4BD
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O5' | PA | sing | 1.61Å | 1.60Å | |
| C3A | PA | sing | 1.82Å | 1.80Å | |
| PA | O2A | doub | 1.48Å | 1.49Å | |
| PA | O1A | sing | 1.61Å | 1.49Å | |
| O1A | HO1A | sing | 0.97Å | 0.95Å | |
| F1A | C3A | sing | 1.40Å | 1.33Å | |
| PB | C3A | sing | 1.82Å | 1.79Å | |
| C3A | F2A | sing | 1.40Å | 1.34Å | |
| C5' | O5' | sing | 1.43Å | 1.43Å | |
| O1B | PB | doub | 1.48Å | 1.48Å | |
| PB | O2B | sing | 1.61Å | 1.48Å | |
| PB | O3B | sing | 1.61Å | 1.51Å | |
| O2B | HO2B | sing | 0.97Å | 0.95Å | |
| O3B | PG | sing | 1.61Å | 1.52Å | |
| PG | O2G | doub | 1.48Å | 1.48Å | |
| PG | O1G | sing | 1.61Å | 1.49Å | |
| PG | O3G | sing | 1.61Å | 1.49Å | |
| O1G | HO1G | sing | 0.97Å | 0.95Å | |
| O3G | HO3G | sing | 0.97Å | 0.95Å | |
| C4' | C5' | sing | 1.53Å | 1.51Å | |
| C5' | H5' | sing | 1.09Å | 1.10Å | |
| C5' | H5'A | sing | 1.09Å | 1.10Å | |
| C3' | C4' | sing | 1.55Å | 1.51Å | |
| O4' | C4' | sing | 1.44Å | 1.45Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| C1' | O4' | sing | 1.44Å | 1.42Å | |
| C2' | C1' | sing | 1.54Å | 1.53Å | |
| C1' | N1 | sing | 1.47Å | 1.48Å | |
| C1' | H1' | sing | 1.09Å | 1.10Å | |
| C2 | N1 | sing | 1.35Å | 1.39Å | |
| N1 | C6 | sing | 1.37Å | 1.38Å | |
| C6 | C5 | doub | 1.35Å | 1.34Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| O2 | C2 | doub | 1.22Å | 1.22Å | |
| C2 | N3 | sing | 1.35Å | 1.37Å | |
| N3 | C4 | sing | 1.35Å | 1.38Å | |
| N3 | HN3 | sing | 0.97Å | 1.00Å | |
| C4 | O4 | doub | 1.22Å | 1.22Å | |
| C4 | C5 | sing | 1.42Å | 1.45Å | |
| C5 | C5M | sing | 1.51Å | 1.50Å | |
| C5M | H5M | sing | 1.09Å | 1.10Å | |
| C5M | H5MA | sing | 1.09Å | 1.10Å | |
| C5M | H5MB | sing | 1.09Å | 1.10Å | |
| C2' | C3' | sing | 1.55Å | 1.53Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| C2' | H2'A | sing | 1.09Å | 1.10Å | |
| O3' | C3' | sing | 1.43Å | 1.42Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO3' | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O5' | PA | C3A | 110.7° | 109.5° |
| O5' | PA | O2A | 104.6° | 109.4° |
| O5' | PA | O1A | 103.4° | 109.5° |
| PA | O5' | C5' | 122.0° | 123.0° |
| C3A | PA | O2A | 109.5° | 109.5° |
| C3A | PA | O1A | 110.2° | 109.5° |
| PA | C3A | F1A | 108.5° | 109.5° |
| PA | C3A | PB | 117.8° | 109.5° |
| PA | C3A | F2A | 107.3° | 109.5° |
| O2A | PA | O1A | 118.0° | 109.5° |
| PA | O1A | HO1A | 109.5° | 114.0° |
| F1A | C3A | PB | 107.7° | 109.5° |
| F1A | C3A | F2A | 107.3° | 109.5° |
| PB | C3A | F2A | 107.9° | 109.5° |
| C3A | PB | O1B | 109.7° | 109.5° |
| C3A | PB | O2B | 111.1° | 109.5° |
| C3A | PB | O3B | 105.6° | 109.5° |
| O5' | C5' | C4' | 110.7° | 109.5° |
| O5' | C5' | H5' | 109.1° | 109.5° |
| O5' | C5' | H5'A | 108.8° | 109.5° |
| O1B | PB | O2B | 118.8° | 109.4° |
| O1B | PB | O3B | 104.3° | 109.5° |
| O2B | PB | O3B | 106.3° | 109.5° |
| PB | O2B | HO2B | 109.5° | 113.9° |
| PB | O3B | PG | 128.7° | 134.0° |
| O3B | PG | O2G | 109.1° | 109.5° |
| O3B | PG | O1G | 106.5° | 109.5° |
| O3B | PG | O3G | 107.9° | 109.4° |
| O2G | PG | O1G | 118.7° | 109.5° |
| O2G | PG | O3G | 107.8° | 109.5° |
| O1G | PG | O3G | 106.3° | 109.5° |
| PG | O1G | HO1G | 109.5° | 114.0° |
| PG | O3G | HO3G | 109.5° | 114.0° |
| C4' | C5' | H5' | 109.1° | 109.4° |
| C4' | C5' | H5'A | 108.8° | 109.4° |
| C5' | C4' | C3' | 113.7° | 110.6° |
| C5' | C4' | O4' | 112.0° | 110.6° |
| C5' | C4' | H4' | 103.1° | 110.5° |
| H5' | C5' | H5'A | 110.4° | 109.4° |
| C3' | C4' | O4' | 103.8° | 103.6° |
| C3' | C4' | H4' | 111.4° | 110.6° |
| C4' | C3' | C2' | 101.6° | 102.0° |
| C4' | C3' | O3' | 107.6° | 111.1° |
| C4' | C3' | H3' | 116.9° | 110.8° |
| O4' | C4' | H4' | 113.1° | 110.7° |
| C4' | O4' | C1' | 109.6° | 107.0° |
| O4' | C1' | C2' | 107.0° | 107.3° |
| O4' | C1' | N1 | 109.1° | 109.8° |
| O4' | C1' | H1' | 112.5° | 109.9° |
| C2' | C1' | N1 | 112.7° | 109.9° |
| C2' | C1' | H1' | 108.9° | 110.0° |
| C1' | C2' | C3' | 101.6° | 104.3° |
| C1' | C2' | H2' | 112.2° | 110.5° |
| C1' | C2' | H2'A | 113.8° | 110.4° |
| N1 | C1' | H1' | 106.8° | 109.9° |
| C1' | N1 | C2 | 118.7° | 119.7° |
| C1' | N1 | C6 | 120.4° | 119.7° |
| C2 | N1 | C6 | 120.9° | 120.6° |
| N1 | C2 | O2 | 123.6° | 119.5° |
| N1 | C2 | N3 | 114.5° | 120.9° |
| N1 | C6 | C5 | 124.1° | 119.7° |
| N1 | C6 | H6 | 118.0° | 120.1° |
| C5 | C6 | H6 | 118.0° | 120.1° |
| C6 | C5 | C4 | 117.8° | 119.1° |
| C6 | C5 | C5M | 122.2° | 120.5° |
| O2 | C2 | N3 | 121.8° | 119.5° |
| C2 | N3 | C4 | 127.3° | 120.2° |
| C2 | N3 | HN3 | 116.3° | 119.8° |
| C4 | N3 | HN3 | 116.3° | 120.0° |
| N3 | C4 | O4 | 119.6° | 120.2° |
| N3 | C4 | C5 | 115.4° | 119.4° |
| O4 | C4 | C5 | 125.0° | 120.3° |
| C4 | C5 | C5M | 118.8° | 120.4° |
| C5 | C5M | H5M | 109.5° | 109.4° |
| C5 | C5M | H5MA | 109.5° | 109.5° |
| C5 | C5M | H5MB | 109.5° | 109.5° |
| H5M | C5M | H5MA | 109.5° | 109.5° |
| H5M | C5M | H5MB | 109.5° | 109.5° |
| H5MA | C5M | H5MB | 109.5° | 109.5° |
| C3' | C2' | H2' | 112.2° | 110.4° |
| C3' | C2' | H2'A | 113.8° | 110.6° |
| C2' | C3' | O3' | 113.4° | 110.9° |
| C2' | C3' | H3' | 111.5° | 110.9° |
| H2' | C2' | H2'A | 103.6° | 110.5° |
| O3' | C3' | H3' | 106.0° | 110.9° |
| C3' | O3' | HO3' | 109.5° | 113.9° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O5' | PA | C3A | O2A | 114.8° | 120.0° |
| O5' | PA | C3A | O1A | 113.8° | 120.0° |
| O5' | PA | O2A | O1A | 114.2° | 120.0° |
| O5' | PA | O1A | HO1A | 142.9° | 60.0° |
| O5' | PA | C3A | F1A | 51.5° | 60.0° |
| O5' | PA | C3A | PB | 71.1° | 180.0° |
| O5' | PA | C3A | F2A | 167.1° | 60.0° |
| PA | O5' | C5' | C4' | 139.8° | 180.0° |
| PA | O5' | C5' | H5' | 19.8° | 60.0° |
| PA | O5' | C5' | H5'A | 100.7° | 60.0° |
| C3A | PA | O2A | O1A | 127.1° | 120.0° |
| C3A | PA | O1A | HO1A | 98.7° | 60.0° |
| PA | C3A | F1A | PB | 128.5° | 120.0° |
| PA | C3A | F1A | F2A | 115.6° | 120.0° |
| PA | C3A | PB | F2A | 121.5° | 120.0° |
| C3A | PA | O5' | C5' | 64.1° | 175.0° |
| PA | C3A | PB | O1B | 122.2° | 60.0° |
| PA | C3A | PB | O2B | 11.1° | 60.0° |
| PA | C3A | PB | O3B | 125.9° | 180.0° |
| O2A | PA | O1A | HO1A | 28.1° | 180.0° |
| O2A | PA | C3A | F1A | 63.3° | 180.0° |
| O2A | PA | C3A | PB | 174.1° | 60.0° |
| O2A | PA | C3A | F2A | 52.3° | 60.0° |
| O2A | PA | O5' | C5' | 178.1° | 55.0° |
| O1A | PA | C3A | F1A | 165.2° | 60.0° |
| O1A | PA | C3A | PB | 42.7° | 60.0° |
| O1A | PA | C3A | F2A | 79.2° | 180.0° |
| O1A | PA | O5' | C5' | 53.9° | 65.0° |
| F1A | C3A | PB | F2A | 115.5° | 120.0° |
| F1A | C3A | PB | O1B | 0.7° | 60.0° |
| F1A | C3A | PB | O2B | 134.1° | 180.0° |
| F1A | C3A | PB | O3B | 111.1° | 60.0° |
| C3A | PB | O1B | O2B | 129.3° | 120.0° |
| C3A | PB | O1B | O3B | 112.7° | 120.0° |
| C3A | PB | O2B | O3B | 114.4° | 120.0° |
| C3A | PB | O2B | HO2B | 58.1° | 60.0° |
| C3A | PB | O3B | PG | 71.6° | 180.0° |
| F2A | C3A | PB | O1B | 116.2° | 180.0° |
| F2A | C3A | PB | O2B | 110.4° | 60.0° |
| F2A | C3A | PB | O3B | 4.4° | 60.0° |
| O5' | C5' | C4' | H5' | 120.0° | 120.0° |
| O5' | C5' | C4' | H5'A | 119.5° | 120.0° |
| O5' | C5' | H5' | H5'A | 119.5° | 120.1° |
| O5' | C5' | C4' | C3' | 77.0° | 177.2° |
| O5' | C5' | C4' | O4' | 40.3° | 68.6° |
| O5' | C5' | C4' | H4' | 162.3° | 54.3° |
| O1B | PB | O2B | O3B | 116.9° | 120.0° |
| O1B | PB | O2B | HO2B | 173.3° | 180.0° |
| O1B | PB | O3B | PG | 172.8° | 60.0° |
| O2B | PB | O3B | PG | 46.5° | 60.0° |
| O3B | PB | O2B | HO2B | 56.3° | 60.0° |
| PB | O3B | PG | O2G | 101.1° | 40.0° |
| PB | O3B | PG | O1G | 129.7° | 160.0° |
| PB | O3B | PG | O3G | 15.9° | 80.0° |
| O3B | PG | O2G | O1G | 122.1° | 120.0° |
| O3B | PG | O2G | O3G | 117.0° | 120.0° |
| O3B | PG | O1G | O3G | 114.9° | 120.0° |
| O3B | PG | O1G | HO1G | 0.0° | 180.0° |
| O3B | PG | O3G | HO3G | 170.8° | 60.0° |
| O2G | PG | O1G | O3G | 121.6° | 120.0° |
| O2G | PG | O1G | HO1G | 123.5° | 60.0° |
| O2G | PG | O3G | HO3G | 71.5° | 180.0° |
| O1G | PG | O3G | HO3G | 56.9° | 60.0° |
| O3G | PG | O1G | HO1G | 114.9° | 60.0° |
| C4' | C5' | H5' | H5'A | 119.5° | 119.9° |
| C5' | C4' | C3' | O4' | 122.0° | 118.6° |
| C5' | C4' | C3' | H4' | 116.0° | 122.8° |
| C5' | C4' | O4' | H4' | 116.0° | 122.8° |
| C5' | C4' | O4' | C1' | 148.3° | 158.6° |
| C5' | C4' | C3' | C2' | 160.9° | 155.4° |
| C5' | C4' | C3' | O3' | 79.8° | 86.4° |
| C5' | C4' | C3' | H3' | 39.2° | 37.4° |
| H5' | C5' | C4' | C3' | 43.0° | 62.8° |
| H5' | C5' | C4' | O4' | 160.3° | 51.4° |
| H5' | C5' | C4' | H4' | 77.7° | 174.4° |
| H5'A | C5' | C4' | C3' | 163.5° | 57.1° |
| H5'A | C5' | C4' | O4' | 79.1° | 171.4° |
| H5'A | C5' | C4' | H4' | 42.8° | 65.7° |
| C3' | C4' | O4' | H4' | 120.9° | 118.6° |
| C3' | C4' | O4' | C1' | 25.3° | 40.0° |
| C4' | C3' | C2' | C1' | 37.5° | 20.7° |
| C4' | C3' | C2' | O3' | 115.2° | 118.4° |
| C4' | C3' | C2' | H3' | 125.3° | 118.0° |
| C4' | C3' | C2' | H2' | 82.5° | 98.0° |
| C4' | C3' | C2' | H2'A | 160.2° | 139.4° |
| C4' | C3' | O3' | H3' | 125.8° | 123.7° |
| C4' | C3' | O3' | HO3' | 107.1° | 174.2° |
| C4' | O4' | C1' | C2' | 0.9° | 26.6° |
| C4' | O4' | C1' | N1 | 123.0° | 145.9° |
| C4' | O4' | C1' | H1' | 118.7° | 93.0° |
| O4' | C4' | C3' | C2' | 38.9° | 36.8° |
| O4' | C4' | C3' | O3' | 158.3° | 155.1° |
| O4' | C4' | C3' | H3' | 82.7° | 81.2° |
| H4' | C4' | O4' | C1' | 95.7° | 78.6° |
| H4' | C4' | C3' | C2' | 83.2° | 81.8° |
| H4' | C4' | C3' | O3' | 36.2° | 36.4° |
| H4' | C4' | C3' | H3' | 155.2° | 160.1° |
| O4' | C1' | C2' | N1 | 119.9° | 119.4° |
| O4' | C1' | C2' | H1' | 121.8° | 119.6° |
| O4' | C1' | N1 | H1' | 121.8° | 121.1° |
| O4' | C1' | N1 | C2 | 152.9° | 53.2° |
| O4' | C1' | N1 | C6 | 28.8° | 126.5° |
| O4' | C1' | C2' | C3' | 23.4° | 2.2° |
| O4' | C1' | C2' | H2' | 96.7° | 120.8° |
| O4' | C1' | C2' | H2'A | 146.1° | 116.6° |
| C2' | C1' | N1 | H1' | 119.6° | 121.2° |
| C2' | C1' | N1 | C2 | 88.5° | 64.6° |
| C2' | C1' | N1 | C6 | 89.9° | 115.8° |
| C1' | C2' | C3' | H2' | 120.0° | 118.6° |
| C1' | C2' | C3' | H2'A | 122.8° | 118.7° |
| C1' | C2' | H2' | H2'A | 123.2° | 122.5° |
| C1' | C2' | C3' | O3' | 152.6° | 139.0° |
| C1' | C2' | C3' | H3' | 87.8° | 97.3° |
| C1' | N1 | C2 | C6 | 178.3° | 179.7° |
| C1' | N1 | C6 | C5 | 175.6° | 180.0° |
| C1' | N1 | C6 | H6 | 4.4° | 0.0° |
| C1' | N1 | C2 | O2 | 4.3° | 0.1° |
| C1' | N1 | C2 | N3 | 175.6° | 180.0° |
| N1 | C1' | C2' | C3' | 96.5° | 121.6° |
| N1 | C1' | C2' | H2' | 143.5° | 119.9° |
| N1 | C1' | C2' | H2'A | 26.3° | 2.7° |
| H1' | C1' | N1 | C2 | 31.1° | 174.3° |
| H1' | C1' | N1 | C6 | 150.6° | 5.4° |
| H1' | C1' | C2' | C3' | 145.2° | 117.4° |
| H1' | C1' | C2' | H2' | 25.2° | 1.2° |
| H1' | C1' | C2' | H2'A | 92.1° | 123.8° |
| C2 | N1 | C6 | C5 | 2.8° | 0.3° |
| C2 | N1 | C6 | H6 | 177.3° | 179.7° |
| N1 | C2 | O2 | N3 | 179.9° | 179.9° |
| N1 | C2 | N3 | C4 | 0.1° | 0.1° |
| N1 | C2 | N3 | HN3 | 179.9° | 179.9° |
| N1 | C6 | C5 | H6 | 180.0° | 180.0° |
| C6 | N1 | C2 | O2 | 177.4° | 179.7° |
| C6 | N1 | C2 | N3 | 2.7° | 0.4° |
| N1 | C6 | C5 | C4 | 0.0° | 0.0° |
| N1 | C6 | C5 | C5M | 167.3° | 179.9° |
| C6 | C5 | C4 | N3 | 2.4° | 0.3° |
| C6 | C5 | C4 | O4 | 176.6° | 180.0° |
| C6 | C5 | C4 | C5M | 167.7° | 179.9° |
| C6 | C5 | C5M | H5M | 82.4° | 90.0° |
| C6 | C5 | C5M | H5MA | 157.6° | 150.0° |
| C6 | C5 | C5M | H5MB | 37.6° | 30.0° |
| H6 | C6 | C5 | C4 | 180.0° | 180.0° |
| H6 | C6 | C5 | C5M | 12.7° | 0.0° |
| O2 | C2 | N3 | C4 | 179.9° | 180.0° |
| O2 | C2 | N3 | HN3 | 0.1° | 0.0° |
| C2 | N3 | C4 | HN3 | 180.0° | 180.0° |
| C2 | N3 | C4 | O4 | 176.6° | 180.0° |
| C2 | N3 | C4 | C5 | 2.4° | 0.3° |
| N3 | C4 | O4 | C5 | 179.0° | 179.7° |
| N3 | C4 | C5 | C5M | 170.1° | 179.8° |
| HN3 | N3 | C4 | O4 | 3.4° | 0.0° |
| HN3 | N3 | C4 | C5 | 177.6° | 179.7° |
| O4 | C4 | C5 | C5M | 8.9° | 0.1° |
| C4 | C5 | C5M | H5M | 84.7° | 90.0° |
| C4 | C5 | C5M | H5MA | 35.3° | 29.9° |
| C4 | C5 | C5M | H5MB | 155.3° | 150.0° |
| C5 | C5M | H5M | H5MA | 120.0° | 120.0° |
| C5 | C5M | H5M | H5MB | 120.0° | 120.0° |
| C5 | C5M | H5MA | H5MB | 120.0° | 120.0° |
| H5M | C5M | H5MA | H5MB | 120.0° | 120.0° |
| C3' | C2' | H2' | H2'A | 123.2° | 122.7° |
| C2' | C3' | O3' | H3' | 122.7° | 123.6° |
| C2' | C3' | O3' | HO3' | 4.4° | 61.5° |
| H2' | C2' | C3' | O3' | 32.6° | 20.4° |
| H2' | C2' | C3' | H3' | 152.1° | 144.0° |
| H2'A | C2' | C3' | O3' | 84.6° | 102.2° |
| H2'A | C2' | C3' | H3' | 34.9° | 21.4° |
| H3' | C3' | O3' | HO3' | 127.1° | 62.2° |
