Loading
PDBj
MenuPDBj@FacebookPDBj@TwitterPDBj@YouTubewwPDB FoundationwwPDB
RCSB PDBPDBeBMRBAdv. SearchSearch help

25U

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
NADC2sing1.38Å1.33Å
C2N3doub1.33Å1.42ÅAromatic
C2N1sing1.32Å1.34ÅAromatic
N3C4sing1.32Å1.41ÅAromatic
CAACAOsing1.53Å1.52Å
N1C6doub1.33Å1.34ÅAromatic
C4CAOsing1.51Å1.39Å
C4C5doub1.40Å1.37ÅAromatic
C6C5sing1.41Å1.38ÅAromatic
C6NAEsing1.38Å1.33Å
C5CAFsing1.43Å1.41Å
CAFCAGtrip1.17Å1.18Å
CAGCBBsing1.47Å1.50Å
CBBCAYsing1.51Å1.38Å
NAOCAJdoub1.32Å1.39ÅAromatic
NAOCAIsing1.32Å1.40ÅAromatic
CANCAYdoub1.38Å1.38ÅAromatic
CANCAXsing1.39Å1.38ÅAromatic
CAJCAWsing1.40Å1.39ÅAromatic
CAINAPdoub1.32Å1.40ÅAromatic
CAYCAMsing1.38Å1.39ÅAromatic
CAWCAXsing1.48Å1.38Å
CAWCAKdoub1.40Å1.39ÅAromatic
NAPCAKsing1.32Å1.40ÅAromatic
CAXCALdoub1.39Å1.39ÅAromatic
CAMCAVdoub1.38Å1.39ÅAromatic
CALCAVsing1.38Å1.39ÅAromatic
CAAH1sing1.09Å1.10Å
CAAH2sing1.09Å1.10Å
CAAH3sing1.09Å1.10Å
CAOH4sing1.09Å1.10Å
CAOH5sing1.09Å1.10Å
NADH6sing0.97Å1.00Å
NADH7sing0.97Å1.00Å
NAEH8sing0.97Å1.00Å
NAEH9sing0.97Å1.00Å
CBBH10sing1.09Å1.10Å
CBBH11sing1.09Å1.10Å
CANH12sing1.08Å1.08Å
CAMH13sing1.08Å1.08Å
CAVH14sing1.08Å1.08Å
CALH15sing1.08Å1.08Å
CAJH16sing1.08Å1.08Å
CAIH17sing1.08Å1.08Å
CAKH18sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
NADC2N3120.5°119.0°
NADC2N1118.5°119.0°
C2NADH6109.5°120.0°
C2NADH7109.5°120.0°
N3C2N1121.0°122.0°
C2N3C4117.8°121.1°
C2N1C6120.7°120.8°
N3C4CAO126.5°120.5°
N3C4C5119.2°119.1°
CAACAOC4119.1°109.5°
CAOCAAH1109.5°109.4°
CAOCAAH2109.5°109.4°
CAOCAAH3109.5°109.5°
CAACAOH4107.0°109.5°
CAACAOH5107.0°109.4°
N1C6C5121.0°118.9°
N1C6NAE122.7°120.6°
CAOC4C5114.3°120.4°
C4CAOH4107.0°109.4°
C4CAOH5107.0°109.4°
C4C5C6120.2°118.2°
C4C5CAF117.6°120.9°
C5C6NAE116.3°120.5°
C6C5CAF122.2°120.9°
C6NAEH8109.5°120.0°
C6NAEH9109.4°120.0°
C5CAFCAG179.3°180.0°
CAFCAGCBB178.5°180.0°
CAGCBBCAY102.8°109.4°
CAGCBBH10111.1°109.5°
CAGCBBH11111.1°109.5°
CBBCAYCAN119.8°120.0°
CBBCAYCAM120.2°120.0°
CAYCBBH10111.1°109.5°
CAYCBBH11111.1°109.5°
CAJNAOCAI119.8°121.0°
NAOCAJCAW119.8°118.9°
NAOCAJH16120.1°120.5°
NAOCAINAP120.1°122.0°
NAOCAIH17119.9°119.0°
CAYCANCAX120.0°119.9°
CANCAYCAM120.0°120.1°
CAYCANH12120.0°120.0°
CANCAXCAW119.7°120.1°
CANCAXCAL119.8°119.8°
CAXCANH12120.0°120.0°
CAJCAWCAX118.0°120.9°
CAJCAWCAK121.0°118.2°
CAWCAJH16120.1°120.6°
CAINAPCAK119.8°121.0°
NAPCAIH17120.0°118.9°
CAYCAMCAV119.8°120.3°
CAYCAMH13120.1°119.9°
CAXCAWCAK121.0°120.9°
CAWCAXCAL119.3°120.1°
CAWCAKNAP119.5°118.9°
CAWCAKH18120.2°120.5°
NAPCAKH18120.3°120.5°
CAXCALCAV119.7°119.9°
CAXCALH15120.1°120.1°
CAMCAVCAL120.0°120.1°
CAVCAMH13120.1°119.9°
CAMCAVH14120.0°120.0°
CALCAVH14120.0°119.9°
CAVCALH15120.2°120.0°
H1CAAH2109.5°109.5°
H1CAAH3109.4°109.5°
H2CAAH3109.5°109.5°
H4CAOH5109.5°109.5°
H6NADH7109.4°120.0°
H8NAEH9109.5°120.0°
H10CBBH11109.4°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
NADC2N3N1179.9°180.0°
NADC2N3C4179.9°180.0°
NADC2N1C6179.5°180.0°
C2NADH6H7120.0°180.0°
N3C2N1C60.5°0.0°
C2N3C4CAO179.9°179.9°
C2N3C4C51.7°0.3°
N3C2NADH60.0°0.0°
N3C2NADH7120.0°180.0°
N1C2N3C40.2°0.0°
C2N1C6C50.4°0.2°
C2N1C6NAE179.9°180.0°
N1C2NADH6179.9°180.0°
N1C2NADH759.9°0.0°
N3C4CAOCAA5.7°89.7°
N3C4CAOC5178.2°179.6°
N3C4C5C62.7°0.5°
N3C4C5CAF179.8°179.7°
N3C4CAOH4115.7°150.3°
N3C4CAOH5127.0°30.3°
CAACAOC4H4121.4°120.1°
CAACAOC4H5121.4°120.0°
CAACAOC4C5176.1°90.0°
CAOCAAH1H2120.0°120.0°
CAOCAAH1H3120.0°120.0°
CAOCAAH2H3120.0°120.0°
CAACAOH4H5115.6°120.0°
N1C6C5C42.0°0.4°
N1C6C5NAE179.5°179.8°
N1C6C5CAF179.4°179.7°
N1C6NAEH80.0°0.0°
N1C6NAEH9120.0°179.9°
CAOC4C5C6179.0°179.9°
CAOC4C5CAF1.4°0.0°
C4CAOCAAH1180.0°180.0°
C4CAOCAAH260.0°60.0°
C4CAOCAAH360.0°60.0°
C4CAOH4H5115.6°119.9°
C4C5C6CAF177.4°179.8°
C4C5C6NAE178.5°179.7°
C4C5CAFCAG40.2°70.1°
C5C4CAOH462.5°30.1°
C5C4CAOH554.7°150.0°
C6C5CAFCAG142.4°109.7°
C5C6NAEH8179.5°179.8°
C5C6NAEH959.5°0.2°
NAEC6C5CAF1.1°0.1°
C6NAEH8H9120.0°180.0°
C5CAFCAGCBB176.9°176.0°
CAFCAGCBBCAY52.6°66.1°
CAFCAGCBBH1066.3°53.9°
CAFCAGCBBH11171.5°173.9°
CAGCBBCAYH10118.9°120.0°
CAGCBBCAYH11118.9°120.0°
CAGCBBCAYCAN98.4°89.8°
CAGCBBCAYCAM81.0°90.1°
CAGCBBH10H11123.1°120.0°
CBBCAYCANCAM179.4°179.8°
CBBCAYCANCAX173.2°180.0°
CBBCAYCAMCAV178.4°180.0°
CAYCBBH10H11123.1°120.0°
CBBCAYCANH126.8°0.1°
CBBCAYCAMH131.6°0.1°
NAOCAJCAWH16180.0°180.0°
CAJNAOCAINAP0.2°0.1°
NAOCAJCAWCAX180.0°180.0°
NAOCAJCAWCAK0.5°0.3°
CAJNAOCAIH17179.8°180.0°
CAINAOCAJCAW0.2°0.1°
NAOCAINAPH17180.0°179.9°
NAOCAINAPCAK0.2°0.4°
CAINAOCAJH16179.8°180.0°
CAYCANCAXH12180.0°179.9°
CAYCANCAXCAW176.8°180.0°
CAYCANCAXCAL9.8°0.1°
CANCAYCAMCAV1.0°0.2°
CANCAYCBBH10142.7°150.3°
CANCAYCBBH1120.6°30.2°
CANCAYCAMH13179.0°179.7°
CANCAXCAWCAJ11.9°0.3°
CAXCANCAYCAM6.2°0.2°
CANCAXCAWCAL167.1°180.0°
CANCAXCAWCAK168.6°180.0°
CANCAXCALCAV8.3°0.3°
CANCAXCALH15171.8°180.0°
CAJCAWCAXCAK179.4°179.7°
CAJCAWCAKNAP0.5°0.5°
CAJCAWCAXCAL155.1°179.7°
CAJCAWCAKH18179.5°179.7°
CAINAPCAKCAW0.2°0.6°
CAINAPCAKH18179.9°179.7°
CAYCAMCAVH13180.0°179.9°
CAYCAMCAVCAL0.5°0.0°
CAMCAYCBBH1037.9°29.9°
CAMCAYCBBH11160.1°150.0°
CAMCAYCANH12173.8°179.7°
CAYCAMCAVH14179.5°180.0°
CAXCAWCAKNAP180.0°179.8°
CAWCAXCALCAV175.3°179.7°
CAWCAXCANH123.2°0.0°
CAWCAXCALH154.7°0.0°
CAXCAWCAJH160.0°0.0°
CAXCAWCAKH180.1°0.0°
CAWCAKNAPH18180.0°179.7°
CAKCAWCAXCAL24.3°0.0°
CAKCAWCAJH16179.4°179.8°
CAKNAPCAIH17179.8°179.7°
CAXCALCAVCAM3.1°0.3°
CAXCALCAVH15180.0°179.7°
CALCAXCANH12170.2°180.0°
CAXCALCAVH14176.9°179.7°
CAMCAVCALH14180.0°180.0°
CAMCAVCALH15176.9°180.0°
CALCAVCAMH13179.5°179.9°
H1CAAH2H3120.0°120.0°
H1CAACAOH458.6°60.0°
H1CAACAOH558.6°60.0°
H2CAACAOH461.4°60.0°
H2CAACAOH5178.6°180.0°
H3CAACAOH4178.6°180.0°
H3CAACAOH561.4°60.0°
H13CAMCAVH140.6°0.1°
H14CAVCALH153.1°0.0°

224201

PDB entries from 2024-08-28

PDB statisticsPDBj update infoContact PDBjnumon