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SummaryGeometryRelated PDB entries

6MI

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
PO1Pdoub1.50Å1.48Å
PO2Psing1.62Å1.48Å
PO3Psing1.62Å201.31Å
PO5'sing1.62Å1.58Å
O2PHOP2sing0.98Å0.95Å
O3PHOP3sing0.98Å0.95Å
O5'C5'sing1.42Å1.43Å
N1MC2Msing1.39Å1.42Å
N1MC8Asing1.39Å1.43Å
N1MC1'sing1.43Å1.46Å
C2MO2Mdoub1.22Å1.24Å
C2MC3Msing1.51Å1.41Å
C3MN4Mdoub1.29Å1.42Å
C3MC3Ising1.50Å1.50Å
N4MC4Asing1.37Å1.41Å
C4AC8Adoub1.35Å1.42Å
C4AC5Msing1.51Å1.40Å
C8AN8Msing1.38Å1.41Å
N8MC7Msing1.37Å1.42Å
N8MH8Msing1.01Å1.02Å
C7MN7Msing1.37Å1.33Å
C7MN6Mdoub1.30Å1.41Å
N7MH7M1sing0.99Å1.02Å
N7MH7M2sing0.99Å1.02Å
N6MC5Msing1.38Å1.42Å
C5MO5Mdoub1.23Å1.24Å
C3IH3I1sing1.09Å1.11Å
C3IH3I2sing1.09Å1.12Å
C3IH3I3sing1.09Å1.12Å
C2'C1'sing1.52Å1.53Å
C2'C3'sing1.51Å1.53Å
C2'H2'1sing1.10Å1.11Å
C2'H2'2sing1.09Å1.11Å
C5'C4'sing1.52Å1.51Å
C5'H5'1sing1.09Å1.12Å
C5'H5'2sing1.09Å1.12Å
C4'O4'sing1.44Å1.43Å
C4'C3'sing1.52Å1.53Å
C4'H4'sing1.10Å1.12Å
O4'C1'sing1.44Å1.40Å
C1'H1'sing1.09Å1.11Å
C3'O3'sing1.41Å1.45Å
C3'H3'sing1.10Å1.12Å
O3'H3Tsing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
O1PPO2P125.3°115.3°
O1PPO3P121.3°115.0°
O1PPO5'115.9°115.0°
O2PPO3P56.9°103.3°
O2PPO5'116.9°103.7°
PO2PHOP2125.3°119.0°
O3PPO5'80.6°102.9°
PO3PHOP3121.3°118.9°
PO5'C5'121.4°118.5°
O5'C5'C4'107.1°108.7°
O5'C5'H5'1113.1°109.2°
O5'C5'H5'2113.1°109.2°
C2MN1MC8A121.6°121.2°
C2MN1MC1'127.7°119.4°
N1MC2MO2M120.1°127.4°
N1MC2MC3M119.8°114.9°
C8AN1MC1'110.7°119.4°
N1MC8AC4A118.1°118.0°
N1MC8AN8M122.9°123.7°
N1MC1'C2'128.5°112.7°
N1MC1'O4'119.1°109.5°
N1MC1'H1'71.4°107.9°
O2MC2MC3M120.1°117.7°
C2MC3MN4M118.8°122.7°
C2MC3MC3I120.8°117.3°
N4MC3MC3I120.4°119.9°
C3MN4MC4A121.8°117.8°
C3MC3IH3I1120.8°109.4°
C3MC3IH3I2108.2°109.4°
C3MC3IH3I3108.2°109.3°
N4MC4AC8A119.9°125.4°
N4MC4AC5M120.5°115.7°
C8AC4AC5M119.5°118.9°
C4AC8AN8M118.9°118.3°
C4AC5MN6M121.2°118.2°
C4AC5MO5M121.1°119.2°
C8AN8MC7M121.5°121.9°
C8AN8MH8M107.9°117.5°
C7MN8MH8M107.9°120.6°
N8MC7MN7M120.3°113.8°
N8MC7MN6M119.0°123.3°
N7MC7MN6M120.7°122.9°
C7MN7MH7M1120.3°118.3°
C7MN7MH7M2108.3°118.3°
C7MN6MC5M119.8°119.4°
H7M1N7MH7M2108.3°123.4°
N6MC5MO5M117.7°122.5°
H3I1C3IH3I2108.2°109.7°
H3I1C3IH3I3108.2°109.7°
H3I2C3IH3I3101.7°109.3°
C1'C2'C3'101.3°101.8°
C1'C2'H2'1115.4°111.9°
C1'C2'H2'2115.3°112.8°
C2'C1'O4'109.5°107.1°
C2'C1'H1'97.3°111.6°
C3'C2'H2'1115.3°110.5°
C3'C2'H2'2115.3°113.2°
C2'C3'C4'103.8°101.3°
C2'C3'O3'127.3°112.3°
C2'C3'H3'131.6°110.5°
H2'1C2'H2'295.1°106.8°
C4'C5'H5'1113.1°110.1°
C4'C5'H5'2113.1°110.1°
C5'C4'O4'121.8°109.8°
C5'C4'C3'128.9°113.4°
C5'C4'H4'42.0°108.5°
H5'1C5'H5'297.4°109.6°
O4'C4'C3'108.8°105.8°
O4'C4'H4'135.9°107.9°
C4'O4'C1'101.9°108.4°
C3'C4'H4'103.6°111.3°
C4'C3'O3'128.9°111.6°
C4'C3'H3'124.6°111.7°
O4'C1'H1'122.0°108.0°
O3'C3'H3'4.4°109.3°
C3'O3'H3T127.3°106.6°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
O1PPO2PO3P107.3°126.3°
O1PPO2PO5'164.0°126.7°
O1PPO3PO5'114.7°125.8°
O1PPO2PHOP2180.0°48.7°
O1PPO3PHOP3180.0°48.0°
O1PPO5'C5'179.3°180.0°
O2PPO3PO5'131.0°107.7°
O2PPO3PHOP365.7°78.5°
O2PPO5'C5'13.7°53.1°
O3PPO2PHOP272.7°77.5°
O3PPO5'C5'59.0°54.3°
O5'PO2PHOP216.0°175.4°
O5'PO3PHOP365.3°173.8°
PO5'C5'C4'178.4°180.0°
PO5'C5'H5'156.3°59.9°
PO5'C5'H5'253.1°59.9°
O5'C5'C4'H5'1125.2°119.5°
O5'C5'C4'H5'2125.3°119.5°
O5'C5'H5'1H5'2119.0°119.5°
O5'C5'C4'O4'81.3°62.3°
O5'C5'C4'C3'90.3°179.6°
O5'C5'C4'H4'153.8°55.4°
C2MN1MC8AC1'179.8°179.9°
N1MC2MO2MC3M179.9°180.0°
N1MC2MC3MN4M0.0°0.0°
N1MC2MC3MC3I178.8°179.9°
C2MN1MC8AC4A0.1°0.1°
C2MN1MC8AN8M179.9°179.9°
C2MN1MC1'C2'58.6°86.2°
C2MN1MC1'O4'100.0°32.8°
C2MN1MC1'H1'143.1°150.1°
C8AN1MC2MO2M179.8°179.9°
C8AN1MC2MC3M0.1°0.1°
N1MC8AC4AN4M0.1°0.0°
N1MC8AC4AN8M180.0°179.9°
N1MC8AC4AC5M179.9°180.0°
N1MC8AN8MC7M180.0°180.0°
N1MC8AN8MH8M54.7°0.0°
C8AN1MC1'C2'121.6°93.7°
C8AN1MC1'O4'79.8°147.3°
C8AN1MC1'H1'37.1°30.0°
C1'N1MC2MO2M0.0°0.0°
C1'N1MC2MC3M179.9°180.0°
C1'N1MC8AC4A179.9°179.9°
C1'N1MC8AN8M0.1°0.0°
N1MC1'C2'O4'160.2°120.4°
N1MC1'C2'H1'72.0°121.6°
N1MC1'C2'C3'130.9°149.1°
N1MC1'C2'H2'1103.9°31.1°
N1MC1'C2'H2'25.6°89.3°
N1MC1'O4'C4'122.9°129.0°
N1MC1'O4'H1'85.2°117.3°
O2MC2MC3MN4M179.8°180.0°
O2MC2MC3MC3I1.4°0.1°
C2MC3MN4MC3I178.8°179.9°
C2MC3MN4MC4A0.0°0.1°
C2MC3MC3IH3I1180.0°91.0°
C2MC3MC3IH3I254.7°29.2°
C2MC3MC3IH3I354.7°148.8°
C3MN4MC4AC8A0.0°0.1°
C3MN4MC4AC5M179.9°179.9°
N4MC3MC3IH3I11.2°89.1°
N4MC3MC3IH3I2126.6°150.7°
N4MC3MC3IH3I3124.1°31.1°
C3IC3MN4MC4A178.8°180.0°
C3MC3IH3I1H3I2125.3°120.0°
C3MC3IH3I1H3I3125.3°119.9°
C3MC3IH3I2H3I3113.8°119.6°
N4MC4AC8AC5M179.9°180.0°
N4MC4AC8AN8M179.9°180.0°
N4MC4AC5MN6M180.0°179.9°
N4MC4AC5MO5M0.1°0.0°
C4AC8AN8MC7M0.0°0.1°
C4AC8AN8MH8M125.3°180.0°
C8AC4AC5MN6M0.1°0.0°
C8AC4AC5MO5M180.0°179.9°
C5MC4AC8AN8M0.1°0.0°
C4AC5MN6MC7M0.1°0.1°
C4AC5MN6MO5M179.9°179.9°
C8AN8MC7MH8M125.3°180.0°
C8AN8MC7MN7M180.0°180.0°
C8AN8MC7MN6M0.0°0.0°
N8MC7MN7MN6M180.0°180.0°
N8MC7MN7MH7M1180.0°17.3°
N8MC7MN7MH7M254.7°162.7°
N8MC7MN6MC5M0.1°0.0°
H8MN8MC7MN7M54.7°0.0°
H8MN8MC7MN6M125.3°180.0°
C7MN7MH7M1H7M2125.3°180.0°
N7MC7MN6MC5M179.9°179.9°
N6MC7MN7MH7M10.0°162.6°
N6MC7MN7MH7M2125.3°17.4°
C7MN6MC5MO5M180.0°180.0°
H3I1C3IH3I2H3I3113.8°120.4°
C1'C2'C3'H2'1125.3°119.0°
C1'C2'C3'H2'2125.3°121.3°
C1'C2'H2'1H2'2121.2°123.9°
C2'C1'O4'C4'39.4°6.5°
C1'C2'C3'C4'7.1°38.2°
C2'C1'O4'H1'112.4°120.3°
C1'C2'C3'O3'172.8°157.4°
C1'C2'C3'H3'173.4°80.3°
C3'C2'H2'1H2'2121.1°123.5°
C2'C3'C4'C5'156.5°156.2°
C2'C3'C4'O4'15.9°35.8°
C2'C3'C4'O3'179.9°119.7°
C2'C3'C4'H3'179.5°117.7°
C2'C3'C4'H4'165.5°81.1°
C3'C2'C1'O4'29.3°28.7°
C3'C2'C1'H1'157.1°89.3°
C2'C3'O3'H3'173.4°123.1°
C2'C3'O3'H3T180.0°29.3°
H2'1C2'C3'C4'118.2°80.8°
H2'1C2'C1'O4'95.9°89.3°
H2'1C2'C1'H1'31.9°152.7°
H2'1C2'C3'O3'62.0°38.4°
H2'1C2'C3'H3'61.3°160.8°
H2'2C2'C3'C4'132.4°159.6°
H2'2C2'C1'O4'154.6°150.3°
H2'2C2'C1'H1'77.6°32.3°
H2'2C2'C3'O3'47.5°81.3°
H2'2C2'C3'H3'48.2°41.1°
C4'C5'H5'1H5'2119.0°121.3°
C5'C4'O4'C3'173.0°122.7°
C5'C4'O4'H4'51.9°118.1°
C5'C4'C3'H4'38.0°122.7°
C5'C4'O4'C1'139.3°141.2°
C5'C4'C3'O3'23.3°84.1°
C5'C4'C3'H3'24.0°38.5°
H5'1C5'C4'O4'153.5°178.1°
H5'1C5'C4'C3'35.0°60.0°
H5'1C5'C4'H4'28.6°64.1°
H5'2C5'C4'O4'44.0°57.2°
H5'2C5'C4'C3'144.4°60.9°
H5'2C5'C4'H4'80.9°174.9°
O4'C4'C3'H4'149.6°116.9°
C4'O4'C1'H1'151.9°113.7°
O4'C4'C3'O3'164.3°155.5°
O4'C4'C3'H3'163.6°81.8°
C3'C4'O4'C1'33.7°18.5°
C4'C3'O3'H3'6.7°124.0°
C4'C3'O3'H3T0.1°83.7°
H4'C4'O4'C1'168.8°100.7°
H4'C4'C3'O3'14.7°38.6°
H4'C4'C3'H3'14.0°161.2°
H3'C3'O3'H3T6.6°152.3°

226262

PDB entries from 2024-10-16

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