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5KS

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O6'C6'sing1.43Å1.44Å
C6'C5'sing1.53Å1.53Å
C5'O5'sing1.43Å1.43Å
C5'C4'sing1.53Å1.53Å
N2N3doub1.29Å1.41ÅAromatic
N2N1sing1.29Å1.40ÅAromatic
O5'C1'sing1.43Å1.45Å
O2C2sing1.43Å1.43Å
N3CBsing1.35Å1.34ÅAromatic
C3N1sing1.47Å1.47Å
C3C2sing1.53Å1.51Å
C3C4sing1.53Å1.53Å
C4'O4'sing1.43Å1.44Å
C4'C3'sing1.53Å1.53Å
N1CAsing1.35Å1.31ÅAromatic
C1C2sing1.53Å1.52Å
C1S1sing1.81Å1.77Å
C1O5sing1.43Å1.43Å
C1'S1sing1.81Å1.76Å
C1'C2'sing1.53Å1.52Å
C5C4sing1.53Å1.52Å
C5O5sing1.43Å1.44Å
C5C6sing1.53Å1.52Å
C4O4sing1.43Å1.44Å
CBCAdoub1.36Å1.37ÅAromatic
CBCDsing1.49Å1.48Å
O6C6sing1.43Å1.42Å
CECDdoub1.39Å1.39ÅAromatic
CECFsing1.38Å1.39ÅAromatic
C3'C2'sing1.53Å1.54Å
C3'N1'sing1.47Å1.50Å
C2'O2'sing1.43Å1.44Å
CDCIsing1.39Å1.38ÅAromatic
CFCGdoub1.39Å1.39ÅAromatic
N1'N2'sing1.29Å1.39ÅAromatic
N1'CA'sing1.35Å1.34ÅAromatic
CICHdoub1.38Å1.39ÅAromatic
N2'N3'doub1.29Å1.40ÅAromatic
CA'CB'doub1.36Å1.39ÅAromatic
CGCHsing1.39Å1.38ÅAromatic
CGFsing1.35Å1.37Å
CB'N3'sing1.35Å1.36ÅAromatic
CB'CD'sing1.48Å1.50Å
CD'CI'doub1.39Å1.40ÅAromatic
CD'CE'sing1.39Å1.40ÅAromatic
CI'CH'sing1.38Å1.40ÅAromatic
CE'CF'doub1.38Å1.39ÅAromatic
CH'CG'doub1.38Å1.39ÅAromatic
CF'CG'sing1.39Å1.39ÅAromatic
CG'F'sing1.35Å1.37Å
C6H1sing1.09Å1.10Å
C6H2sing1.09Å1.10Å
C5H3sing1.09Å1.10Å
C2H4sing1.09Å1.10Å
C4H5sing1.09Å1.10Å
C5'H6sing1.09Å1.10Å
C4'H7sing1.09Å1.10Å
C2'H8sing1.09Å1.10Å
C6'H9sing1.09Å1.10Å
C6'H10sing1.09Å1.10Å
O6H11sing0.97Å0.95Å
O4H12sing0.97Å0.95Å
C3H13sing1.09Å1.10Å
CAH14sing1.08Å1.08Å
CIH15sing1.08Å1.08Å
CHH16sing1.08Å1.08Å
CFH17sing1.08Å1.08Å
CEH18sing1.08Å1.08Å
O2H19sing0.97Å0.95Å
C1H20sing1.09Å1.10Å
C1'H21sing1.09Å1.10Å
O6'H22sing0.97Å0.95Å
O2'H23sing0.97Å0.95Å
C3'H24sing1.09Å1.10Å
O4'H25sing0.97Å0.95Å
CA'H26sing1.08Å1.08Å
CI'H27sing1.08Å1.08Å
CH'H28sing1.08Å1.08Å
CF'H29sing1.08Å1.08Å
CE'H30sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O6'C6'C5'108.9°109.5°
O6'C6'H9109.6°109.4°
O6'C6'H10109.6°109.5°
C6'O6'H22109.5°114.1°
C6'C5'O5'109.4°109.4°
C6'C5'C4'112.4°109.5°
C6'C5'H6107.9°109.5°
C5'C6'H9109.6°109.4°
C5'C6'H10109.6°109.5°
O5'C5'C4'110.0°109.4°
C5'O5'C1'113.1°114.1°
O5'C5'H6109.2°109.5°
C5'C4'O4'110.2°109.5°
C5'C4'C3'108.6°109.2°
C4'C5'H6107.9°109.5°
C5'C4'H7108.4°109.5°
N3N2N1104.4°110.5°
N2N3CB106.1°108.7°
N2N1C3118.6°125.8°
N2N1CA112.2°108.5°
O5'C1'S1109.4°109.5°
O5'C1'C2'108.4°109.4°
O5'C1'H21111.1°109.4°
O2C2C3109.7°109.5°
O2C2C1109.0°109.6°
O2C2H4110.4°109.6°
C2O2H19109.5°114.0°
N3CBCA112.2°106.2°
N3CBCD116.5°126.9°
N1C3C2112.0°109.5°
N1C3C4108.7°109.6°
C3N1CA129.1°125.7°
N1C3H13109.3°109.5°
C2C3C4109.6°109.0°
C3C2C1109.0°109.2°
C3C2H4109.4°109.5°
C2C3H13108.7°109.5°
C3C4C5109.3°109.2°
C3C4O4110.1°109.5°
C3C4H5108.2°109.5°
C4C3H13108.5°109.6°
O4'C4'C3'111.7°109.5°
O4'C4'H7109.5°109.5°
C4'O4'H25109.5°114.0°
C4'C3'C2'109.0°109.0°
C4'C3'N1'111.5°109.6°
C3'C4'H7108.4°109.5°
C4'C3'H24107.8°109.5°
N1CACB105.0°106.0°
N1CAH14127.5°127.0°
C2C1S1110.9°109.5°
C2C1O5111.6°109.5°
C1C2H4109.2°109.5°
C2C1H20109.9°109.5°
S1C1O5106.1°109.5°
C1S1C1'101.6°103.0°
S1C1H20107.1°109.5°
C1O5C5111.0°114.1°
O5C1H20111.2°109.5°
S1C1'C2'110.6°109.5°
S1C1'H21107.2°109.5°
C1'C2'C3'110.2°109.2°
C1'C2'O2'108.9°109.5°
C1'C2'H8108.0°109.5°
C2'C1'H21110.1°109.5°
C4C5O5108.9°109.4°
C4C5C6112.3°109.5°
C5C4O4111.5°109.6°
C4C5H3108.8°109.5°
C5C4H5108.3°109.5°
O5C5C6108.3°109.5°
O5C5H3109.8°109.5°
C5C6O6111.5°109.5°
C5C6H1109.0°109.5°
C5C6H2108.9°109.5°
C6C5H3108.8°109.5°
O4C4H5109.3°109.5°
C4O4H12109.5°114.0°
CACBCD131.3°126.9°
CBCAH14127.5°126.9°
CBCDCE122.1°120.1°
CBCDCI117.0°120.1°
O6C6H1109.0°109.5°
O6C6H2109.0°109.5°
C6O6H11109.5°114.0°
CDCECF119.2°119.9°
CECDCI120.8°119.8°
CDCEH18120.4°120.1°
CECFCG119.8°120.1°
CECFH17120.1°119.9°
CFCEH18120.4°120.0°
C2'C3'N1'112.4°109.5°
C3'C2'O2'112.9°109.5°
C3'C2'H8107.7°109.6°
C2'C3'H24107.7°109.5°
C3'N1'N2'116.0°125.8°
C3'N1'CA'133.6°125.8°
N1'C3'H24108.2°109.6°
O2'C2'H8109.0°109.5°
C2'O2'H23109.5°114.0°
CDCICH119.7°119.9°
CDCIH15120.1°120.0°
CFCGCH120.3°120.1°
CFCGF120.6°119.9°
CGCFH17120.1°120.0°
N2'N1'CA'110.4°108.5°
N1'N2'N3'105.2°110.5°
N1'CA'CB'107.4°106.1°
N1'CA'H26126.3°127.0°
CICHCG120.2°120.2°
CHCIH15120.2°120.1°
CICHH16119.9°119.9°
N2'N3'CB'108.5°108.8°
CA'CB'N3'108.5°106.2°
CA'CB'CD'127.1°126.9°
CB'CA'H26126.3°127.0°
CHCGF119.1°120.0°
CGCHH16119.9°119.9°
N3'CB'CD'124.4°126.9°
CB'CD'CI'120.5°120.1°
CB'CD'CE'120.2°120.1°
CI'CD'CE'119.3°119.8°
CD'CI'CH'120.3°119.9°
CD'CI'H27119.8°120.0°
CD'CE'CF'120.4°120.0°
CD'CE'H30119.8°120.0°
CI'CH'CG'120.2°120.1°
CH'CI'H27119.8°120.1°
CI'CH'H28119.9°119.9°
CE'CF'CG'120.2°120.0°
CE'CF'H29119.9°120.0°
CF'CE'H30119.8°120.0°
CH'CG'CF'119.7°120.2°
CH'CG'F'119.7°119.9°
CG'CH'H28119.9°119.9°
CF'CG'F'120.6°119.9°
CG'CF'H29119.9°120.0°
H1C6H2109.5°109.5°
H9C6'H10109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O6'C6'C5'H9119.9°119.9°
O6'C6'C5'H10119.9°120.1°
O6'C6'C5'O5'68.8°65.0°
O6'C6'C5'C4'168.8°175.0°
O6'C6'C5'H649.9°55.0°
O6'C6'H9H10120.3°120.0°
C6'C5'O5'C4'123.8°120.0°
C6'C5'O5'H6117.9°120.0°
C6'C5'C4'H6118.9°120.1°
C6'C5'O5'C1'173.4°178.9°
C6'C5'C4'O4'58.0°57.6°
C6'C5'C4'C3'179.4°177.6°
C6'C5'C4'H761.8°62.5°
C5'C6'H9H10120.3°120.0°
C5'C6'O6'H22180.0°180.0°
O5'C5'C4'H6119.1°120.0°
O5'C5'C4'O4'64.0°62.3°
O5'C5'C4'C3'58.6°57.6°
C5'O5'C1'S1177.6°178.9°
C5'O5'C1'C2'61.7°61.1°
O5'C5'C4'H7176.2°177.6°
O5'C5'C6'H951.1°175.1°
O5'C5'C6'H10171.3°55.1°
C5'O5'C1'H2159.4°58.9°
C4'C5'O5'C1'62.8°61.1°
C5'C4'O4'C3'120.9°119.7°
C5'C4'O4'H7119.1°120.1°
C5'C4'C3'H7117.6°119.9°
C5'C4'C3'C2'56.1°57.0°
C5'C4'C3'N1'179.2°176.9°
C4'C5'C6'H971.3°55.1°
C4'C5'C6'H1048.9°64.9°
C5'C4'C3'H2460.6°62.9°
C5'C4'O4'H25180.0°60.0°
N3N2N1C3178.7°180.0°
N3N2N1CA0.5°0.0°
N2N3CBCA1.2°0.0°
N2N3CBCD178.3°180.0°
N1N2N3CB0.4°0.0°
N2N1C3CA177.8°180.0°
N2N1C3C2126.5°145.0°
N2N1C3C4112.3°95.5°
N2N1CACB1.2°0.0°
N2N1C3H135.9°24.8°
N2N1CAH14178.8°180.0°
O5'C1'S1C1109.7°65.0°
O5'C1'S1C2'119.3°119.9°
O5'C1'S1H21120.6°120.0°
O5'C1'C2'H21121.7°119.9°
O5'C1'C2'C3'57.8°57.6°
O5'C1'C2'O2'177.8°177.5°
C1'O5'C5'H655.5°58.9°
O5'C1'C2'H859.6°62.4°
O2C2C3N165.3°63.2°
O2C2C3C1119.3°120.0°
O2C2C3H4121.3°120.2°
O2C2C3C4174.0°176.9°
O2C2C1H4120.8°120.2°
O2C2C1S165.0°62.5°
O2C2C1O5176.9°177.5°
O2C2C3H1355.5°57.0°
O2C2C1H2053.2°57.5°
N3CBCAN11.5°0.0°
N3CBCACD176.6°180.0°
N3CBCDCE19.7°179.8°
N3CBCDCI156.7°0.0°
N3CBCAH14178.5°180.0°
N1C3C2C4120.7°119.9°
N1C3C2H13120.8°120.2°
N1C3C4H13118.7°120.2°
N1C3C2C1175.4°176.8°
N1C3C4C5179.8°176.9°
N1C3C4O457.0°56.9°
C3N1CACB179.1°180.0°
N1C3C2H456.0°57.0°
N1C3C4H562.4°63.2°
C3N1CAH140.9°0.0°
C2C3C4H13118.6°119.9°
C2C3N1CA55.7°35.0°
C3C2C1H4119.5°119.8°
C3C2C1S1175.3°177.6°
C3C2C1O557.2°57.6°
C2C3C4C557.1°57.0°
C2C3C4O465.6°62.9°
C2C3C4H5174.9°176.9°
C3C2O2H19180.0°179.9°
C3C2C1H2066.5°62.4°
C4C3N1CA65.6°84.5°
C4C3C2C154.7°57.0°
C3C4C5O4122.0°119.9°
C3C4C5H5117.7°119.9°
C3C4C5O560.0°57.6°
C3C4C5C6179.9°177.6°
C3C4O4H5118.8°120.1°
C3C4C5H359.6°62.3°
C4C3C2H464.7°62.9°
C3C4O4H12180.0°179.7°
O4'C4'C3'H7120.7°120.2°
O4'C4'C3'C2'65.6°62.9°
O4'C4'C3'N1'59.0°57.0°
O4'C4'C5'H6176.9°177.7°
O4'C4'C3'H24177.7°177.2°
C4'C3'C2'C1'56.9°57.0°
C4'C3'C2'N1'124.1°119.9°
C4'C3'C2'H24116.7°119.9°
C4'C3'N1'H24118.4°120.2°
C4'C3'C2'O2'179.0°176.9°
C4'C3'N1'N2'68.9°95.0°
C4'C3'N1'CA'111.9°85.0°
C3'C4'C5'H660.5°62.4°
C4'C3'C2'H860.6°63.0°
C3'C4'O4'H2559.1°179.7°
N1CACBH14180.0°180.0°
N1CACBCD178.1°180.0°
CAN1C3H13176.2°155.2°
C2C1S1O5121.3°120.0°
C2C1S1H20119.9°120.0°
C2C1O5H20123.0°120.0°
C2C1S1C1'177.6°175.0°
C2C1O5C561.8°61.1°
C1C2C3H1363.8°63.0°
C1C2O2H1960.7°60.2°
S1C1O5H20116.1°120.0°
C1S1C1'C2'131.0°175.0°
S1C1O5C5177.3°178.8°
S1C1C2H455.8°57.8°
C1S1C1'H2110.9°54.9°
O5C1S1C1'61.1°65.0°
C1O5C5C462.5°61.1°
C1O5C5C6175.1°178.9°
C1O5C5H356.5°58.9°
O5C1C2H462.3°62.2°
S1C1'C2'H21118.4°120.1°
S1C1'C2'C3'177.7°177.6°
S1C1'C2'O2'57.9°62.5°
S1C1'C2'H860.3°57.6°
C1'S1C1H2057.7°55.0°
C1'C2'C3'O2'122.0°119.9°
C1'C2'C3'H8117.5°120.0°
C1'C2'C3'N1'178.9°176.9°
C1'C2'O2'H8117.6°120.1°
C1'C2'O2'H23180.0°60.1°
C1'C2'C3'H2459.8°62.9°
C4C5O5C6122.4°120.0°
C4C5O5H3119.0°120.0°
C4C5C6H3120.5°120.1°
C5C4O4H5119.7°120.2°
C4C5C6O6177.6°175.0°
C4C5C6H157.3°55.0°
C4C5C6H262.1°65.0°
C5C4O4H1258.5°60.0°
C5C4C3H1361.5°62.9°
O5C5C6H3119.3°120.0°
O5C5C4O462.0°62.3°
O5C5C6O662.1°65.1°
O5C5C6H1177.5°174.9°
O5C5C6H258.2°54.9°
O5C5C4H5177.7°177.6°
C5O5C1H2061.3°58.9°
C6C5C4O457.9°57.7°
C5C6O6H1120.3°120.0°
C5C6O6H2120.3°120.0°
C5C6H1H2119.0°120.0°
C6C5C4H562.4°62.5°
C5C6O6H11180.0°180.0°
O4C4C5H3178.4°177.8°
O4C4C3H13175.7°177.2°
CACBCDCE163.8°0.3°
CACBCDCI19.7°180.0°
CBCDCECI176.3°179.7°
CBCDCECF178.9°179.7°
CBCDCICH179.6°180.0°
CDCBCAH141.9°0.0°
CBCDCIH150.4°0.0°
CBCDCEH181.1°0.0°
O6C6H1H2119.1°120.0°
O6C6C5H357.1°54.9°
CDCECFH18180.0°179.7°
CDCECFCG1.1°0.6°
CECDCICH3.2°0.3°
CECDCIH15176.8°179.7°
CDCECFH17178.9°179.7°
CFCECDCI2.6°0.6°
CECFCGH17180.0°179.7°
CECFCGCH0.2°0.3°
CECFCGF179.5°179.7°
C2'C3'N1'H24118.8°120.2°
C3'C2'O2'H8119.7°120.2°
C2'C3'N1'N2'53.9°145.4°
C2'C3'N1'CA'125.4°34.6°
C2'C3'C4'H7173.7°176.9°
C3'C2'C1'H2164.0°62.3°
C3'C2'O2'H2357.3°179.8°
N1'C3'C2'O2'56.9°63.2°
C3'N1'N2'CA'179.4°180.0°
C3'N1'N2'N3'179.7°180.0°
C3'N1'CA'CB'179.6°180.0°
N1'C3'C4'H761.7°63.2°
N1'C3'C2'H863.5°56.9°
C3'N1'CA'H260.4°0.1°
O2'C2'C1'H2160.4°57.6°
O2'C2'C3'H2462.2°57.0°
CDCICHH15180.0°180.0°
CDCICHCG2.2°0.0°
CDCICHH16177.8°180.0°
CICDCEH18177.4°179.7°
CFCGCHCI0.7°0.0°
CFCGCHF179.6°179.9°
CFCGCHH16179.3°180.0°
CGCFCEH18178.9°179.7°
N2'N1'CA'CB'0.4°0.0°
N1'N2'N3'CB'0.0°0.0°
N2'N1'C3'H24172.7°25.2°
N2'N1'CA'H26179.6°180.0°
CA'N1'N2'N3'0.3°0.0°
N1'CA'CB'H26180.0°180.0°
N1'CA'CB'N3'0.3°0.0°
N1'CA'CB'CD'178.5°180.0°
CA'N1'C3'H246.5°154.8°
CICHCGH16180.0°180.0°
CICHCGF178.9°180.0°
N2'N3'CB'CA'0.2°0.0°
N2'N3'CB'CD'178.4°180.0°
CA'CB'N3'CD'178.2°180.0°
CA'CB'CD'CI'19.2°180.0°
CA'CB'CD'CE'163.2°0.2°
CGCHCIH15177.8°180.0°
CHCGCFH17179.8°180.0°
FCGCHH161.1°0.0°
FCGCFH170.5°0.0°
N3'CB'CD'CI'158.6°0.1°
N3'CB'CD'CE'19.0°179.8°
N3'CB'CA'H26179.7°180.0°
CB'CD'CI'CE'177.6°179.8°
CB'CD'CI'CH'178.9°180.0°
CB'CD'CE'CF'179.0°179.7°
CD'CB'CA'H261.5°0.0°
CB'CD'CI'H271.1°0.1°
CB'CD'CE'H301.0°0.1°
CD'CI'CH'H27180.0°179.9°
CI'CD'CE'CF'1.4°0.5°
CD'CI'CH'CG'0.4°0.1°
CD'CI'CH'H28179.6°180.0°
CI'CD'CE'H30178.6°179.7°
CE'CD'CI'CH'1.3°0.2°
CD'CE'CF'H30180.0°179.8°
CD'CE'CF'CG'0.8°0.6°
CE'CD'CI'H27178.7°179.7°
CD'CE'CF'H29179.2°179.7°
CI'CH'CG'H28180.0°179.9°
CI'CH'CG'CF'0.3°0.0°
CI'CH'CG'F'179.7°179.9°
CE'CF'CG'CH'0.1°0.3°
CE'CF'CG'H29180.0°179.7°
CE'CF'CG'F'179.9°179.7°
CH'CG'CF'F'180.0°179.9°
CG'CH'CI'H27179.6°180.0°
CH'CG'CF'H29179.9°180.0°
CF'CG'CH'H28179.7°179.9°
CG'CF'CE'H30179.2°179.6°
F'CG'CH'H280.3°0.0°
F'CG'CF'H290.1°0.1°
H1C6C5H363.2°65.0°
H1C6O6H1159.7°60.0°
H2C6C5H3177.4°174.9°
H2C6O6H1159.7°60.0°
H3C5C4H558.1°57.6°
H4C2C3H13176.8°177.2°
H4C2O2H1959.3°60.0°
H4C2C1H20174.0°177.8°
H5C4O4H1261.2°60.2°
H5C4C3H1356.3°57.0°
H6C5'C4'H757.1°57.6°
H6C5'C6'H9169.8°64.9°
H6C5'C6'H1070.0°175.1°
H7C4'C3'H2457.0°57.1°
H7C4'O4'H2560.9°60.1°
H8C2'C1'H21178.6°177.7°
H8C2'O2'H2362.5°60.1°
H8C2'C3'H24177.4°177.2°
H9C6'O6'H2260.1°60.0°
H10C6'O6'H2260.1°60.0°
H15CICHH162.2°0.0°
H17CFCEH181.1°0.0°
H27CI'CH'H280.4°0.1°
H29CF'CE'H300.8°0.1°

246905

PDB entries from 2025-12-31

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