Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

5JR

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
C15C20doub1.38Å1.38ÅAromatic
C15C16sing1.38Å1.39ÅAromatic
C20C19sing1.39Å1.42ÅAromatic
C16C17doub1.38Å1.38ÅAromatic
O4C21doub1.21Å1.22Å
C19N6sing1.40Å1.42Å
C19C18doub1.40Å1.40ÅAromatic
C17C18sing1.39Å1.41ÅAromatic
C21N6sing1.35Å1.35Å
C21C22sing1.51Å1.51Å
C18N5sing1.40Å1.38Å
C22C26sing1.53Å1.50Å
N7C27sing1.47Å1.47Å
N7C30sing1.47Å1.47Å
N7C25sing1.47Å1.47Å
C27C28sing1.53Å1.51Å
C29C30sing1.53Å1.51Å
C29N8sing1.47Å1.47Å
N5C14sing1.39Å1.35Å
C24C25sing1.53Å1.51Å
C24C23sing1.53Å1.51Å
N8C28sing1.47Å1.46Å
N8C31sing1.35Å1.35Å
C23N1sing1.47Å1.49Å
N4C14doub1.32Å1.35ÅAromatic
N4C10sing1.33Å1.34ÅAromatic
C14N3sing1.33Å1.34ÅAromatic
O5C31doub1.21Å1.23Å
C31C32sing1.51Å1.55Å
N3C13doub1.33Å1.32ÅAromatic
C10N1sing1.38Å1.39Å
C10C9doub1.40Å1.39ÅAromatic
N1C11sing1.34Å1.38Å
C33C32sing1.53Å1.52Å
C13C9sing1.37Å1.45ÅAromatic
C9C12sing1.51Å1.49Å
O3C11doub1.22Å1.22Å
C11N2sing1.35Å1.39Å
N2C12sing1.47Å1.45Å
N2C2sing1.40Å1.41Å
C2C3doub1.39Å1.39ÅAromatic
C2C1sing1.39Å1.38ÅAromatic
C3C4sing1.39Å1.39ÅAromatic
C1C6doub1.39Å1.38ÅAromatic
C4O2sing1.36Å1.37Å
C4C5doub1.39Å1.39ÅAromatic
C6O1sing1.36Å1.37Å
C6C5sing1.39Å1.39ÅAromatic
O2C7sing1.43Å1.42Å
O1C8sing1.43Å1.43Å
C1H1sing1.08Å1.08Å
C3H2sing1.08Å1.08Å
C5H3sing1.08Å1.08Å
N5H4sing0.97Å1.00Å
N6H5sing0.97Å1.00Å
C7H6sing1.09Å1.10Å
C7H7sing1.09Å1.10Å
C7H8sing1.09Å1.10Å
C8H10sing1.09Å1.10Å
C8H11sing1.09Å1.10Å
C8H12sing1.09Å1.10Å
C12H13sing1.09Å1.10Å
C12H14sing1.09Å1.10Å
C13H15sing1.08Å1.08Å
C15H16sing1.08Å1.08Å
C16H17sing1.08Å1.08Å
C17H18sing1.08Å1.08Å
C20H19sing1.08Å1.08Å
C22H20sing1.09Å1.10Å
C22H21sing1.09Å1.10Å
C23H22sing1.09Å1.10Å
C23H23sing1.09Å1.10Å
C24H24sing1.09Å1.10Å
C24H25sing1.09Å1.10Å
C25H26sing1.09Å1.10Å
C25H27sing1.09Å1.10Å
C26H28sing1.09Å1.10Å
C26H29sing1.09Å1.10Å
C26H30sing1.09Å1.10Å
C27H31sing1.09Å1.10Å
C27H32sing1.09Å1.10Å
C28H33sing1.09Å1.10Å
C28H34sing1.09Å1.10Å
C29H35sing1.09Å1.10Å
C29H36sing1.09Å1.10Å
C30H37sing1.09Å1.10Å
C30H38sing1.09Å1.10Å
C32H39sing1.09Å1.10Å
C32H40sing1.09Å1.10Å
C33H41sing1.09Å1.10Å
C33H42sing1.09Å1.10Å
C33H43sing1.09Å1.10Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
C20C15C16120.5°120.2°
C15C20C19120.5°120.0°
C20C15H16119.8°119.9°
C15C20H19119.8°120.0°
C15C16C17120.0°120.2°
C16C15H16119.7°119.9°
C15C16H17120.0°119.9°
C20C19N6121.9°120.1°
C20C19C18118.7°119.8°
C19C20H19119.7°120.0°
C16C17C18120.5°120.0°
C17C16H17120.0°119.9°
C16C17H18119.7°120.0°
O4C21N6122.4°120.0°
O4C21C22122.6°120.0°
N6C19C18119.4°120.0°
C19N6C21125.9°120.0°
C19N6H5117.1°120.0°
C19C18C17119.8°119.8°
C19C18N5118.3°120.1°
C17C18N5121.8°120.1°
C18C17H18119.7°120.0°
N6C21C22115.0°120.0°
C21N6H5117.1°120.0°
C21C22C26113.7°109.4°
C21C22H20108.4°109.5°
C21C22H21108.4°109.5°
C18N5C14131.3°120.0°
C18N5H4114.3°120.0°
C26C22H20108.4°109.5°
C26C22H21108.4°109.5°
C22C26H28109.5°109.5°
C22C26H29109.4°109.5°
C22C26H30109.5°109.5°
C27N7C30110.0°111.3°
C27N7C25110.2°110.9°
N7C27C28111.4°109.3°
N7C27H31109.0°109.5°
N7C27H32109.0°109.6°
C30N7C25110.6°111.0°
N7C30C29110.8°109.4°
N7C30H37109.1°109.5°
N7C30H38109.2°109.5°
N7C25C24113.4°109.4°
N7C25H26108.5°109.5°
N7C25H27108.5°109.4°
C27C28N8109.3°108.5°
C28C27H31109.0°109.5°
C28C27H32109.0°109.5°
C27C28H33109.5°109.6°
C27C28H34109.5°109.6°
C30C29N8110.1°108.5°
C30C29H35109.3°109.6°
C30C29H36109.3°109.7°
C29C30H37109.1°109.5°
C29C30H38109.1°109.5°
C29N8C28112.2°118.3°
C29N8C31126.2°120.8°
N8C29H35109.3°109.6°
N8C29H36109.3°109.7°
N5C14N4119.9°119.0°
N5C14N3113.7°118.9°
C14N5H4114.3°120.0°
C25C24C23114.3°109.4°
C25C24H24108.3°109.5°
C25C24H25108.2°109.4°
C24C25H26108.4°109.5°
C24C25H27108.5°109.5°
C24C23N1113.3°109.4°
C24C23H22108.5°109.5°
C24C23H23108.5°109.5°
C23C24H24108.2°109.5°
C23C24H25108.3°109.5°
C28N8C31121.5°120.9°
N8C28H33109.5°109.6°
N8C28H34109.5°109.7°
N8C31O5119.3°120.0°
N8C31C32119.5°120.0°
C23N1C10120.9°118.5°
C23N1C11119.3°118.4°
N1C23H22108.5°109.4°
N1C23H23108.5°109.5°
C14N4C10117.9°120.3°
N4C14N3126.4°122.1°
N4C10N1119.1°121.6°
N4C10C9119.8°118.6°
C14N3C13117.4°120.8°
O5C31C32121.2°120.0°
C31C32C33112.1°109.5°
C31C32H39108.8°109.5°
C31C32H40108.8°109.5°
N3C13C9119.7°118.6°
N3C13H15120.2°120.7°
N1C10C9121.1°119.8°
C10N1C11119.8°123.0°
C10C9C13118.8°119.6°
C10C9C12120.4°118.2°
N1C11O3119.7°118.4°
N1C11N2118.3°123.2°
C33C32H39108.8°109.5°
C33C32H40108.8°109.4°
C32C33H41109.5°109.4°
C32C33H42109.5°109.5°
C32C33H43109.5°109.5°
C13C9C12120.7°122.3°
C9C13H15120.2°120.7°
C9C12N2111.7°116.6°
C9C12H13108.9°108.0°
C9C12H14108.9°108.0°
O3C11N2121.9°118.4°
C11N2C12124.6°119.1°
C11N2C2121.1°120.4°
C12N2C2114.2°120.5°
N2C12H13108.9°108.1°
N2C12H14108.9°108.0°
N2C2C3120.3°120.0°
N2C2C1119.8°120.0°
C3C2C1119.6°120.0°
C2C3C4120.1°120.0°
C2C3H2120.0°120.0°
C2C1C6120.4°119.9°
C2C1H1119.8°120.0°
C3C4O2117.5°120.0°
C3C4C5120.5°120.0°
C4C3H2120.0°120.0°
C1C6O1117.4°120.0°
C1C6C5120.2°120.0°
C6C1H1119.8°120.0°
O2C4C5122.0°120.0°
C4O2C7118.6°117.0°
C4C5C6119.2°120.0°
C4C5H3120.4°120.0°
O1C6C5122.4°120.0°
C6O1C8117.7°117.0°
C6C5H3120.4°120.0°
O2C7H6109.5°109.5°
O2C7H7109.5°109.5°
O2C7H8109.5°109.5°
O1C8H10109.5°109.5°
O1C8H11109.4°109.4°
O1C8H12109.5°109.5°
H6C7H7109.4°109.5°
H6C7H8109.5°109.4°
H7C7H8109.5°109.5°
H10C8H11109.4°109.4°
H10C8H12109.4°109.5°
H11C8H12109.5°109.5°
H13C12H14109.5°107.8°
H20C22H21109.5°109.5°
H22C23H23109.5°109.5°
H24C24H25109.4°109.5°
H26C25H27109.5°109.5°
H28C26H29109.5°109.5°
H28C26H30109.4°109.4°
H29C26H30109.5°109.4°
H31C27H32109.5°109.5°
H33C28H34109.4°109.8°
H35C29H36109.5°109.8°
H37C30H38109.4°109.5°
H39C32H40109.5°109.5°
H41C33H42109.4°109.4°
H41C33H43109.5°109.5°
H42C33H43109.5°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
C20C15C16H16180.0°179.8°
C15C20C19H19180.0°180.0°
C20C15C16C170.3°0.1°
C15C20C19N6179.4°180.0°
C15C20C19C181.0°0.0°
C20C15C16H17179.7°180.0°
C16C15C20C190.3°0.0°
C15C16C17H17180.0°180.0°
C15C16C17C182.1°0.0°
C15C16C17H18177.9°180.0°
C16C15C20H19179.7°180.0°
C20C19N6C18178.4°180.0°
C20C19C18C172.8°0.0°
C20C19N6C2144.6°24.8°
C20C19C18N5179.1°180.0°
C20C19N6H5135.5°155.2°
C19C20C15H16179.7°179.8°
C16C17C18C193.4°0.0°
C16C17C18H18180.0°180.0°
C16C17C18N5179.6°180.0°
C17C16C15H16179.7°179.8°
O4C21N6C193.1°5.7°
O4C21N6C22179.2°180.0°
O4C21C22C26111.1°0.0°
O4C21N6H5176.9°174.3°
O4C21C22H20128.2°120.0°
O4C21C22H219.5°120.0°
N6C19C18C17178.8°180.0°
C19N6C21H5180.0°180.0°
C19N6C21C22177.7°174.3°
N6C19C18N52.5°0.0°
N6C19C20H190.7°0.0°
C19C18C17N5176.2°180.0°
C18C19N6C21137.1°155.2°
C19C18N5C14125.1°145.5°
C19C18N5H455.0°34.6°
C18C19N6H542.9°24.8°
C19C18C17H18176.6°180.0°
C18C19C20H19179.0°180.0°
C17C18N5C1451.2°34.5°
C17C18N5H4128.8°145.4°
C18C17C16H17177.9°180.0°
N6C21C22C2668.0°180.0°
N6C21C22H2052.6°60.0°
N6C21C22H21171.4°60.0°
C21C22C26H20120.6°120.0°
C21C22C26H21120.6°120.0°
C22C21N6H52.3°5.7°
C21C22H20H21118.1°120.0°
C21C22C26H28180.0°180.0°
C21C22C26H2960.0°60.0°
C21C22C26H3060.0°60.0°
C18N5C14H4180.0°179.9°
C18N5C14N415.2°174.7°
C18N5C14N3165.1°5.6°
N5C18C17H180.4°0.0°
C26C22H20H21118.1°120.0°
C22C26H28H29120.0°120.1°
C22C26H28H30120.0°120.0°
C22C26H29H30120.0°120.1°
C27N7C30C25122.0°124.1°
N7C27C28H31120.3°119.9°
N7C27C28H32120.3°120.0°
C27N7C30C2917.2°63.1°
C27N7C25C24160.6°170.0°
N7C27C28N865.6°53.9°
C27N7C25H2678.8°70.0°
C27N7C25H2740.1°50.0°
N7C27H31H32119.1°120.2°
N7C27C28H33174.4°173.6°
N7C27C28H3454.4°65.9°
C27N7C30H37103.0°56.8°
C27N7C30H38137.5°176.9°
C30N7C27C2844.9°63.1°
N7C30C29H37120.2°120.0°
N7C30C29H38120.2°120.0°
N7C30C29N864.5°53.8°
C30N7C25C2477.5°65.7°
C30N7C25H2643.0°54.3°
C30N7C25H27161.9°174.3°
C30N7C27H3175.4°177.0°
C30N7C27H32165.1°56.8°
N7C30C29H35175.4°65.8°
N7C30C29H3655.6°173.6°
N7C30H37H38119.4°120.0°
C25N7C27C2877.4°172.7°
C25N7C30C29139.2°172.8°
N7C25C24H26120.6°120.0°
N7C25C24H27120.6°120.0°
N7C25C24C23105.3°180.0°
N7C25C24H24134.0°60.0°
N7C25C24H2515.5°60.0°
N7C25H26H27118.2°120.0°
C25N7C27H31162.4°52.8°
C25N7C27H3242.9°67.3°
C25N7C30H3719.0°67.2°
C25N7C30H38100.6°52.8°
C27C28N8C2917.2°51.2°
C27C28N8H33120.0°119.7°
C27C28N8H34120.0°119.7°
C27C28N8C31166.7°128.8°
C28C27H31H32119.1°120.0°
C27C28H33H34120.0°120.5°
C30C29N8H35120.1°119.6°
C30C29N8H36120.1°119.8°
C30C29N8C2843.8°51.2°
C30C29N8C31132.2°128.9°
C30C29H35H36119.7°120.5°
C29C30H37H38119.4°120.1°
C29N8C28C31176.1°179.9°
C29N8C31O593.9°180.0°
C29N8C31C3287.8°0.1°
C29N8C28H33137.1°170.9°
C29N8C28H34102.8°68.5°
N8C29H35H36119.7°120.6°
N8C29C30H3755.7°66.2°
N8C29C30H38175.2°173.8°
N5C14N4N3179.6°179.8°
N5C14N4C10179.5°180.0°
N5C14N3C13179.4°180.0°
C25C24C23H24120.7°120.0°
C25C24C23H25120.7°120.0°
C25C24C23N183.6°180.0°
C25C24C23H22155.8°60.1°
C25C24C23H2336.9°60.0°
C25C24H24H25117.8°119.9°
C24C25H26H27118.2°120.1°
C24C23N1H22120.6°119.9°
C24C23N1H23120.5°120.0°
C24C23N1C1072.9°89.7°
C24C23N1C11106.7°90.0°
C24C23H22H23118.2°120.0°
C23C24H24H25117.8°120.1°
C23C24C25H2615.3°60.0°
C23C24C25H27134.2°60.0°
C28N8C31O590.5°0.1°
C28N8C31C3287.7°180.0°
N8C28C27H3154.7°173.8°
N8C28C27H32174.1°66.1°
N8C28H33H34120.1°120.5°
C28N8C29H35163.9°68.5°
C28N8C29H3676.3°171.0°
N8C31O5C32178.2°180.0°
N8C31C32C3376.4°180.0°
C31N8C28H3346.7°9.2°
C31N8C28H3473.3°111.4°
C31N8C29H3512.1°111.5°
C31N8C29H36107.7°9.1°
N8C31C32H39163.2°60.0°
N8C31C32H4044.0°60.1°
C23N1C10N416.2°0.3°
C23N1C10C11179.5°179.7°
C23N1C10C9164.1°179.7°
C23N1C11O313.3°0.2°
C23N1C11N2164.6°179.7°
N1C23H22H23118.2°120.1°
N1C23C24H2437.1°60.0°
N1C23C24H25155.7°60.0°
N4C14N3C131.0°0.2°
C14N4C10N1179.7°179.9°
C14N4C10C90.6°0.1°
N4C14N5H4164.8°5.2°
C10N4C14N30.9°0.2°
N4C10N1C9179.7°180.0°
N4C10N1C11163.3°180.0°
N4C10C9C130.4°0.1°
N4C10C9C12179.9°180.0°
C14N3C13C90.7°0.1°
N3C14N5H414.9°174.5°
C14N3C13H15179.3°180.0°
O5C31C32C33105.4°0.0°
O5C31C32H3915.0°120.0°
O5C31C32H40134.2°120.0°
C31C32C33H39120.4°120.0°
C31C32C33H40120.4°120.0°
C31C32H39H40118.8°120.0°
C31C32C33H41180.0°60.0°
C31C32C33H4260.0°60.0°
C31C32C33H4360.0°180.0°
N3C13C9C100.5°0.0°
N3C13C9H15180.0°179.9°
N3C13C9C12179.9°180.0°
N1C10C9C13179.9°180.0°
N1C10C9C120.3°0.0°
C10N1C11O3166.2°180.0°
C10N1C11N215.9°0.0°
C10N1C23H2247.7°30.2°
C10N1C23H23166.6°150.3°
C9C10N1C1116.3°0.0°
C10C9C13C12179.7°179.9°
C10C9C12N215.2°0.1°
C10C9C12H13135.6°121.8°
C10C9C12H14105.1°121.9°
C10C9C13H15179.6°179.9°
N1C11O3N2177.8°179.9°
N1C11N2C121.1°0.0°
N1C11N2C2179.8°179.9°
C11N1C23H22132.8°150.0°
C11N1C23H2313.9°30.0°
C33C32H39H40118.8°120.0°
C32C33H41H42120.0°120.0°
C32C33H41H43120.0°120.0°
C32C33H42H43120.0°120.0°
C13C9C12N2165.1°180.0°
C13C9C12H1344.8°58.1°
C13C9C12H1474.6°58.2°
C9C12N2C1116.0°0.0°
C9C12N2H13120.3°121.8°
C9C12N2H14120.4°121.8°
C9C12N2C2165.2°180.0°
C9C12H13H14119.0°116.5°
C12C9C13H150.1°0.1°
O3C11N2C12176.7°180.0°
O3C11N2C22.0°0.0°
C11N2C12C2178.8°180.0°
C11N2C2C383.4°114.9°
C11N2C2C1103.4°65.2°
C11N2C12H13136.3°121.8°
C11N2C12H14104.3°121.8°
C12N2C2C395.4°65.2°
C12N2C2C177.8°114.8°
N2C12H13H14119.0°116.5°
N2C2C3C1173.3°179.9°
N2C2C3C4175.5°180.0°
N2C2C1C6176.6°180.0°
N2C2C1H13.4°0.2°
N2C2C3H24.5°0.1°
C2N2C12H1344.9°58.2°
C2N2C12H1474.4°58.2°
C2C3C4H2180.0°180.0°
C3C2C1C63.3°0.0°
C2C3C4O2178.4°180.0°
C2C3C4C50.7°0.0°
C3C2C1H1176.7°179.7°
C1C2C3C42.2°0.0°
C2C1C6H1180.0°179.8°
C2C1C6O1179.5°179.7°
C2C1C6C52.8°0.0°
C1C2C3H2177.8°180.0°
C3C4O2C5179.1°179.9°
C3C4C5C60.2°0.1°
C3C4O2C7169.8°180.0°
C3C4C5H3179.8°180.0°
C1C6C5C41.3°0.1°
C1C6O1C5177.6°179.7°
C1C6O1C8162.5°180.0°
C1C6C5H3178.7°180.0°
O2C4C5C6178.9°180.0°
O2C4C3H21.6°0.0°
O2C4C5H31.1°0.1°
C4O2C7H6180.0°180.0°
C4O2C7H760.0°60.0°
C4O2C7H860.0°60.0°
C4C5C6O1178.8°179.7°
C4C5C6H3180.0°179.9°
C5C4O2C711.1°0.0°
C5C4C3H2179.3°179.9°
O1C6C1H10.5°0.0°
O1C6C5H31.2°0.2°
C6O1C8H10180.0°59.9°
C6O1C8H1160.0°60.0°
C6O1C8H1260.0°180.0°
C5C6O1C815.1°0.3°
C5C6C1H1177.2°179.8°
O2C7H6H7120.0°120.0°
O2C7H6H8120.0°120.0°
O2C7H7H8120.0°120.0°
O1C8H10H11120.0°119.9°
O1C8H10H12120.0°120.1°
O1C8H11H12120.0°120.0°
H6C7H7H8120.0°120.0°
H10C8H11H12120.0°120.0°
H16C15C16H170.3°0.2°
H16C15C20H190.3°0.2°
H17C16C17H182.1°0.0°
H20C22C26H2859.3°60.0°
H20C22C26H29179.4°180.0°
H20C22C26H3060.6°59.9°
H21C22C26H2859.4°60.0°
H21C22C26H2960.6°60.0°
H21C22C26H30179.4°180.0°
H22C23C24H2483.5°179.9°
H22C23C24H2535.1°59.9°
H23C23C24H24157.7°60.0°
H23C23C24H2583.8°179.9°
H24C24C25H26105.4°60.0°
H24C24C25H2713.5°180.0°
H25C24C25H26136.1°180.0°
H25C24C25H27105.1°60.0°
H28C26H29H30120.0°119.9°
H31C27C28H3365.3°66.5°
H31C27C28H34174.7°54.0°
H32C27C28H3354.1°53.6°
H32C27C28H3465.9°174.1°
H35C29C30H3764.4°174.2°
H35C29C30H3855.1°54.1°
H36C29C30H37175.8°53.6°
H36C29C30H3864.7°66.4°
H39C32C33H4159.6°180.0°
H39C32C33H42179.6°60.0°
H39C32C33H4360.4°60.0°
H40C32C33H4159.6°60.0°
H40C32C33H4260.4°179.9°
H40C32C33H43179.6°60.0°
H41C33H42H43120.0°120.0°

222415

PDB entries from 2024-07-10

PDB statisticsPDBj update infoContact PDBjnumon