6YH
Bonds
First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
N17 | C16 | doub | 1.30Å | 1.37Å | Aromatic |
N17 | C19 | sing | 1.36Å | 1.35Å | Aromatic |
C16 | N14 | sing | 1.36Å | 1.34Å | Aromatic |
C19 | C23 | doub | 1.40Å | 1.41Å | Aromatic |
C19 | C18 | sing | 1.41Å | 1.36Å | Aromatic |
N14 | C18 | sing | 1.38Å | 1.37Å | Aromatic |
N14 | C13 | sing | 1.46Å | 1.48Å | |
C23 | C22 | sing | 1.37Å | 1.38Å | Aromatic |
O12 | C11 | doub | 1.21Å | 1.23Å | |
C18 | C20 | doub | 1.39Å | 1.34Å | Aromatic |
C13 | C11 | sing | 1.51Å | 1.50Å | |
C11 | C4 | sing | 1.47Å | 1.48Å | |
C22 | C21 | doub | 1.39Å | 1.39Å | Aromatic |
C4 | C3 | doub | 1.40Å | 1.39Å | Aromatic |
C4 | C5 | sing | 1.40Å | 1.40Å | Aromatic |
C20 | C21 | sing | 1.38Å | 1.39Å | Aromatic |
C3 | C2 | sing | 1.38Å | 1.40Å | Aromatic |
C5 | C6 | doub | 1.38Å | 1.38Å | Aromatic |
C2 | C1 | doub | 1.38Å | 1.38Å | Aromatic |
C6 | C1 | sing | 1.38Å | 1.40Å | Aromatic |
C1 | S7 | sing | 1.76Å | 1.77Å | |
N10 | S7 | sing | 1.66Å | 1.60Å | |
O8 | S7 | doub | 1.42Å | 1.41Å | |
S7 | O9 | doub | 1.42Å | 1.46Å | |
C3 | H1 | sing | 1.08Å | 1.08Å | |
C2 | H2 | sing | 1.08Å | 1.08Å | |
C5 | H3 | sing | 1.08Å | 1.08Å | |
C6 | H4 | sing | 1.08Å | 1.08Å | |
N10 | H5 | sing | 0.97Å | 1.00Å | |
N10 | H6 | sing | 0.97Å | 1.00Å | |
C13 | H7 | sing | 1.09Å | 1.10Å | |
C13 | H8 | sing | 1.09Å | 1.10Å | |
C20 | H9 | sing | 1.08Å | 1.08Å | |
C21 | H10 | sing | 1.08Å | 1.08Å | |
C22 | H11 | sing | 1.08Å | 1.08Å | |
C23 | H12 | sing | 1.08Å | 1.08Å | |
C16 | H13 | sing | 1.08Å | 1.08Å |
Angles
First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
C16 | N17 | C19 | 105.0° | 109.6° |
N17 | C16 | N14 | 111.2° | 110.1° |
N17 | C16 | H13 | 124.4° | 124.9° |
N17 | C19 | C23 | 128.9° | 133.6° |
N17 | C19 | C18 | 109.1° | 106.9° |
C16 | N14 | C18 | 105.4° | 107.3° |
C16 | N14 | C13 | 132.0° | 126.3° |
N14 | C16 | H13 | 124.4° | 125.0° |
C23 | C19 | C18 | 122.0° | 119.4° |
C19 | C23 | C22 | 116.1° | 119.9° |
C19 | C23 | H12 | 121.9° | 120.1° |
C19 | C18 | N14 | 108.6° | 106.0° |
C19 | C18 | C20 | 121.3° | 119.8° |
C18 | N14 | C13 | 122.1° | 126.3° |
N14 | C18 | C20 | 130.0° | 134.1° |
N14 | C13 | C11 | 107.3° | 109.5° |
N14 | C13 | H7 | 110.0° | 109.5° |
N14 | C13 | H8 | 110.0° | 109.5° |
C23 | C22 | C21 | 120.9° | 120.6° |
C23 | C22 | H11 | 119.5° | 119.7° |
C22 | C23 | H12 | 122.0° | 120.0° |
O12 | C11 | C13 | 123.1° | 120.0° |
O12 | C11 | C4 | 121.0° | 120.0° |
C18 | C20 | C21 | 118.9° | 119.7° |
C18 | C20 | H9 | 120.6° | 120.1° |
C13 | C11 | C4 | 114.0° | 120.0° |
C11 | C13 | H7 | 110.0° | 109.5° |
C11 | C13 | H8 | 110.0° | 109.5° |
C11 | C4 | C3 | 117.3° | 120.2° |
C11 | C4 | C5 | 121.8° | 120.2° |
C22 | C21 | C20 | 120.7° | 120.5° |
C22 | C21 | H10 | 119.6° | 119.7° |
C21 | C22 | H11 | 119.5° | 119.7° |
C3 | C4 | C5 | 120.8° | 119.7° |
C4 | C3 | C2 | 117.2° | 119.8° |
C4 | C3 | H1 | 121.4° | 120.0° |
C4 | C5 | C6 | 121.3° | 119.9° |
C4 | C5 | H3 | 119.4° | 120.1° |
C21 | C20 | H9 | 120.6° | 120.2° |
C20 | C21 | H10 | 119.6° | 119.8° |
C3 | C2 | C1 | 122.2° | 120.2° |
C2 | C3 | H1 | 121.4° | 120.2° |
C3 | C2 | H2 | 118.9° | 119.9° |
C5 | C6 | C1 | 118.6° | 120.1° |
C6 | C5 | H3 | 119.3° | 120.0° |
C5 | C6 | H4 | 120.7° | 119.9° |
C2 | C1 | C6 | 119.7° | 120.3° |
C2 | C1 | S7 | 120.5° | 119.9° |
C1 | C2 | H2 | 118.9° | 119.9° |
C6 | C1 | S7 | 119.7° | 119.8° |
C1 | C6 | H4 | 120.7° | 119.9° |
C1 | S7 | N10 | 107.5° | 107.2° |
C1 | S7 | O8 | 106.5° | 106.4° |
C1 | S7 | O9 | 104.1° | 106.4° |
N10 | S7 | O8 | 110.4° | 106.4° |
N10 | S7 | O9 | 110.0° | 106.4° |
S7 | N10 | H5 | 109.5° | 120.0° |
S7 | N10 | H6 | 109.5° | 120.0° |
O8 | S7 | O9 | 117.7° | 123.2° |
H5 | N10 | H6 | 109.5° | 120.0° |
H7 | C13 | H8 | 109.5° | 109.5° |
Dihedrals
First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
N17 | C16 | N14 | H13 | 180.0° | 179.6° |
C16 | N17 | C19 | C23 | 175.8° | 179.8° |
C16 | N17 | C19 | C18 | 2.8° | 0.2° |
N17 | C16 | N14 | C18 | 7.7° | 0.4° |
N17 | C16 | N14 | C13 | 179.6° | 179.9° |
C19 | N17 | C16 | N14 | 6.6° | 0.4° |
N17 | C19 | C23 | C18 | 178.5° | 179.9° |
N17 | C19 | C18 | N14 | 1.8° | 0.1° |
N17 | C19 | C23 | C22 | 180.0° | 179.9° |
N17 | C19 | C18 | C20 | 178.9° | 180.0° |
N17 | C19 | C23 | H12 | 0.0° | 0.1° |
C19 | N17 | C16 | H13 | 173.4° | 180.0° |
C16 | N14 | C18 | C19 | 5.7° | 0.3° |
C16 | N14 | C18 | C13 | 172.9° | 179.7° |
C16 | N14 | C18 | C20 | 177.5° | 179.8° |
C16 | N14 | C13 | C11 | 80.8° | 95.3° |
C16 | N14 | C13 | H7 | 38.8° | 144.7° |
C16 | N14 | C13 | H8 | 159.5° | 24.6° |
C23 | C19 | C18 | N14 | 179.5° | 180.0° |
C19 | C23 | C22 | H12 | 180.0° | 180.0° |
C23 | C19 | C18 | C20 | 2.3° | 0.1° |
C19 | C23 | C22 | C21 | 1.5° | 0.1° |
C19 | C23 | C22 | H11 | 178.5° | 179.9° |
C19 | C18 | N14 | C20 | 176.8° | 179.9° |
C19 | C18 | N14 | C13 | 178.6° | 180.0° |
C18 | C19 | C23 | C22 | 1.5° | 0.0° |
C19 | C18 | C20 | C21 | 0.1° | 0.1° |
C19 | C18 | C20 | H9 | 179.9° | 179.9° |
C18 | C19 | C23 | H12 | 178.5° | 180.0° |
C18 | N14 | C13 | C11 | 90.0° | 85.1° |
N14 | C18 | C20 | C21 | 176.6° | 180.0° |
C18 | N14 | C13 | H7 | 150.4° | 34.9° |
C18 | N14 | C13 | H8 | 29.7° | 154.9° |
N14 | C18 | C20 | H9 | 3.4° | 0.1° |
C18 | N14 | C16 | H13 | 172.3° | 180.0° |
N14 | C13 | C11 | O12 | 10.3° | 0.0° |
C13 | N14 | C18 | C20 | 4.6° | 0.1° |
N14 | C13 | C11 | H7 | 119.6° | 120.0° |
N14 | C13 | C11 | H8 | 119.6° | 120.0° |
N14 | C13 | C11 | C4 | 175.1° | 179.7° |
N14 | C13 | H7 | H8 | 121.0° | 120.0° |
C13 | N14 | C16 | H13 | 0.4° | 0.3° |
C23 | C22 | C21 | H11 | 180.0° | 179.8° |
C23 | C22 | C21 | C20 | 3.7° | 0.0° |
C23 | C22 | C21 | H10 | 176.3° | 179.9° |
O12 | C11 | C13 | C4 | 164.8° | 179.7° |
O12 | C11 | C4 | C3 | 2.4° | 0.0° |
O12 | C11 | C4 | C5 | 173.6° | 179.8° |
O12 | C11 | C13 | H7 | 129.9° | 120.0° |
O12 | C11 | C13 | H8 | 109.4° | 120.0° |
C18 | C20 | C21 | C22 | 2.8° | 0.1° |
C18 | C20 | C21 | H9 | 180.0° | 179.9° |
C18 | C20 | C21 | H10 | 177.2° | 180.0° |
C13 | C11 | C4 | C3 | 167.6° | 179.8° |
C13 | C11 | C4 | C5 | 8.4° | 0.0° |
C11 | C13 | H7 | H8 | 121.0° | 120.0° |
C11 | C4 | C3 | C5 | 176.1° | 179.8° |
C11 | C4 | C3 | C2 | 178.1° | 180.0° |
C11 | C4 | C5 | C6 | 178.3° | 180.0° |
C11 | C4 | C3 | H1 | 1.9° | 0.1° |
C11 | C4 | C5 | H3 | 1.7° | 0.1° |
C4 | C11 | C13 | H7 | 65.3° | 60.3° |
C4 | C11 | C13 | H8 | 55.5° | 59.7° |
C22 | C21 | C20 | H10 | 180.0° | 180.0° |
C22 | C21 | C20 | H9 | 177.2° | 180.0° |
C21 | C22 | C23 | H12 | 178.5° | 180.0° |
C4 | C3 | C2 | H1 | 180.0° | 179.9° |
C3 | C4 | C5 | C6 | 2.4° | 0.2° |
C4 | C3 | C2 | C1 | 2.1° | 0.1° |
C4 | C3 | C2 | H2 | 177.9° | 180.0° |
C3 | C4 | C5 | H3 | 177.6° | 179.7° |
C5 | C4 | C3 | C2 | 2.1° | 0.2° |
C4 | C5 | C6 | H3 | 180.0° | 180.0° |
C4 | C5 | C6 | C1 | 1.4° | 0.0° |
C5 | C4 | C3 | H1 | 177.9° | 179.7° |
C4 | C5 | C6 | H4 | 178.6° | 180.0° |
C20 | C21 | C22 | H11 | 176.3° | 179.9° |
C3 | C2 | C1 | H2 | 180.0° | 179.9° |
C3 | C2 | C1 | C6 | 6.0° | 0.4° |
C3 | C2 | C1 | S7 | 177.8° | 179.9° |
C5 | C6 | C1 | C2 | 5.5° | 0.3° |
C5 | C6 | C1 | H4 | 180.0° | 180.0° |
C5 | C6 | C1 | S7 | 178.3° | 180.0° |
C2 | C1 | C6 | S7 | 176.2° | 179.7° |
C2 | C1 | S7 | N10 | 136.4° | 90.0° |
C2 | C1 | S7 | O8 | 18.1° | 156.5° |
C2 | C1 | S7 | O9 | 107.0° | 23.5° |
C1 | C2 | C3 | H1 | 177.9° | 180.0° |
C2 | C1 | C6 | H4 | 174.5° | 179.7° |
C6 | C1 | S7 | N10 | 47.4° | 89.7° |
C6 | C1 | S7 | O8 | 165.7° | 23.8° |
C6 | C1 | S7 | O9 | 69.2° | 156.8° |
C6 | C1 | C2 | H2 | 174.0° | 179.7° |
C1 | C6 | C5 | H3 | 178.6° | 180.0° |
C1 | S7 | N10 | O8 | 115.8° | 113.5° |
C1 | S7 | N10 | O9 | 112.7° | 113.5° |
C1 | S7 | O8 | O9 | 116.3° | 123.0° |
S7 | C1 | C2 | H2 | 2.2° | 0.0° |
S7 | C1 | C6 | H4 | 1.7° | 0.0° |
C1 | S7 | N10 | H5 | 180.0° | 150.0° |
C1 | S7 | N10 | H6 | 60.0° | 30.0° |
N10 | S7 | O8 | O9 | 127.3° | 122.9° |
S7 | N10 | H5 | H6 | 120.0° | 179.9° |
O8 | S7 | N10 | H5 | 64.2° | 36.4° |
O8 | S7 | N10 | H6 | 55.8° | 143.5° |
O9 | S7 | N10 | H5 | 67.3° | 96.5° |
O9 | S7 | N10 | H6 | 172.7° | 83.6° |
H1 | C3 | C2 | H2 | 2.1° | 0.1° |
H3 | C5 | C6 | H4 | 1.4° | 0.0° |
H9 | C20 | C21 | H10 | 2.8° | 0.0° |
H10 | C21 | C22 | H11 | 3.7° | 0.1° |
H11 | C22 | C23 | H12 | 1.5° | 0.1° |