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Summary Geometry Related PDB entries

7YO

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
O1	C1	doub	1.21Å	1.20Å
C1	C2	sing	1.52Å	1.46Å
C1	N1	sing	1.34Å	1.31Å
C2	C3	sing	1.55Å	1.50Å
N1	C4	sing	1.47Å	1.45Å
C3	C4	sing	1.54Å	1.50Å
C4	C5	sing	1.51Å	1.49Å
C5	O2	doub	1.21Å	1.19Å
C4	H23	sing	1.09Å	1.10Å
N1	H24	sing	0.97Å	1.00Å
C3	H25	sing	1.09Å	1.10Å
C3	H26	sing	1.09Å	1.10Å
C2	H27	sing	1.09Å	1.10Å
C2	H28	sing	1.09Å	1.10Å
C5	OXT	sing	1.34Å	1.29Å
OXT	HXT	sing	0.97Å	0.95Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
O1	C1	C2	121.4°	124.9°
O1	C1	N1	128.8°	125.0°
C2	C1	N1	109.8°	110.1°
C1	C2	C3	101.2°	104.2°
C1	C2	H27	111.5°	110.4°
C1	C2	H28	111.5°	110.7°
C1	N1	C4	115.1°	111.3°
C1	N1	H24	122.5°	124.3°
C2	C3	C4	107.9°	101.8°
C2	C3	H25	109.9°	110.9°
C2	C3	H26	109.9°	111.0°
C3	C2	H27	111.5°	110.4°
C3	C2	H28	111.5°	110.5°
N1	C4	C3	100.0°	105.5°
N1	C4	C5	117.2°	110.3°
N1	C4	H23	111.9°	110.3°
C4	N1	H24	122.5°	124.3°
C3	C4	C5	104.7°	110.2°
C3	C4	H23	111.1°	110.3°
C4	C3	H25	109.9°	111.0°
C4	C3	H26	109.8°	111.0°
C4	C5	O2	120.3°	120.0°
C5	C4	H23	111.2°	110.2°
C4	C5	OXT	118.7°	120.0°
O2	C5	OXT	120.9°	120.0°
H25	C3	H26	109.5°	110.8°
H27	C2	H28	109.5°	110.4°
C5	OXT	HXT	109.5°	116.9°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
O1	C1	C2	N1	179.3°	179.9°
O1	C1	C2	C3	158.8°	163.7°
O1	C1	N1	C4	170.3°	179.7°
O1	C1	N1	H24	9.7°	0.2°
O1	C1	C2	H27	82.6°	77.8°
O1	C1	C2	H28	40.1°	44.9°
C1	C2	C3	H27	118.7°	118.6°
C1	C2	C3	H28	118.7°	118.9°
C2	C1	N1	C4	8.9°	0.5°
C1	C2	C3	C4	24.7°	24.7°
C2	C1	N1	H24	171.1°	179.7°
C1	C2	C3	H25	144.4°	142.9°
C1	C2	C3	H26	95.1°	93.5°
C1	C2	H27	H28	123.8°	122.8°
N1	C1	C2	C3	20.5°	16.2°
C1	N1	C4	H24	180.0°	179.9°
C1	N1	C4	C3	7.0°	17.0°
C1	N1	C4	C5	105.3°	136.0°
C1	N1	C4	H23	124.6°	102.1°
N1	C1	C2	H27	98.1°	102.4°
N1	C1	C2	H28	139.2°	135.0°
C2	C3	C4	N1	19.7°	25.4°
C2	C3	C4	H25	119.8°	118.1°
C2	C3	C4	H26	119.7°	118.2°
C2	C3	C4	C5	102.0°	144.4°
C2	C3	C4	H23	137.9°	93.7°
C2	C3	H25	H26	120.7°	123.8°
C3	C2	H27	H28	123.8°	122.6°
N1	C4	C3	C5	121.7°	119.0°
N1	C4	C3	H23	118.2°	119.1°
N1	C4	C5	H23	130.4°	122.0°
N1	C4	C5	O2	62.3°	17.3°
N1	C4	C3	H25	139.5°	143.5°
N1	C4	C3	H26	100.0°	92.8°
N1	C4	C5	OXT	117.9°	162.3°
C3	C4	C5	H23	120.0°	121.9°
C3	C4	C5	O2	47.4°	98.8°
C3	C4	N1	H24	173.0°	163.1°
C4	C3	H25	H26	120.7°	123.8°
C4	C3	C2	H27	94.0°	93.9°
C4	C3	C2	H28	143.3°	143.6°
C3	C4	C5	OXT	132.5°	81.5°
C4	C5	O2	OXT	179.9°	179.7°
C5	C4	N1	H24	74.7°	44.1°
C5	C4	C3	H25	17.8°	97.5°
C5	C4	C3	H26	138.3°	26.3°
C4	C5	OXT	HXT	179.9°	179.7°
O2	C5	C4	H23	167.4°	139.3°
O2	C5	OXT	HXT	0.0°	0.1°
H23	C4	N1	H24	55.3°	77.8°
H23	C4	C3	H25	102.3°	24.4°
H23	C4	C3	H26	18.2°	148.1°
H23	C4	C5	OXT	12.5°	40.4°
H25	C3	C2	H27	25.8°	24.3°
H25	C3	C2	H28	96.9°	98.2°
H26	C3	C2	H27	146.3°	148.0°
H26	C3	C2	H28	23.6°	25.5°

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