N6 | HN6A | sing | 0.97Å | 1.00Å | |
| C8 | H8 | sing | 1.08Å | 1.08Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO2' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1 | C1 | C4' | 107.8° | 109.4° |
| O1 | C1 | H1 | 110.0° | 109.5° |
| O1 | C1 | H1A | 110.0° | 109.5° |
| C1 | O1 | HO1 | 109.5° | 113.9° |
| C1 | C4' | C3' | 126.7° | 123.4° |
| C1 | C4' | C5' | 126.6° | 123.4° |
| C4' | C1 | H1 | 110.0° | 109.5° |
| C4' | C1 | H1A | 110.0° | 109.5° |
| F1 | C5' | C1' | 121.1° | 125.1° |
| F1 | C5' | C4' | 121.5° | 125.0° |
| C2 | N1 | C6 | 120.0° | 121.2° |
| N1 | C2 | N3 | 128.2° | 122.5° |
| N1 | C2 | H2 | 115.9° | 118.8° |
| N1 | C6 | C5 | 121.0° | 118.4° |
| N1 | C6 | N6 | 116.9° | 120.8° |
| C2 | N3 | C4 | 115.8° | 120.7° |
| N3 | C2 | H2 | 115.9° | 118.8° |
| N3 | C4 | C5 | 118.9° | 119.0° |
| N3 | C4 | N9 | 133.9° | 135.0° |
| C5 | C4 | N9 | 107.2° | 106.0° |
| C4 | C5 | C6 | 116.1° | 118.2° |
| C4 | C5 | N7 | 112.7° | 107.1° |
| C4 | N9 | C8 | 100.6° | 107.5° |
| C4 | N9 | C1' | 116.2° | 126.2° |
| C6 | C5 | N7 | 131.2° | 134.7° |
| C5 | C6 | N6 | 122.0° | 120.8° |
| C5 | N7 | C8 | 97.7° | 109.4° |
| C6 | N6 | HN6 | 109.5° | 120.0° |
| C6 | N6 | HN6A | 109.5° | 120.0° |
| N7 | C8 | N9 | 121.7° | 110.0° |
| N7 | C8 | H8 | 119.1° | 125.0° |
| C8 | N9 | C1' | 143.2° | 126.3° |
| N9 | C8 | H8 | 119.1° | 125.0° |
| N9 | C1' | C2' | 117.7° | 110.4° |
| N9 | C1' | C5' | 114.5° | 110.4° |
| N9 | C1' | H1' | 97.9° | 110.3° |
| C2' | C1' | C5' | 103.2° | 104.7° |
| C1' | C2' | O2' | 114.3° | 110.5° |
| C1' | C2' | C3' | 103.7° | 103.9° |
| C2' | C1' | H1' | 110.2° | 110.4° |
| C1' | C2' | H2' | 116.1° | 110.5° |
| C1' | C5' | C4' | 117.4° | 109.9° |
| C5' | C1' | H1' | 113.8° | 110.5° |
| O2' | C2' | C3' | 122.1° | 110.5° |
| O2' | C2' | H2' | 94.1° | 110.5° |
| C2' | O2' | HO2' | 109.5° | 114.0° |
| C2' | C3' | O3' | 125.0° | 125.9° |
| C2' | C3' | C4' | 108.9° | 108.3° |
| C3' | C2' | H2' | 106.9° | 110.7° |
| O3' | C3' | C4' | 126.1° | 125.9° |
| C3' | C4' | C5' | 106.7° | 113.2° |
| H1 | C1 | H1A | 108.9° | 109.5° |
| HN6 | N6 | HN6A | 109.4° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1 | C1 | C4' | H1 | 120.0° | 120.0° |
| O1 | C1 | C4' | H1A | 120.0° | 119.9° |
| O1 | C1 | C4' | C3' | 120.7° | 180.0° |
| O1 | C1 | C4' | C5' | 59.2° | 0.1° |
| O1 | C1 | H1 | H1A | 120.7° | 120.0° |
| C1 | C4' | C5' | F1 | 0.9° | 0.0° |
| C1 | C4' | C5' | C1' | 178.6° | 180.0° |
| C1 | C4' | C3' | C2' | 179.4° | 180.0° |
| C1 | C4' | C3' | O3' | 0.2° | 0.1° |
| C1 | C4' | C3' | C5' | 179.9° | 180.0° |
| C4' | C1 | H1 | H1A | 120.7° | 120.0° |
| C4' | C1 | O1 | HO1 | 180.0° | 180.0° |
| F1 | C5' | C1' | N9 | 48.7° | 61.2° |
| F1 | C5' | C1' | C2' | 177.8° | 180.0° |
| F1 | C5' | C1' | C4' | 179.6° | 179.9° |
| F1 | C5' | C4' | C3' | 179.1° | 180.0° |
| F1 | C5' | C1' | H1' | 62.7° | 61.1° |
| N1 | C2 | N3 | H2 | 180.0° | 180.0° |
| N1 | C2 | N3 | C4 | 0.2° | 0.0° |
| C2 | N1 | C6 | C5 | 0.3° | 0.0° |
| C2 | N1 | C6 | N6 | 180.0° | 180.0° |
| C6 | N1 | C2 | N3 | 0.3° | 0.0° |
| N1 | C6 | C5 | C4 | 0.2° | 0.0° |
| N1 | C6 | C5 | N6 | 179.7° | 180.0° |
| N1 | C6 | C5 | N7 | 180.0° | 179.9° |
| C6 | N1 | C2 | H2 | 179.7° | 180.0° |
| N1 | C6 | N6 | HN6 | 0.0° | 0.1° |
| N1 | C6 | N6 | HN6A | 120.0° | 180.0° |
| C2 | N3 | C4 | C5 | 0.0° | 0.0° |
| C2 | N3 | C4 | N9 | 179.8° | 179.9° |
| N3 | C4 | C5 | N9 | 179.8° | 179.9° |
| N3 | C4 | C5 | C6 | 0.0° | 0.0° |
| N3 | C4 | C5 | N7 | 179.9° | 179.9° |
| N3 | C4 | N9 | C8 | 179.9° | 179.9° |
| N3 | C4 | N9 | C1' | 0.1° | 0.1° |
| C4 | N3 | C2 | H2 | 179.9° | 180.0° |
| C4 | C5 | C6 | N7 | 179.8° | 179.9° |
| C4 | C5 | C6 | N6 | 179.9° | 180.0° |
| C4 | C5 | N7 | C8 | 0.1° | 0.0° |
| C5 | C4 | N9 | C8 | 0.3° | 0.0° |
| C5 | C4 | N9 | C1' | 179.9° | 180.0° |
| N9 | C4 | C5 | C6 | 179.9° | 179.9° |
| N9 | C4 | C5 | N7 | 0.3° | 0.0° |
| C4 | N9 | C8 | N7 | 0.2° | 0.0° |
| C4 | N9 | C8 | C1' | 179.7° | 180.0° |
| C4 | N9 | C1' | C2' | 118.7° | 120.0° |
| C4 | N9 | C1' | C5' | 119.8° | 124.8° |
| C4 | N9 | C8 | H8 | 179.8° | 179.9° |
| C4 | N9 | C1' | H1' | 0.8° | 2.3° |
| C6 | C5 | N7 | C8 | 179.9° | 179.9° |
| C5 | C6 | N6 | HN6 | 179.7° | 179.9° |
| C5 | C6 | N6 | HN6A | 60.4° | 0.0° |
| N7 | C5 | C6 | N6 | 0.3° | 0.1° |
| C5 | N7 | C8 | N9 | 0.1° | 0.0° |
| C5 | N7 | C8 | H8 | 180.0° | 179.9° |
| C6 | N6 | HN6 | HN6A | 120.0° | 179.9° |
| N7 | C8 | N9 | H8 | 180.0° | 179.9° |
| N7 | C8 | N9 | C1' | 179.9° | 180.0° |
| C8 | N9 | C1' | C2' | 61.7° | 60.0° |
| C8 | N9 | C1' | C5' | 59.9° | 55.2° |
| C8 | N9 | C1' | H1' | 179.5° | 177.7° |
| N9 | C1' | C2' | C5' | 127.1° | 118.8° |
| N9 | C1' | C2' | H1' | 111.0° | 122.3° |
| N9 | C1' | C5' | H1' | 111.4° | 122.3° |
| N9 | C1' | C2' | O2' | 95.1° | 122.6° |
| N9 | C1' | C2' | C3' | 129.7° | 118.8° |
| N9 | C1' | C5' | C4' | 131.7° | 118.8° |
| C1' | N9 | C8 | H8 | 0.1° | 0.1° |
| N9 | C1' | C2' | H2' | 12.9° | 0.0° |
| C2' | C1' | C5' | H1' | 119.5° | 118.9° |
| C1' | C2' | O2' | C3' | 126.0° | 114.5° |
| C1' | C2' | O2' | H2' | 121.1° | 122.7° |
| C1' | C2' | C3' | H2' | 123.1° | 118.7° |
| C1' | C2' | C3' | O3' | 178.6° | 179.9° |
| C1' | C2' | C3' | C4' | 2.1° | 0.0° |
| C2' | C1' | C5' | C4' | 2.6° | 0.0° |
| C1' | C2' | O2' | HO2' | 180.0° | 180.0° |
| C5' | C1' | C2' | O2' | 137.8° | 118.6° |
| C5' | C1' | C2' | C3' | 2.6° | 0.0° |
| C1' | C5' | C4' | C3' | 1.3° | 0.1° |
| C5' | C1' | C2' | H2' | 114.2° | 118.8° |
| O2' | C2' | C3' | H2' | 106.2° | 122.7° |
| O2' | C2' | C3' | O3' | 48.0° | 61.3° |
| O2' | C2' | C3' | C4' | 132.8° | 118.6° |
| O2' | C2' | C1' | H1' | 15.9° | 0.3° |
| C2' | C3' | O3' | C4' | 179.2° | 179.9° |
| C2' | C3' | C4' | C5' | 0.6° | 0.1° |
| C3' | C2' | C1' | H1' | 119.3° | 118.9° |
| C3' | C2' | O2' | HO2' | 54.0° | 65.5° |
| O3' | C3' | C4' | C5' | 179.9° | 180.0° |
| O3' | C3' | C2' | H2' | 58.2° | 61.4° |
| C3' | C4' | C1 | H1 | 119.3° | 60.0° |
| C3' | C4' | C1 | H1A | 0.7° | 60.0° |
| C4' | C3' | C2' | H2' | 121.0° | 118.7° |
| C5' | C4' | C1 | H1 | 60.8° | 119.9° |
| C5' | C4' | C1 | H1A | 179.3° | 120.0° |
| C4' | C5' | C1' | H1' | 116.9° | 118.8° |
| H1 | C1 | O1 | HO1 | 60.1° | 60.1° |
| H1A | C1 | O1 | HO1 | 60.0° | 60.0° |
| H1' | C1' | C2' | H2' | 123.9° | 122.3° |
| H2' | C2' | O2' | HO2' | 58.9° | 57.3° |
