Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5WD

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C17C16doub1.38Å1.41ÅAromatic
C17C18sing1.38Å1.41ÅAromatic
C16C15sing1.38Å1.41ÅAromatic
C18C19doub1.40Å1.41ÅAromatic
N11C10sing1.35Å1.35Å
C9C8doub1.36Å1.34ÅAromatic
C9C5sing1.42Å1.49ÅAromatic
C10C8sing1.47Å1.48Å
C10O12doub1.22Å1.22Å
C4C5doub1.40Å1.39ÅAromatic
C4C1sing1.38Å1.41ÅAromatic
C15C14sing1.51Å1.53Å
C15C20doub1.38Å1.41ÅAromatic
C8N7sing1.38Å1.32ÅAromatic
C5C6sing1.41Å1.38ÅAromatic
O13C1sing1.36Å1.42Å
O13C14sing1.43Å1.45Å
C1C2doub1.39Å1.43ÅAromatic
N7C6sing1.38Å1.36ÅAromatic
C6C3doub1.39Å1.41ÅAromatic
C19C20sing1.40Å1.41ÅAromatic
C19C21sing1.48Å1.51Å
C2C3sing1.38Å1.42ÅAromatic
O23C21doub1.21Å1.22Å
C21O22sing1.35Å1.34Å
C2H1sing1.08Å1.08Å
C3H2sing1.08Å1.08Å
C14H3sing1.09Å1.10Å
C14H4sing1.09Å1.10Å
C16H5sing1.08Å1.08Å
C17H6sing1.08Å1.08Å
C18H7sing1.08Å1.08Å
C20H8sing1.08Å1.08Å
C4H9sing1.08Å1.08Å
N7H10sing0.97Å1.00Å
C9H11sing1.08Å1.08Å
N11H12sing0.97Å1.00Å
N11H13sing0.97Å1.00Å
O22H14sing0.97Å0.95Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C16C17C18120.6°120.1°
C17C16C15119.8°120.3°
C17C16H5120.1°119.8°
C16C17H6119.7°119.9°
C17C18C19120.1°119.9°
C18C17H6119.7°119.9°
C17C18H7120.0°120.0°
C16C15C14120.0°120.0°
C16C15C20119.3°120.1°
C15C16H5120.1°119.9°
C18C19C20119.1°119.7°
C18C19C21120.1°120.1°
C19C18H7119.9°120.1°
N11C10C8122.5°120.0°
N11C10O12120.3°120.0°
C10N11H12120.0°120.0°
C10N11H13120.0°120.0°
C8C9C5106.9°107.8°
C9C8C10120.6°125.4°
C9C8N7110.0°109.2°
C8C9H11126.6°126.1°
C9C5C4133.2°133.3°
C9C5C6103.7°106.9°
C5C9H11126.6°126.1°
C8C10O12117.2°120.0°
C10C8N7129.4°125.4°
C5C4C1118.9°119.7°
C4C5C6123.1°119.7°
C5C4H9120.6°120.2°
C4C1O13116.3°119.8°
C4C1C2118.6°120.4°
C1C4H9120.6°120.2°
C14C15C20120.3°119.9°
C15C14O13113.8°109.5°
C15C14H3108.4°109.5°
C15C14H4108.4°109.5°
C15C20C19121.0°119.8°
C15C20H8119.5°120.1°
C8N7C6110.8°108.7°
C8N7H10124.6°125.6°
C5C6N7108.6°107.4°
C5C6C3119.9°119.6°
C1O13C14120.8°117.0°
O13C1C2125.1°119.9°
O13C14H3108.4°109.5°
O13C14H4108.4°109.4°
C1C2C3121.8°120.6°
C1C2H1119.1°119.7°
N7C6C3131.5°133.0°
C6N7H10124.6°125.6°
C6C3C2117.6°120.0°
C6C3H2121.2°120.0°
C20C19C21120.9°120.1°
C19C20H8119.5°120.1°
C19C21O23119.8°120.0°
C19C21O22119.5°120.0°
C3C2H1119.1°119.7°
C2C3H2121.1°120.0°
O23C21O22120.8°120.0°
C21O22H14109.5°117.0°
H3C14H4109.5°109.5°
H12N11H13120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C16C17C18H6180.0°180.0°
C17C16C15H5180.0°180.0°
C16C17C18C190.4°0.0°
C17C16C15C14178.3°180.0°
C17C16C15C204.9°0.3°
C16C17C18H7179.5°180.0°
C18C17C16C152.9°0.0°
C17C18C19H7180.0°180.0°
C17C18C19C200.1°0.3°
C17C18C19C21179.7°180.0°
C18C17C16H5177.1°180.0°
C16C15C14C20173.4°179.7°
C16C15C14O1386.2°89.7°
C16C15C20C194.5°0.6°
C16C15C14H334.4°30.3°
C16C15C14H4153.2°150.3°
C15C16C17H6177.1°180.0°
C16C15C20H8175.4°179.7°
C18C19C20C152.1°0.6°
C18C19C20C21179.6°179.7°
C18C19C21O2366.0°180.0°
C18C19C21O22113.8°0.1°
C19C18C17H6179.6°180.0°
C18C19C20H8177.9°179.7°
N11C10C8C94.8°180.0°
N11C10C8O12178.9°179.9°
N11C10C8N7174.5°0.0°
C10N11H12H13180.0°180.0°
C8C9C5H11180.0°180.0°
C9C8C10N7179.3°180.0°
C9C8C10O12176.3°0.1°
C8C9C5C4179.9°180.0°
C8C9C5C61.0°0.0°
C9C8N7C60.0°0.0°
C9C8N7H10180.0°180.0°
C5C9C8C10180.0°180.0°
C9C5C4C6178.8°180.0°
C9C5C4C1178.7°179.9°
C5C9C8N70.6°0.0°
C9C5C6N71.0°0.0°
C9C5C6C3179.0°180.0°
C9C5C4H91.3°0.0°
C10C8N7C6179.4°180.0°
C10C8N7H100.7°0.0°
C10C8C9H110.0°0.0°
C8C10N11H12178.8°0.0°
C8C10N11H131.1°180.0°
O12C10C8N74.4°179.9°
O12C10N11H120.0°179.9°
O12C10N11H13180.0°0.1°
C5C4C1H9180.0°179.9°
C5C4C1O13179.7°179.7°
C5C4C1C20.1°0.0°
C4C5C6N7179.9°180.0°
C4C5C6C30.1°0.0°
C4C5C9H110.1°0.0°
C1C4C5C60.1°0.0°
C4C1O13C2179.6°179.7°
C4C1O13C1432.2°179.7°
C4C1C2C30.2°0.0°
C4C1C2H1179.8°180.0°
C15C14O13C1168.0°180.0°
C15C14O13H3120.6°120.0°
C15C14O13H4120.7°120.0°
C14C15C20C19178.0°179.7°
C15C14H3H4118.1°120.0°
C14C15C16H51.6°0.0°
C14C15C20H82.0°0.0°
C20C15C14O13100.4°90.0°
C15C20C19H8180.0°179.7°
C15C20C19C21178.2°179.7°
C20C15C14H3139.0°150.0°
C20C15C14H420.3°30.0°
C20C15C16H5175.1°179.7°
C8N7C6C50.7°0.0°
C8N7C6H10180.0°180.0°
C8N7C6C3179.3°180.0°
N7C8C9H11179.4°180.0°
C5C6N7C3179.9°180.0°
C5C6C3C20.0°0.0°
C5C6C3H2180.0°180.0°
C6C5C4H9179.9°180.0°
C5C6N7H10179.3°180.0°
C6C5C9H11179.1°180.0°
O13C1C2C3179.8°179.7°
O13C1C2H10.2°0.3°
C1O13C14H347.3°60.0°
C1O13C14H471.4°60.0°
O13C1C4H90.3°0.4°
C14O13C1C2147.4°0.0°
O13C14H3H4118.0°120.0°
C1C2C3C60.2°0.0°
C1C2C3H1180.0°180.0°
C1C2C3H2179.8°180.0°
C2C1C4H9179.9°180.0°
N7C6C3C2179.9°180.0°
N7C6C3H20.1°0.0°
C6C3C2H2180.0°180.0°
C6C3C2H1179.8°180.0°
C3C6N7H100.8°0.0°
C20C19C21O23114.3°0.3°
C20C19C21O2265.9°179.8°
C20C19C18H7179.9°179.7°
C19C21O23O22179.8°180.0°
C21C19C18H70.3°0.0°
C21C19C20H81.8°0.0°
C19C21O22H14179.8°180.0°
O23C21O22H140.0°0.1°
H1C2C3H20.1°0.0°
H5C16C17H62.9°0.0°
H6C17C18H70.5°0.0°

224931

PDB entries from 2024-09-11

PDB statisticsPDBj update infoContact PDBjnumon