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2JU

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O2C2doub1.22Å1.25Å
C26C27doub1.36Å1.40ÅAromatic
C26C25sing1.39Å1.40ÅAromatic
N3C2sing1.34Å1.33Å
N3C4sing1.35Å1.34Å
C2N1sing1.34Å1.34Å
C27C28sing1.41Å1.40ÅAromatic
O4C4doub1.22Å1.27Å
C2'C1'sing1.54Å1.52Å
C2'C3'sing1.55Å1.51Å
C4C5sing1.47Å1.40Å
C25C24doub1.36Å1.40ÅAromatic
N1C1'sing1.47Å1.46Å
N1C6sing1.36Å1.35Å
C1'O4'sing1.45Å1.43Å
C5C6doub1.38Å1.39Å
C5C5Msing1.47Å1.50Å
O3'C3'sing1.43Å1.44Å
C3'C4'sing1.54Å1.50Å
C28C33doub1.40Å1.39ÅAromatic
C28C29sing1.42Å1.41ÅAromatic
C33C32sing1.36Å1.41ÅAromatic
C24C29sing1.40Å1.41ÅAromatic
C24C23sing1.51Å1.52Å
C5MN22sing1.35Å1.33Å
C5MO21doub1.22Å1.22Å
N22C23sing1.47Å1.44Å
C29C30doub1.41Å1.41ÅAromatic
O4'C4'sing1.44Å1.44Å
C4'C5'sing1.53Å1.50Å
O5'C5'sing1.43Å1.42Å
O5'Psing1.61Å1.70Å
C32C31doub1.39Å1.40ÅAromatic
C30C31sing1.36Å1.40ÅAromatic
O2PPsing1.61Å1.66Å
PO1Pdoub1.48Å1.66Å
O2PH2sing0.97Å0.95Å
C5'H3sing1.09Å1.10Å
C5'H4sing1.09Å1.10Å
C4'H5sing1.09Å1.10Å
C3'H6sing1.09Å1.10Å
C2'H7sing1.09Å1.10Å
C2'H8sing1.09Å1.10Å
C1'H9sing1.09Å1.10Å
C6H10sing1.08Å1.08Å
N3H11sing0.97Å1.00Å
N22H12sing0.97Å1.00Å
C23H13sing1.09Å1.10Å
C23H14sing1.09Å1.10Å
C30H15sing1.08Å1.08Å
C31H16sing1.08Å1.08Å
C32H17sing1.08Å1.08Å
C33H18sing1.08Å1.08Å
C27H19sing1.08Å1.08Å
C26H20sing1.08Å1.08Å
C25H21sing1.08Å1.08Å
O3'H22sing0.97Å0.95Å
PO3Psing1.61Å17.82Å
O3PH1sing0.97Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O2C2N3117.3°118.9°
O2C2N1122.2°119.0°
C27C26C25118.5°121.0°
C26C27C28120.9°119.7°
C26C27H19119.5°120.1°
C27C26H20120.8°119.5°
C26C25C24121.1°120.9°
C25C26H20120.8°119.5°
C26C25H21119.4°119.5°
C2N3C4122.8°120.4°
N3C2N1120.5°122.1°
C2N3H11118.6°119.8°
N3C4O4117.1°120.7°
N3C4C5117.9°118.5°
C4N3H11118.6°119.8°
C2N1C1'119.2°119.2°
C2N1C6120.2°121.5°
C27C28C33120.4°121.3°
C27C28C29120.4°119.3°
C28C27H19119.6°120.2°
O4C4C5125.0°120.7°
C1'C2'C3'103.4°104.1°
C2'C1'N1117.7°110.4°
C2'C1'O4'104.4°104.9°
C1'C2'H7111.0°110.6°
C1'C2'H8111.0°110.5°
C2'C1'H9108.8°110.4°
C2'C3'O3'111.3°110.7°
C2'C3'C4'103.6°104.1°
C2'C3'H6113.9°110.5°
C3'C2'H7110.9°110.4°
C3'C2'H8111.0°110.5°
C4C5C6118.8°118.1°
C4C5C5M122.7°121.0°
C25C24C29120.2°119.7°
C25C24C23120.7°120.1°
C24C25H21119.5°119.5°
C1'N1C6120.5°119.3°
N1C1'O4'105.8°110.4°
N1C1'H9109.6°110.4°
N1C6C5119.8°119.3°
N1C6H10120.1°120.3°
C1'O4'C4'109.8°105.2°
O4'C1'H9110.1°110.3°
C6C5C5M118.6°121.0°
C5C6H10120.1°120.3°
C5C5MN22120.8°120.0°
C5C5MO21119.3°120.0°
O3'C3'C4'96.8°110.5°
O3'C3'H6115.3°110.4°
C3'O3'H22109.5°114.0°
C3'C4'O4'107.6°104.9°
C3'C4'C5'110.1°110.4°
C3'C4'H5108.4°110.4°
C4'C3'H6114.2°110.5°
C33C28C29119.2°119.4°
C28C33C32120.8°119.7°
C28C33H18119.6°120.2°
C28C29C24118.9°119.4°
C28C29C30120.2°119.4°
C33C32C31120.4°121.0°
C33C32H17119.8°119.5°
C32C33H18119.6°120.1°
C29C24C23119.1°120.2°
C24C29C30120.9°121.3°
C24C23N22109.8°109.4°
C24C23H13109.4°109.5°
C24C23H14109.4°109.5°
N22C5MO21119.9°120.0°
C5MN22C23124.1°120.0°
C5MN22H12118.0°120.0°
C23N22H12118.0°120.0°
N22C23H13109.4°109.4°
N22C23H14109.4°109.4°
C29C30C31120.4°119.6°
C29C30H15119.8°120.3°
O4'C4'C5'113.1°110.4°
O4'C4'H5109.2°110.4°
C4'C5'O5'112.1°109.5°
C4'C5'H3108.8°109.4°
C4'C5'H4108.8°109.5°
C5'C4'H5108.4°110.3°
C5'O5'P104.1°122.9°
O5'C5'H3108.8°109.5°
O5'C5'H4108.8°109.5°
O5'PO2P110.5°109.5°
O5'PO1P120.9°109.5°
O5'PO3P5.3°109.4°
C32C31C30119.0°121.0°
C32C31H16120.5°119.5°
C31C32H17119.8°119.5°
C31C30H15119.8°120.1°
C30C31H16120.5°119.5°
O2PPO1P125.8°109.5°
PO2PH2109.5°114.0°
O2PPO3P112.0°109.4°
O1PPO3P117.8°109.4°
H3C5'H4109.5°109.4°
H7C2'H8109.5°110.6°
H13C23H14109.4°109.5°
PO3PH190.0°114.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O2C2N3N1179.7°179.5°
O2C2N3C4178.4°180.0°
O2C2N1C1'2.3°0.2°
O2C2N1C6178.1°180.0°
O2C2N3H111.6°0.6°
C27C26C25H20180.0°179.9°
C26C27C28H19180.0°180.0°
C27C26C25C241.6°0.3°
C26C27C28C33179.5°179.9°
C26C27C28C290.2°0.1°
C27C26C25H21178.4°180.0°
C25C26C27C281.1°0.1°
C26C25C24H21180.0°179.7°
C26C25C24C290.9°0.4°
C26C25C24C23180.0°179.9°
C25C26C27H19179.0°179.9°
C2N3C4H11180.0°179.4°
C2N3C4O4179.9°179.7°
C2N3C4C51.2°0.3°
N3C2N1C1'178.0°179.7°
N3C2N1C62.2°0.5°
C4N3C2N12.0°0.6°
N3C4O4C5178.6°180.0°
N3C4C5C60.7°0.0°
N3C4C5C5M179.7°179.9°
C2N1C1'C2'105.2°65.2°
C2N1C1'C6175.8°179.8°
C2N1C1'O4'138.7°50.2°
C2N1C6C51.7°0.2°
C2N1C1'H920.0°172.4°
C2N1C6H10178.2°179.7°
N1C2N3H11178.1°180.0°
C27C28C33C29179.3°180.0°
C27C28C33C32179.9°180.0°
C27C28C29C240.9°0.0°
C27C28C29C30179.3°180.0°
C27C28C33H180.1°0.1°
C28C27C26H20179.0°180.0°
O4C4C5C6179.3°180.0°
O4C4C5C5M1.1°0.1°
O4C4N3H110.1°0.3°
C1'C2'C3'H7119.0°118.7°
C1'C2'C3'H8119.1°118.7°
C2'C1'N1O4'116.1°115.5°
C2'C1'N1H9125.1°122.3°
C2'C1'N1C679.0°115.0°
C2'C1'O4'H9116.7°118.9°
C1'C2'C3'O3'72.9°118.7°
C1'C2'C3'C4'30.1°0.1°
C2'C1'O4'C4'23.6°40.4°
C1'C2'C3'H6154.7°118.7°
C1'C2'H7H8122.8°122.8°
C3'C2'C1'N1150.1°142.8°
C3'C2'C1'O4'33.2°24.0°
C2'C3'O3'C4'107.5°114.7°
C2'C3'O3'H6131.7°122.7°
C2'C3'C4'H6124.4°118.6°
C2'C3'C4'O4'16.7°23.9°
C2'C3'C4'C5'107.0°142.8°
C2'C3'C4'H5134.6°95.0°
C3'C2'H7H8122.8°122.6°
C3'C2'C1'H984.4°94.8°
C2'C3'O3'H22180.0°65.2°
C4C5C6N11.0°0.1°
C4C5C6C5M179.6°179.9°
C4C5C5MN2221.5°5.8°
C4C5C5MO21160.4°174.4°
C4C5C6H10179.0°180.0°
C5C4N3H11178.8°179.7°
C25C24C29C280.3°0.2°
C25C24C29C23179.1°179.7°
C25C24C23N223.2°100.3°
C25C24C29C30178.7°179.7°
C25C24C23H13123.2°139.8°
C25C24C23H14116.9°19.7°
C24C25C26H20178.4°179.7°
N1C1'O4'H9118.4°122.3°
C1'N1C6C5177.5°180.0°
N1C1'O4'C4'148.5°159.3°
N1C1'C2'H790.9°24.3°
N1C1'C2'H831.0°98.5°
C1'N1C6H102.5°0.0°
C6N1C1'O4'37.1°129.6°
N1C6C5H10180.0°179.9°
N1C6C5C5M179.4°180.0°
C6N1C1'H9155.9°7.4°
C1'O4'C4'C3'4.4°40.4°
C1'O4'C4'C5'126.2°159.3°
C1'O4'C4'H5113.0°78.5°
O4'C1'C2'H7152.2°94.6°
O4'C1'C2'H885.9°142.6°
C6C5C5MN22158.1°174.3°
C6C5C5MO2120.0°5.5°
C5C5MN22O21178.0°179.9°
C5C5MN22C23179.3°174.9°
C5MC5C6H100.6°0.1°
C5C5MN22H120.8°5.1°
O3'C3'C4'H6121.6°122.5°
O3'C3'C4'O4'97.2°142.7°
O3'C3'C4'C5'139.1°98.4°
O3'C3'C4'H520.7°23.9°
O3'C3'C2'H746.2°122.6°
O3'C3'C2'H8168.1°0.0°
C3'C4'O4'C5'121.8°118.9°
C3'C4'O4'H5117.4°118.9°
C3'C4'C5'H5118.4°122.3°
C3'C4'C5'O5'60.2°176.5°
C3'C4'C5'H3179.3°63.4°
C3'C4'C5'H460.1°56.5°
C4'C3'C2'H7149.1°118.6°
C4'C3'C2'H889.0°118.7°
C4'C3'O3'H2272.5°180.0°
C28C33C32H18180.0°180.0°
C33C28C29C24179.8°180.0°
C33C28C29C301.4°0.0°
C28C33C32C310.5°0.0°
C28C33C32H17179.5°180.0°
C33C28C27H190.5°0.0°
C29C28C33C320.6°0.0°
C28C29C24C30178.4°180.0°
C28C29C24C23178.8°180.0°
C28C29C30C311.0°0.0°
C28C29C30H15179.0°180.0°
C29C28C33H18179.4°180.0°
C29C28C27H19179.8°180.0°
C33C32C31H17180.0°180.0°
C33C32C31C300.9°0.0°
C33C32C31H16179.1°180.0°
C29C24C23N22177.7°80.0°
C24C29C30C31179.4°180.0°
C29C24C23H1357.7°39.9°
C29C24C23H1462.2°160.0°
C24C29C30H150.6°0.0°
C29C24C25H21179.1°179.9°
C24C23N22C5M105.7°180.0°
C24C23N22H13120.1°120.0°
C24C23N22H14120.1°120.0°
C23C24C29C300.3°0.0°
C24C23N22H1274.2°0.1°
C24C23H13H14119.8°120.1°
C23C24C25H210.0°0.2°
C5MN22C23H12180.0°180.0°
C5MN22C23H1314.3°60.0°
C5MN22C23H14134.2°60.0°
O21C5MN22C231.2°5.0°
O21C5MN22H12178.8°175.0°
N22C23H13H14119.9°119.9°
C29C30C31C320.2°0.0°
C29C30C31H15180.0°180.0°
C29C30C31H16179.8°180.0°
O4'C4'C5'H5121.2°122.2°
O4'C4'C5'O5'60.2°67.9°
O4'C4'C5'H360.2°52.1°
O4'C4'C5'H4179.4°172.0°
O4'C4'C3'H6141.1°94.7°
C4'O4'C1'H993.1°78.5°
C4'C5'O5'H3120.4°120.0°
C4'C5'O5'H4120.4°120.1°
C4'C5'O5'P178.5°180.0°
C4'C5'H3H4118.8°120.0°
C5'C4'C3'H617.4°24.2°
C5'O5'PO2P70.2°65.0°
C5'O5'PO1P92.0°55.0°
O5'C5'H3H4118.8°120.1°
O5'C5'C4'H5178.6°54.3°
C5'O5'PO3P37.2°175.0°
O5'PO2PO1P161.1°120.1°
O5'PO2PO3P5.4°120.0°
O5'PO1PO3P4.8°119.9°
O5'PO2PH2161.1°60.0°
PO5'C5'H361.2°60.0°
PO5'C5'H458.1°60.0°
O5'PO3PH190.0°180.0°
C32C31C30H16180.0°180.0°
C32C31C30H15179.8°180.0°
C31C32C33H18179.5°180.0°
C30C31C32H17179.1°180.0°
O2PPO1PO3P154.4°120.0°
O2PPO3PH190.0°60.0°
O1PPO2PH20.0°179.9°
O1PPO3PH190.0°60.0°
H2O2PPO3P155.7°60.0°
H3C5'C4'H561.0°174.3°
H4C5'C4'H558.2°65.8°
H5C4'C3'H6100.9°146.4°
H6C3'C2'H786.3°0.0°
H6C3'C2'H835.7°122.6°
H6C3'O3'H2248.3°57.4°
H7C2'C1'H934.6°146.6°
H8C2'C1'H9156.6°23.8°
H12N22C23H13165.7°120.0°
H12N22C23H1445.8°120.0°
H15C30C31H160.2°0.0°
H16C31C32H170.9°0.0°
H17C32C33H180.5°0.0°
H19C27C26H201.0°0.1°
H20C26C25H211.6°0.1°

225946

PDB entries from 2024-10-09

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