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Summary Geometry Related PDB entries

5FL

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
N	C4	doub	1.32Å	1.33Å	Aromatic
N	C	sing	1.32Å	1.33Å	Aromatic
C4	C3	sing	1.38Å	1.38Å	Aromatic
C	C1	doub	1.38Å	1.38Å	Aromatic
C3	C2	doub	1.40Å	1.39Å	Aromatic
C1	C2	sing	1.40Å	1.39Å	Aromatic
C2	C5	sing	1.48Å	1.48Å
C5	C10	doub	1.39Å	1.40Å	Aromatic
C5	C6	sing	1.39Å	1.39Å	Aromatic
C10	C9	sing	1.38Å	1.39Å	Aromatic
C6	C7	doub	1.39Å	1.39Å	Aromatic
C9	C8	doub	1.38Å	1.38Å	Aromatic
C7	C8	sing	1.40Å	1.39Å	Aromatic
C7	C11	sing	1.48Å	1.49Å
O	C11	doub	1.21Å	1.22Å
C11	O1	sing	1.35Å	1.30Å
C1	H1	sing	1.08Å	1.08Å
C3	H2	sing	1.08Å	1.08Å
C4	H3	sing	1.08Å	1.08Å
C6	H4	sing	1.08Å	1.08Å
C8	H5	sing	1.08Å	1.08Å
O1	H8	sing	0.97Å	0.95Å
C9	H6	sing	1.08Å	1.08Å
C10	H7	sing	1.08Å	1.08Å
C	H	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C4	N	C	116.7°	122.0°
N	C4	C3	123.8°	120.9°
N	C4	H3	118.1°	119.6°
N	C	C1	123.7°	120.9°
N	C	H	118.1°	119.5°
C4	C3	C2	119.3°	119.0°
C4	C3	H2	120.4°	120.5°
C3	C4	H3	118.1°	119.5°
C	C1	C2	119.3°	119.0°
C	C1	H1	120.4°	120.5°
C1	C	H	118.2°	119.6°
C3	C2	C1	117.1°	118.2°
C3	C2	C5	121.2°	120.9°
C2	C3	H2	120.4°	120.5°
C1	C2	C5	121.7°	120.8°
C2	C1	H1	120.3°	120.5°
C2	C5	C10	121.3°	120.1°
C2	C5	C6	120.4°	120.0°
C10	C5	C6	118.1°	119.9°
C5	C10	C9	120.7°	120.2°
C5	C10	H7	119.6°	119.9°
C5	C6	C7	121.6°	119.7°
C5	C6	H4	119.2°	120.1°
C10	C9	C8	120.3°	120.3°
C10	C9	H6	119.9°	119.9°
C9	C10	H7	119.7°	119.9°
C6	C7	C8	119.2°	119.8°
C6	C7	C11	120.0°	120.1°
C7	C6	H4	119.2°	120.1°
C9	C8	C7	120.1°	120.1°
C9	C8	H5	120.0°	119.9°
C8	C9	H6	119.8°	119.9°
C8	C7	C11	120.8°	120.1°
C7	C8	H5	120.0°	120.0°
C7	C11	O	121.8°	120.0°
C7	C11	O1	114.7°	120.0°
O	C11	O1	123.5°	120.0°
C11	O1	H8	109.5°	117.0°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
N	C4	C3	H3	180.0°	179.9°
C4	N	C	C1	0.1°	0.6°
N	C4	C3	C2	0.0°	0.0°
N	C4	C3	H2	180.0°	180.0°
C4	N	C	H	179.8°	180.0°
C	N	C4	C3	0.2°	0.3°
N	C	C1	H	180.0°	179.4°
N	C	C1	C2	0.1°	0.6°
N	C	C1	H1	179.9°	179.7°
C	N	C4	H3	179.8°	179.7°
C4	C3	C2	H2	180.0°	179.9°
C4	C3	C2	C1	0.2°	0.0°
C4	C3	C2	C5	178.9°	179.9°
C	C1	C2	C3	0.3°	0.3°
C	C1	C2	H1	180.0°	179.7°
C	C1	C2	C5	178.8°	179.8°
C3	C2	C1	C5	179.1°	179.9°
C3	C2	C5	C10	118.5°	180.0°
C3	C2	C5	C6	56.2°	0.2°
C3	C2	C1	H1	179.7°	180.0°
C2	C3	C4	H3	180.0°	180.0°
C1	C2	C5	C10	60.6°	0.1°
C1	C2	C5	C6	124.7°	179.7°
C1	C2	C3	H2	179.7°	179.9°
C2	C1	C	H	179.9°	180.0°
C2	C5	C10	C6	174.8°	179.8°
C2	C5	C10	C9	172.7°	179.8°
C2	C5	C6	C7	172.4°	180.0°
C5	C2	C1	H1	1.1°	0.1°
C5	C2	C3	H2	1.1°	0.0°
C2	C5	C6	H4	7.6°	0.0°
C2	C5	C10	H7	7.3°	0.1°
C5	C10	C9	H7	180.0°	179.9°
C10	C5	C6	C7	2.5°	0.2°
C5	C10	C9	C8	0.3°	0.4°
C10	C5	C6	H4	177.5°	179.8°
C5	C10	C9	H6	179.7°	179.8°
C6	C5	C10	C9	2.1°	0.4°
C5	C6	C7	H4	180.0°	180.0°
C5	C6	C7	C8	1.1°	0.0°
C5	C6	C7	C11	178.7°	180.0°
C6	C5	C10	H7	177.9°	179.7°
C10	C9	C8	H6	180.0°	179.8°
C10	C9	C8	C7	1.2°	0.2°
C10	C9	C8	H5	178.9°	179.8°
C6	C7	C8	C9	0.8°	0.0°
C6	C7	C8	C11	179.8°	180.0°
C6	C7	C11	O	1.5°	0.0°
C6	C7	C11	O1	179.1°	180.0°
C6	C7	C8	H5	179.3°	180.0°
C9	C8	C7	H5	180.0°	180.0°
C9	C8	C7	C11	179.5°	180.0°
C8	C9	C10	H7	179.7°	179.7°
C8	C7	C11	O	178.7°	180.0°
C8	C7	C11	O1	0.7°	0.0°
C8	C7	C6	H4	178.9°	180.0°
C7	C8	C9	H6	178.8°	180.0°
C7	C11	O	O1	179.4°	180.0°
C11	C7	C6	H4	1.3°	0.0°
C11	C7	C8	H5	0.5°	0.0°
C7	C11	O1	H8	179.4°	180.0°
O	C11	O1	H8	0.0°	0.1°
H1	C1	C	H	0.1°	0.4°
H2	C3	C4	H3	0.0°	0.1°
H5	C8	C9	H6	1.1°	0.0°
H6	C9	C10	H7	0.3°	0.1°

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PDB entries from 2024-08-07

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