2L4
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| C4 | C4A | sing | 1.47Å | 1.49Å | |
| C4 | N3 | sing | 1.35Å | 1.35Å | |
| C6 | N5 | doub | 1.31Å | 1.26Å | |
| C6 | H1 | sing | 1.08Å | 1.08Å | |
| C7 | C6 | sing | 1.41Å | 1.50Å | |
| C7 | O1 | doub | 1.22Å | 1.43Å | |
| N3 | C2 | sing | 1.34Å | 1.34Å | |
| N3 | H5 | sing | 0.97Å | 1.00Å | |
| N5 | C4A | sing | 1.34Å | 1.40Å | |
| C4A | C8A | doub | 1.41Å | 1.46Å | |
| O4 | C4 | doub | 1.22Å | 1.25Å | |
| C2 | O2 | doub | 1.22Å | 1.24Å | |
| C2 | N1 | sing | 1.34Å | 1.36Å | |
| C8A | N1 | sing | 1.37Å | 1.34Å | |
| C8A | N8 | sing | 1.36Å | 1.34Å | |
| N8 | C1' | sing | 1.46Å | 1.44Å | |
| N8 | H7 | sing | 0.97Å | 1.00Å | |
| C1' | H8 | sing | 1.09Å | 1.10Å | |
| C1' | H9 | sing | 1.09Å | 1.10Å | |
| C2' | C1' | sing | 1.53Å | 1.52Å | |
| C2' | H10 | sing | 1.09Å | 1.10Å | |
| O2' | C2' | sing | 1.43Å | 1.44Å | |
| O2' | H11 | sing | 0.97Å | 0.95Å | |
| C3' | C2' | sing | 1.53Å | 1.54Å | |
| C3' | O3' | sing | 1.43Å | 1.43Å | |
| C3' | H12 | sing | 1.09Å | 1.10Å | |
| O3' | H13 | sing | 0.97Å | 0.95Å | |
| C4' | C3' | sing | 1.53Å | 1.52Å | |
| C4' | C5' | sing | 1.53Å | 1.53Å | |
| C4' | H14 | sing | 1.09Å | 1.10Å | |
| O4' | C4' | sing | 1.43Å | 1.42Å | |
| O4' | H15 | sing | 0.97Å | 0.95Å | |
| C5' | H16 | sing | 1.09Å | 1.10Å | |
| C5' | H17 | sing | 1.09Å | 1.10Å | |
| O5' | C5' | sing | 1.43Å | 1.43Å | |
| O5' | H18 | sing | 0.97Å | 0.95Å | |
| C7 | H2 | sing | 1.08Å | 1.08Å | |
| N1 | H161 | sing | 0.97Å | 1.00Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| C4A | C4 | N3 | 119.2° | 118.6° |
| C4 | C4A | N5 | 125.8° | 121.1° |
| C4 | C4A | C8A | 115.7° | 117.8° |
| C4A | C4 | O4 | 120.4° | 120.7° |
| C4 | N3 | C2 | 121.3° | 120.9° |
| C4 | N3 | H5 | 119.3° | 119.5° |
| N3 | C4 | O4 | 120.4° | 120.7° |
| N5 | C6 | H1 | 119.1° | 120.0° |
| N5 | C6 | C7 | 121.8° | 120.0° |
| C6 | N5 | C4A | 122.3° | 120.0° |
| H1 | C6 | C7 | 119.1° | 120.0° |
| C6 | C7 | O1 | 138.2° | 120.0° |
| C6 | C7 | H2 | 110.9° | 120.1° |
| O1 | C7 | H2 | 110.9° | 120.0° |
| C2 | N3 | H5 | 119.3° | 119.5° |
| N3 | C2 | O2 | 119.3° | 118.7° |
| N3 | C2 | N1 | 122.4° | 122.4° |
| N5 | C4A | C8A | 118.3° | 121.1° |
| C4A | C8A | N1 | 119.1° | 118.9° |
| C4A | C8A | N8 | 117.9° | 120.5° |
| O2 | C2 | N1 | 118.1° | 118.8° |
| C2 | N1 | C8A | 122.1° | 121.3° |
| C2 | N1 | H161 | 118.9° | 119.3° |
| N1 | C8A | N8 | 123.0° | 120.6° |
| C8A | N1 | H161 | 118.9° | 119.4° |
| C8A | N8 | C1' | 123.7° | 120.0° |
| C8A | N8 | H7 | 105.8° | 120.0° |
| C1' | N8 | H7 | 105.8° | 120.0° |
| N8 | C1' | H8 | 109.2° | 109.5° |
| N8 | C1' | H9 | 109.2° | 109.5° |
| N8 | C1' | C2' | 110.4° | 109.5° |
| H8 | C1' | H9 | 109.5° | 109.4° |
| H8 | C1' | C2' | 109.2° | 109.4° |
| H9 | C1' | C2' | 109.2° | 109.5° |
| C1' | C2' | H10 | 105.9° | 109.5° |
| C1' | C2' | O2' | 110.8° | 109.5° |
| C1' | C2' | C3' | 114.4° | 109.4° |
| H10 | C2' | O2' | 106.8° | 109.5° |
| H10 | C2' | C3' | 105.7° | 109.5° |
| C2' | O2' | H11 | 109.5° | 114.0° |
| O2' | C2' | C3' | 112.4° | 109.5° |
| C2' | C3' | O3' | 112.5° | 109.5° |
| C2' | C3' | H12 | 107.5° | 109.5° |
| C2' | C3' | C4' | 111.8° | 109.4° |
| O3' | C3' | H12 | 108.8° | 109.5° |
| C3' | O3' | H13 | 109.5° | 114.0° |
| O3' | C3' | C4' | 108.3° | 109.5° |
| H12 | C3' | C4' | 107.8° | 109.4° |
| C3' | C4' | C5' | 113.6° | 109.5° |
| C3' | C4' | H14 | 107.5° | 109.5° |
| C3' | C4' | O4' | 107.8° | 109.5° |
| C5' | C4' | H14 | 107.3° | 109.5° |
| C5' | C4' | O4' | 111.8° | 109.5° |
| C4' | C5' | H16 | 109.2° | 109.5° |
| C4' | C5' | H17 | 109.2° | 109.5° |
| C4' | C5' | O5' | 110.5° | 109.5° |
| H14 | C4' | O4' | 108.6° | 109.5° |
| C4' | O4' | H15 | 109.5° | 114.0° |
| H16 | C5' | H17 | 109.5° | 109.5° |
| H16 | C5' | O5' | 109.2° | 109.5° |
| H17 | C5' | O5' | 109.2° | 109.5° |
| C5' | O5' | H18 | 109.5° | 114.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| C4A | C4 | N3 | O4 | 178.7° | 179.8° |
| C4 | C4A | N5 | C6 | 4.6° | 48.1° |
| C4A | C4 | N3 | C2 | 3.1° | 0.1° |
| C4A | C4 | N3 | H5 | 176.9° | 180.0° |
| C4 | C4A | N5 | C8A | 175.5° | 179.9° |
| C4 | C4A | C8A | N1 | 0.9° | 0.0° |
| C4 | C4A | C8A | N8 | 177.1° | 180.0° |
| C4 | N3 | C2 | H5 | 180.0° | 179.9° |
| N3 | C4 | C4A | N5 | 177.2° | 180.0° |
| N3 | C4 | C4A | C8A | 1.6° | 0.1° |
| C4 | N3 | C2 | O2 | 177.7° | 180.0° |
| C4 | N3 | C2 | N1 | 3.9° | 0.1° |
| N5 | C6 | H1 | C7 | 180.0° | 180.0° |
| N5 | C6 | C7 | O1 | 114.9° | 180.0° |
| C6 | N5 | C4A | C8A | 170.9° | 132.0° |
| N5 | C6 | C7 | H2 | 65.1° | 0.0° |
| H1 | C6 | C7 | O1 | 65.1° | 0.0° |
| H1 | C6 | N5 | C4A | 1.3° | 4.8° |
| H1 | C6 | C7 | H2 | 114.9° | 180.0° |
| C6 | C7 | O1 | H2 | 180.0° | 179.9° |
| C7 | C6 | N5 | C4A | 178.7° | 175.2° |
| C2 | N3 | C4 | O4 | 175.6° | 179.7° |
| N3 | C2 | O2 | N1 | 174.0° | 180.0° |
| N3 | C2 | N1 | C8A | 3.2° | 0.0° |
| N3 | C2 | N1 | H161 | 176.9° | 179.9° |
| H5 | N3 | C4 | O4 | 4.4° | 0.3° |
| H5 | N3 | C2 | O2 | 2.3° | 0.0° |
| H5 | N3 | C2 | N1 | 176.1° | 180.0° |
| N5 | C4A | C4 | O4 | 1.5° | 0.2° |
| N5 | C4A | C8A | N1 | 176.9° | 180.0° |
| N5 | C4A | C8A | N8 | 1.2° | 0.1° |
| C8A | C4A | C4 | O4 | 177.0° | 179.7° |
| C4A | C8A | N1 | C2 | 1.7° | 0.0° |
| C4A | C8A | N1 | N8 | 178.0° | 179.9° |
| C4A | C8A | N8 | C1' | 152.8° | 180.0° |
| C4A | C8A | N8 | H7 | 85.3° | 0.1° |
| C4A | C8A | N1 | H161 | 178.4° | 179.9° |
| O2 | C2 | N1 | C8A | 177.0° | 180.0° |
| O2 | C2 | N1 | H161 | 3.0° | 0.1° |
| C2 | N1 | C8A | H161 | 180.0° | 179.9° |
| C2 | N1 | C8A | N8 | 176.3° | 180.0° |
| N1 | C8A | N8 | C1' | 25.2° | 0.0° |
| N1 | C8A | N8 | H7 | 96.7° | 180.0° |
| C8A | N8 | C1' | H7 | 122.0° | 179.9° |
| C8A | N8 | C1' | H8 | 136.5° | 60.0° |
| C8A | N8 | C1' | H9 | 16.7° | 60.0° |
| C8A | N8 | C1' | C2' | 103.4° | 180.0° |
| N8 | C8A | N1 | H161 | 3.7° | 0.0° |
| N8 | C1' | H8 | H9 | 119.6° | 120.0° |
| N8 | C1' | H8 | C2' | 120.9° | 120.0° |
| N8 | C1' | H9 | C2' | 120.9° | 120.0° |
| N8 | C1' | C2' | H10 | 173.9° | 60.0° |
| N8 | C1' | C2' | O2' | 58.4° | 60.0° |
| N8 | C1' | C2' | C3' | 70.0° | 180.0° |
| H7 | N8 | C1' | H8 | 101.6° | 120.0° |
| H7 | N8 | C1' | H9 | 138.7° | 120.0° |
| H7 | N8 | C1' | C2' | 18.6° | 0.1° |
| H8 | C1' | H9 | C2' | 119.6° | 120.0° |
| H8 | C1' | C2' | H10 | 53.8° | 60.0° |
| H8 | C1' | C2' | O2' | 61.8° | 180.0° |
| H8 | C1' | C2' | C3' | 169.9° | 60.0° |
| H9 | C1' | C2' | H10 | 66.0° | 180.0° |
| H9 | C1' | C2' | O2' | 178.5° | 60.0° |
| H9 | C1' | C2' | C3' | 50.1° | 60.0° |
| C1' | C2' | H10 | O2' | 118.2° | 120.0° |
| C1' | C2' | H10 | C3' | 121.8° | 120.0° |
| C1' | C2' | O2' | C3' | 129.5° | 119.9° |
| C1' | C2' | O2' | H11 | 180.0° | 60.0° |
| C1' | C2' | C3' | O3' | 46.5° | 60.0° |
| C1' | C2' | C3' | H12 | 73.3° | 60.0° |
| C1' | C2' | C3' | C4' | 168.6° | 180.0° |
| H10 | C2' | O2' | C3' | 115.6° | 120.1° |
| H10 | C2' | O2' | H11 | 65.0° | 180.0° |
| H10 | C2' | C3' | O3' | 69.7° | 60.0° |
| H10 | C2' | C3' | H12 | 170.5° | 180.0° |
| H10 | C2' | C3' | C4' | 52.4° | 60.0° |
| O2' | C2' | C3' | O3' | 174.0° | 180.0° |
| O2' | C2' | C3' | H12 | 54.3° | 59.9° |
| O2' | C2' | C3' | C4' | 63.8° | 60.0° |
| H11 | O2' | C2' | C3' | 50.5° | 60.0° |
| C2' | C3' | O3' | H12 | 119.0° | 120.0° |
| C2' | C3' | O3' | C4' | 124.1° | 120.0° |
| C2' | C3' | H12 | C4' | 120.7° | 119.9° |
| C2' | C3' | O3' | H13 | 180.0° | 60.0° |
| C2' | C3' | C4' | C5' | 62.8° | 180.0° |
| C2' | C3' | C4' | H14 | 55.8° | 60.0° |
| C2' | C3' | C4' | O4' | 172.6° | 60.0° |
| O3' | C3' | H12 | C4' | 117.3° | 120.0° |
| O3' | C3' | C4' | C5' | 61.7° | 60.0° |
| O3' | C3' | C4' | H14 | 179.8° | 60.0° |
| O3' | C3' | C4' | O4' | 62.9° | 180.0° |
| H12 | C3' | O3' | H13 | 61.0° | 180.0° |
| H12 | C3' | C4' | C5' | 179.3° | 60.0° |
| H12 | C3' | C4' | H14 | 62.2° | 180.0° |
| H12 | C3' | C4' | O4' | 54.7° | 60.0° |
| H13 | O3' | C3' | C4' | 55.9° | 60.0° |
| C3' | C4' | C5' | H14 | 118.6° | 120.0° |
| C3' | C4' | C5' | O4' | 122.4° | 120.0° |
| C3' | C4' | H14 | O4' | 116.4° | 120.0° |
| C3' | C4' | O4' | H15 | 180.0° | 60.0° |
| C3' | C4' | C5' | H16 | 63.0° | 55.0° |
| C3' | C4' | C5' | H17 | 56.7° | 65.0° |
| C3' | C4' | C5' | O5' | 176.8° | 175.0° |
| C5' | C4' | H14 | O4' | 121.1° | 120.0° |
| C5' | C4' | O4' | H15 | 54.4° | 60.0° |
| C4' | C5' | H16 | H17 | 119.5° | 120.0° |
| C4' | C5' | H16 | O5' | 120.9° | 120.0° |
| C4' | C5' | H17 | O5' | 120.9° | 120.0° |
| C4' | C5' | O5' | H18 | 180.0° | 180.0° |
| H14 | C4' | O4' | H15 | 63.8° | 180.0° |
| H14 | C4' | C5' | H16 | 55.6° | 65.0° |
| H14 | C4' | C5' | H17 | 175.3° | 175.0° |
| H14 | C4' | C5' | O5' | 64.5° | 55.0° |
| O4' | C4' | C5' | H16 | 174.6° | 175.0° |
| O4' | C4' | C5' | H17 | 65.7° | 55.0° |
| O4' | C4' | C5' | O5' | 54.5° | 65.0° |
| H16 | C5' | H17 | O5' | 119.6° | 120.0° |
| H16 | C5' | O5' | H18 | 59.8° | 60.0° |
| H17 | C5' | O5' | H18 | 59.9° | 60.0° |
