5Y9
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C03 | N02 | sing | 1.46Å | 1.46Å | |
| C01 | N02 | sing | 1.46Å | 1.46Å | |
| N02 | C04 | sing | 1.35Å | 1.43Å | |
| C04 | O06 | doub | 1.21Å | 1.19Å | |
| C04 | C05 | sing | 1.51Å | 1.52Å | |
| C01 | H1 | sing | 1.09Å | 1.10Å | |
| C01 | H2 | sing | 1.09Å | 1.10Å | |
| C01 | H3 | sing | 1.09Å | 1.10Å | |
| C03 | H4 | sing | 1.09Å | 1.10Å | |
| C03 | H5 | sing | 1.09Å | 1.10Å | |
| C03 | H6 | sing | 1.09Å | 1.10Å | |
| C05 | H7 | sing | 1.09Å | 1.10Å | |
| C05 | H8 | sing | 1.09Å | 1.10Å | |
| C05 | H9 | sing | 1.09Å | 1.10Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C03 | N02 | C01 | 120.9° | 120.0° |
| C03 | N02 | C04 | 118.4° | 120.0° |
| N02 | C03 | H4 | 109.5° | 109.5° |
| N02 | C03 | H5 | 109.5° | 109.5° |
| N02 | C03 | H6 | 109.5° | 109.4° |
| C01 | N02 | C04 | 120.7° | 120.0° |
| N02 | C01 | H1 | 109.5° | 109.5° |
| N02 | C01 | H2 | 109.5° | 109.5° |
| N02 | C01 | H3 | 109.5° | 109.5° |
| N02 | C04 | O06 | 118.9° | 120.0° |
| N02 | C04 | C05 | 118.8° | 120.0° |
| O06 | C04 | C05 | 122.3° | 120.0° |
| C04 | C05 | H7 | 109.5° | 109.5° |
| C04 | C05 | H8 | 109.4° | 109.4° |
| C04 | C05 | H9 | 109.5° | 109.5° |
| H1 | C01 | H2 | 109.5° | 109.5° |
| H1 | C01 | H3 | 109.4° | 109.5° |
| H2 | C01 | H3 | 109.4° | 109.5° |
| H4 | C03 | H5 | 109.5° | 109.5° |
| H4 | C03 | H6 | 109.4° | 109.5° |
| H5 | C03 | H6 | 109.5° | 109.5° |
| H7 | C05 | H8 | 109.5° | 109.5° |
| H7 | C05 | H9 | 109.5° | 109.5° |
| H8 | C05 | H9 | 109.4° | 109.5° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C03 | N02 | C01 | C04 | 179.7° | 180.0° |
| C03 | N02 | C04 | O06 | 0.5° | 175.3° |
| C03 | N02 | C04 | C05 | 179.9° | 4.7° |
| C03 | N02 | C01 | H1 | 180.0° | 90.0° |
| C03 | N02 | C01 | H2 | 60.0° | 30.0° |
| C03 | N02 | C01 | H3 | 60.0° | 150.0° |
| N02 | C03 | H4 | H5 | 120.0° | 120.0° |
| N02 | C03 | H4 | H6 | 120.0° | 119.9° |
| N02 | C03 | H5 | H6 | 120.0° | 120.0° |
| C01 | N02 | C04 | O06 | 179.8° | 4.7° |
| C01 | N02 | C04 | C05 | 0.3° | 175.3° |
| N02 | C01 | H1 | H2 | 120.0° | 120.0° |
| N02 | C01 | H1 | H3 | 120.0° | 120.0° |
| N02 | C01 | H2 | H3 | 120.0° | 120.0° |
| C01 | N02 | C03 | H4 | 180.0° | 95.4° |
| C01 | N02 | C03 | H5 | 60.0° | 144.6° |
| C01 | N02 | C03 | H6 | 60.0° | 24.5° |
| N02 | C04 | O06 | C05 | 179.4° | 180.0° |
| C04 | N02 | C01 | H1 | 0.3° | 90.0° |
| C04 | N02 | C01 | H2 | 119.8° | 150.0° |
| C04 | N02 | C01 | H3 | 120.3° | 30.0° |
| C04 | N02 | C03 | H4 | 0.2° | 84.5° |
| C04 | N02 | C03 | H5 | 120.3° | 35.5° |
| C04 | N02 | C03 | H6 | 119.7° | 155.5° |
| N02 | C04 | C05 | H7 | 179.5° | 5.2° |
| N02 | C04 | C05 | H8 | 60.5° | 125.2° |
| N02 | C04 | C05 | H9 | 59.4° | 114.8° |
| O06 | C04 | C05 | H7 | 0.0° | 174.8° |
| O06 | C04 | C05 | H8 | 120.0° | 54.8° |
| O06 | C04 | C05 | H9 | 120.0° | 65.2° |
| C04 | C05 | H7 | H8 | 120.0° | 119.9° |
| C04 | C05 | H7 | H9 | 120.0° | 120.0° |
| C04 | C05 | H8 | H9 | 120.0° | 120.0° |
| H1 | C01 | H2 | H3 | 119.9° | 120.0° |
| H4 | C03 | H5 | H6 | 119.9° | 120.0° |
| H7 | C05 | H8 | H9 | 120.0° | 120.0° |
