2SG
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O3' | C3' | sing | 1.43Å | 1.41Å | |
| O2' | C2' | sing | 1.43Å | 1.43Å | |
| C2' | C3' | sing | 1.55Å | 1.52Å | |
| C2' | C1' | sing | 1.55Å | 1.53Å | |
| C3' | C4' | sing | 1.54Å | 1.52Å | |
| C4' | C5' | sing | 1.53Å | 1.50Å | |
| C4' | O4' | sing | 1.44Å | 1.45Å | |
| C5' | O5' | sing | 1.43Å | 1.44Å | |
| C1' | O4' | sing | 1.44Å | 1.43Å | |
| C1' | N9 | sing | 1.46Å | 1.44Å | |
| N2 | C2 | sing | 1.37Å | 1.34Å | |
| N3 | C2 | doub | 1.31Å | 1.34Å | |
| N3 | C4 | sing | 1.34Å | 1.34Å | |
| O5' | P | sing | 1.72Å | 1.60Å | |
| N9 | C4 | sing | 1.37Å | 1.38Å | Aromatic |
| N9 | C8 | sing | 1.36Å | 1.37Å | Aromatic |
| C2 | N1 | sing | 1.36Å | 1.34Å | |
| C4 | C5 | doub | 1.40Å | 1.37Å | Aromatic |
| SP1 | P | sing | 2.12Å | 1.93Å | |
| C8 | N7 | doub | 1.30Å | 1.29Å | Aromatic |
| P | SP2 | sing | 2.12Å | 1.94Å | |
| N1 | C6 | sing | 1.35Å | 1.39Å | |
| C5 | N7 | sing | 1.36Å | 1.39Å | Aromatic |
| C5 | C6 | sing | 1.41Å | 1.43Å | |
| C6 | O6 | doub | 1.22Å | 1.23Å | |
| SP1 | H1 | sing | 1.35Å | 1.30Å | |
| SP2 | H2 | sing | 1.34Å | 1.30Å | |
| C5' | H3 | sing | 1.09Å | 1.10Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C4' | H5 | sing | 1.09Å | 1.10Å | |
| C3' | H6 | sing | 1.09Å | 1.10Å | |
| O3' | H7 | sing | 0.97Å | 0.95Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| O2' | H9 | sing | 0.97Å | 0.95Å | |
| C1' | H10 | sing | 1.09Å | 1.10Å | |
| C8 | H11 | sing | 1.08Å | 1.08Å | |
| N2 | H13 | sing | 0.97Å | 1.00Å | |
| N2 | H14 | sing | 0.97Å | 1.00Å | |
| P | OP3 | sing | 1.72Å | 16.39Å | |
| P | H15 | sing | 1.47Å | 16.39Å | |
| N1 | H12 | sing | 0.97Å | 1.00Å | |
| OP3 | H16 | sing | 0.97Å | 0.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O3' | C3' | C2' | 113.6° | 110.6° |
| O3' | C3' | C4' | 110.9° | 110.5° |
| O3' | C3' | H6 | 111.2° | 110.4° |
| C3' | O3' | H7 | 109.5° | 114.0° |
| O2' | C2' | C3' | 108.4° | 110.9° |
| O2' | C2' | C1' | 109.4° | 110.9° |
| O2' | C2' | H8 | 114.0° | 110.8° |
| C2' | O2' | H9 | 109.5° | 114.0° |
| C3' | C2' | C1' | 99.2° | 102.1° |
| C2' | C3' | C4' | 101.5° | 104.2° |
| C2' | C3' | H6 | 109.7° | 110.5° |
| C3' | C2' | H8 | 112.6° | 110.9° |
| C2' | C1' | O4' | 106.3° | 103.5° |
| C2' | C1' | N9 | 112.6° | 110.6° |
| C1' | C2' | H8 | 112.3° | 110.9° |
| C2' | C1' | H10 | 108.7° | 110.6° |
| C3' | C4' | C5' | 117.1° | 109.9° |
| C3' | C4' | O4' | 101.7° | 107.3° |
| C3' | C4' | H5 | 108.5° | 110.0° |
| C4' | C3' | H6 | 109.5° | 110.5° |
| C5' | C4' | O4' | 110.8° | 109.9° |
| C4' | C5' | O5' | 110.4° | 109.5° |
| C4' | C5' | H3 | 109.2° | 109.5° |
| C4' | C5' | H4 | 109.2° | 109.5° |
| C5' | C4' | H5 | 108.8° | 109.9° |
| C4' | O4' | C1' | 109.7° | 107.0° |
| O4' | C4' | H5 | 109.4° | 109.9° |
| C5' | O5' | P | 120.6° | 114.0° |
| O5' | C5' | H3 | 109.3° | 109.5° |
| O5' | C5' | H4 | 109.3° | 109.5° |
| O4' | C1' | N9 | 109.1° | 110.6° |
| O4' | C1' | H10 | 110.2° | 110.6° |
| C1' | N9 | C4 | 125.7° | 126.3° |
| C1' | N9 | C8 | 128.2° | 126.3° |
| N9 | C1' | H10 | 109.9° | 110.7° |
| N2 | C2 | N3 | 118.6° | 119.0° |
| N2 | C2 | N1 | 115.6° | 119.0° |
| C2 | N2 | H13 | 120.0° | 120.0° |
| C2 | N2 | H14 | 120.0° | 120.0° |
| C2 | N3 | C4 | 108.4° | 121.1° |
| N3 | C2 | N1 | 125.6° | 121.9° |
| N3 | C4 | N9 | 122.8° | 134.2° |
| N3 | C4 | C5 | 131.6° | 119.7° |
| O5' | P | SP1 | 109.7° | 90.0° |
| O5' | P | SP2 | 105.9° | 90.0° |
| O5' | P | OP3 | 8.1° | 120.0° |
| O5' | P | H15 | 8.1° | 120.0° |
| C4 | N9 | C8 | 106.0° | 107.4° |
| N9 | C4 | C5 | 105.6° | 106.1° |
| N9 | C8 | N7 | 113.2° | 109.9° |
| N9 | C8 | H11 | 123.4° | 125.1° |
| C2 | N1 | C6 | 126.2° | 120.3° |
| C2 | N1 | H12 | 116.9° | 119.9° |
| C4 | C5 | N7 | 110.7° | 107.3° |
| C4 | C5 | C6 | 118.2° | 118.6° |
| SP1 | P | SP2 | 120.3° | NaN° |
| P | SP1 | H1 | 102.0° | 103.0° |
| SP1 | P | OP3 | 111.7° | 90.0° |
| SP1 | P | H15 | 111.7° | 90.0° |
| C8 | N7 | C5 | 104.5° | 109.3° |
| N7 | C8 | H11 | 123.4° | 125.0° |
| P | SP2 | H2 | 102.0° | 103.0° |
| SP2 | P | OP3 | 110.2° | 90.0° |
| SP2 | P | H15 | 110.2° | 90.0° |
| N1 | C6 | C5 | 110.0° | 118.4° |
| N1 | C6 | O6 | 122.4° | 120.8° |
| C6 | N1 | H12 | 116.9° | 119.8° |
| N7 | C5 | C6 | 131.1° | 134.1° |
| C5 | C6 | O6 | 127.5° | 120.8° |
| H3 | C5' | H4 | 109.5° | 109.5° |
| H13 | N2 | H14 | 120.0° | 120.0° |
| OP3 | P | H15 | NaN° | 120.0° |
| P | OP3 | H16 | 90.0° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O3' | C3' | C2' | O2' | 49.5° | 20.4° |
| O3' | C3' | C2' | C4' | 119.1° | 118.7° |
| O3' | C3' | C2' | H6 | 125.1° | 122.6° |
| O3' | C3' | C2' | C1' | 163.6° | 97.9° |
| O3' | C3' | C4' | H6 | 123.1° | 122.5° |
| O3' | C3' | C4' | C5' | 75.5° | 119.7° |
| O3' | C3' | C4' | O4' | 163.6° | 120.9° |
| O3' | C3' | C4' | H5 | 48.2° | 1.4° |
| O3' | C3' | C2' | H8 | 77.5° | 143.9° |
| O2' | C2' | C3' | C1' | 114.1° | 118.2° |
| O2' | C2' | C3' | H8 | 127.0° | 123.5° |
| O2' | C2' | C1' | H8 | 127.6° | 123.6° |
| O2' | C2' | C3' | C4' | 69.6° | 139.1° |
| O2' | C2' | C1' | O4' | 82.2° | 155.2° |
| O2' | C2' | C1' | N9 | 158.4° | 86.3° |
| O2' | C2' | C3' | H6 | 174.6° | 102.2° |
| O2' | C2' | C1' | H10 | 36.4° | 36.7° |
| C3' | C2' | C1' | H8 | 119.1° | 118.2° |
| C2' | C3' | C4' | H6 | 115.9° | 118.7° |
| C2' | C3' | C4' | C5' | 163.6° | 121.4° |
| C2' | C3' | C4' | O4' | 42.6° | 2.0° |
| C3' | C2' | C1' | O4' | 31.1° | 37.0° |
| C3' | C2' | C1' | N9 | 88.3° | 155.6° |
| C2' | C3' | C4' | H5 | 72.8° | 117.5° |
| C2' | C3' | O3' | H7 | 180.0° | 65.1° |
| C3' | C2' | O2' | H9 | 180.0° | 61.5° |
| C3' | C2' | C1' | H10 | 149.6° | 81.5° |
| C1' | C2' | C3' | C4' | 44.5° | 20.9° |
| C2' | C1' | O4' | C4' | 5.0° | 40.1° |
| C2' | C1' | O4' | N9 | 121.6° | 118.5° |
| C2' | C1' | O4' | H10 | 117.6° | 118.5° |
| C2' | C1' | N9 | H10 | 121.4° | 122.9° |
| C2' | C1' | N9 | C4 | 79.7° | 85.0° |
| C2' | C1' | N9 | C8 | 97.5° | 95.3° |
| C1' | C2' | C3' | H6 | 71.3° | 139.6° |
| C1' | C2' | O2' | H9 | 72.8° | 174.2° |
| C3' | C4' | C5' | O4' | 116.1° | 117.8° |
| C3' | C4' | C5' | H5 | 123.5° | 121.2° |
| C3' | C4' | O4' | H5 | 114.7° | 119.6° |
| C3' | C4' | C5' | O5' | 58.4° | 175.7° |
| C3' | C4' | O4' | C1' | 23.3° | 26.5° |
| C3' | C4' | C5' | H3 | 178.5° | 64.3° |
| C3' | C4' | C5' | H4 | 61.7° | 55.7° |
| C4' | C3' | O3' | H7 | 66.4° | 180.0° |
| C4' | C3' | C2' | H8 | 163.4° | 97.4° |
| C5' | C4' | O4' | H5 | 120.0° | 121.0° |
| C4' | C5' | O5' | H3 | 120.1° | 120.0° |
| C4' | C5' | O5' | H4 | 120.1° | 120.0° |
| C5' | C4' | O4' | C1' | 148.6° | 145.9° |
| C4' | C5' | O5' | P | 141.8° | 180.0° |
| C4' | C5' | H3 | H4 | 119.6° | 120.0° |
| C5' | C4' | C3' | H6 | 47.7° | 2.8° |
| O4' | C4' | C5' | O5' | 57.7° | 66.5° |
| C4' | O4' | C1' | N9 | 116.7° | 158.6° |
| O4' | C4' | C5' | H3 | 62.5° | 53.5° |
| O4' | C4' | C5' | H4 | 177.8° | 173.5° |
| O4' | C4' | C3' | H6 | 73.3° | 116.6° |
| C4' | O4' | C1' | H10 | 122.6° | 78.4° |
| C5' | O5' | P | SP1 | 45.7° | 90.0° |
| C5' | O5' | P | SP2 | 177.0° | 90.0° |
| O5' | C5' | H3 | H4 | 119.6° | 120.0° |
| O5' | C5' | C4' | H5 | 178.1° | 54.5° |
| C5' | O5' | P | OP3 | 59.8° | 180.0° |
| C5' | O5' | P | H15 | 59.8° | 0.0° |
| O4' | C1' | N9 | H10 | 120.9° | 123.0° |
| O4' | C1' | N9 | C4 | 162.6° | 160.9° |
| O4' | C1' | N9 | C8 | 20.2° | 18.8° |
| C1' | O4' | C4' | H5 | 91.4° | 93.1° |
| O4' | C1' | C2' | H8 | 150.2° | 81.2° |
| C1' | N9 | C4 | N3 | 0.9° | 0.0° |
| C1' | N9 | C4 | C8 | 177.7° | 179.7° |
| C1' | N9 | C4 | C5 | 178.1° | 180.0° |
| C1' | N9 | C8 | N7 | 178.0° | 179.9° |
| N9 | C1' | C2' | H8 | 30.8° | 37.4° |
| C1' | N9 | C8 | H11 | 2.0° | 0.0° |
| N2 | C2 | N3 | N1 | 176.5° | 180.0° |
| N2 | C2 | N3 | C4 | 176.3° | 180.0° |
| N2 | C2 | N1 | C6 | 177.4° | 179.9° |
| C2 | N2 | H13 | H14 | 180.0° | 180.0° |
| N2 | C2 | N1 | H12 | 2.5° | 0.0° |
| C2 | N3 | C4 | N9 | 179.6° | 179.9° |
| C2 | N3 | C4 | C5 | 0.9° | 0.0° |
| N3 | C2 | N1 | C6 | 0.9° | 0.0° |
| N3 | C2 | N2 | H13 | 0.0° | 0.0° |
| N3 | C2 | N2 | H14 | 180.0° | 180.0° |
| N3 | C2 | N1 | H12 | 179.1° | 179.9° |
| N3 | C4 | N9 | C5 | 179.0° | 180.0° |
| N3 | C4 | N9 | C8 | 178.7° | 179.8° |
| C4 | N3 | C2 | N1 | 0.1° | 0.0° |
| N3 | C4 | C5 | N7 | 178.6° | 180.0° |
| N3 | C4 | C5 | C6 | 2.8° | 0.1° |
| O5' | P | SP1 | SP2 | 123.2° | 10.4° |
| O5' | P | SP1 | OP3 | 8.4° | 120.0° |
| O5' | P | SP1 | H15 | 8.4° | 120.0° |
| O5' | P | SP2 | OP3 | 7.2° | 120.0° |
| O5' | P | SP2 | H15 | 7.2° | 120.0° |
| O5' | P | SP1 | H1 | 180.0° | 60.0° |
| O5' | P | SP2 | H2 | 180.0° | 60.0° |
| P | O5' | C5' | H3 | 21.7° | 60.0° |
| P | O5' | C5' | H4 | 98.1° | 60.0° |
| O5' | P | OP3 | H15 | 90.0° | 180.0° |
| O5' | P | OP3 | H16 | 90.0° | 180.0° |
| C4 | N9 | C8 | N7 | 0.3° | 0.4° |
| N9 | C4 | C5 | N7 | 0.3° | 0.1° |
| N9 | C4 | C5 | C6 | 178.3° | 180.0° |
| C4 | N9 | C1' | H10 | 41.7° | 37.9° |
| C4 | N9 | C8 | H11 | 179.7° | 179.7° |
| C8 | N9 | C4 | C5 | 0.3° | 0.3° |
| N9 | C8 | N7 | H11 | 180.0° | 179.9° |
| N9 | C8 | N7 | C5 | 0.2° | 0.4° |
| C8 | N9 | C1' | H10 | 141.1° | 141.7° |
| C2 | N1 | C6 | H12 | 180.0° | 179.9° |
| C2 | N1 | C6 | C5 | 2.5° | 0.1° |
| C2 | N1 | C6 | O6 | 179.9° | 180.0° |
| N1 | C2 | N2 | H13 | 176.8° | 180.0° |
| N1 | C2 | N2 | H14 | 3.2° | 0.0° |
| C4 | C5 | N7 | C8 | 0.1° | 0.2° |
| C4 | C5 | C6 | N1 | 3.1° | 0.1° |
| C4 | C5 | N7 | C6 | 178.3° | 179.9° |
| C4 | C5 | C6 | O6 | 179.4° | 180.0° |
| SP1 | P | SP2 | OP3 | 132.2° | 126.7° |
| SP1 | P | SP2 | H15 | 132.2° | 113.0° |
| SP1 | P | SP2 | H2 | 55.0° | 53.3° |
| SP1 | P | OP3 | H15 | 90.0° | 90.0° |
| SP1 | P | OP3 | H16 | 90.0° | 90.0° |
| C8 | N7 | C5 | C6 | 178.3° | 179.7° |
| SP2 | P | SP1 | H1 | 56.8° | 46.9° |
| SP2 | P | OP3 | H15 | 90.0° | 90.0° |
| SP2 | P | OP3 | H16 | 90.0° | 90.0° |
| N1 | C6 | C5 | N7 | 178.6° | 180.0° |
| N1 | C6 | C5 | O6 | 177.5° | 179.9° |
| N7 | C5 | C6 | O6 | 1.2° | 0.1° |
| C5 | N7 | C8 | H11 | 179.8° | 179.7° |
| C5 | C6 | N1 | H12 | 177.5° | 180.0° |
| O6 | C6 | N1 | H12 | 0.1° | 0.1° |
| H1 | SP1 | P | OP3 | 171.6° | 180.0° |
| H1 | SP1 | P | H15 | 171.6° | 60.0° |
| H2 | SP2 | P | OP3 | 172.8° | 180.0° |
| H2 | SP2 | P | H15 | 172.8° | 60.0° |
| H3 | C5' | C4' | H5 | 57.9° | 174.5° |
| H4 | C5' | C4' | H5 | 61.8° | 65.5° |
| H5 | C4' | C3' | H6 | 171.3° | 123.9° |
| H6 | C3' | O3' | H7 | 55.7° | 57.5° |
| H6 | C3' | C2' | H8 | 47.6° | 21.3° |
| H8 | C2' | O2' | H9 | 53.8° | 62.1° |
| H8 | C2' | C1' | H10 | 91.3° | 160.3° |
| H15 | P | OP3 | H16 | 90.0° | 0.0° |
