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1SY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O44P18doub1.48Å1.47Å
O19P18sing1.61Å1.52Å
P18O17sing1.61Å1.60Å
P18O20sing1.61Å1.63Å
O17C16sing1.43Å1.40Å
O4'C4'sing1.43Å1.45Å
O4'C1'sing1.43Å1.42Å
C16C4'sing1.53Å1.50Å
C8N7doub1.30Å1.36ÅAromatic
C8N9sing1.36Å1.34ÅAromatic
N7C5sing1.35Å1.37ÅAromatic
O20C21sing1.42Å1.42Å
N9C1'sing1.46Å1.44Å
N9C4sing1.37Å1.37ÅAromatic
N41C40sing1.37Å1.43Å
C4'C3'sing1.54Å1.47Å
C1'C2'sing1.54Å1.45Å
C5C4doub1.40Å1.41ÅAromatic
C5C6sing1.41Å1.43ÅAromatic
N01C6sing1.38Å1.48Å
C4N3sing1.33Å1.36ÅAromatic
C40N42sing1.36Å1.46Å
C40N39doub1.32Å1.43Å
C6N1doub1.33Å1.34ÅAromatic
N42C36sing1.37Å1.44Å
N39C38sing1.34Å1.42Å
C21C22sing1.55Å1.50Å
C21C32sing1.54Å1.49Å
O23C22sing1.43Å1.42Å
N3C2doub1.32Å1.32ÅAromatic
C3'C2'sing1.54Å1.46Å
C3'O28sing1.43Å1.46Å
N1C2sing1.32Å1.34ÅAromatic
C2'O2'sing1.43Å1.43Å
C36C37doub1.39Å1.39ÅAromatic
C36N33sing1.36Å1.36ÅAromatic
C38O43doub1.22Å1.25Å
C38C37sing1.47Å1.50Å
C22C24sing1.55Å1.46Å
C32N33sing1.46Å1.37Å
C32O31sing1.43Å1.45Å
C37N35sing1.35Å1.35ÅAromatic
N33C34sing1.36Å1.32ÅAromatic
O28P27sing1.61Å1.65Å
N35C34doub1.30Å1.34ÅAromatic
O31C24sing1.43Å1.45Å
C24C25sing1.53Å1.51Å
O26P27sing1.61Å1.60Å
O26C25sing1.43Å1.40Å
P27O29doub1.48Å1.49Å
P27O30sing1.61Å1.48Å
C2H1sing1.08Å1.08Å
N01H2sing0.97Å1.00Å
N01H3sing0.97Å1.00Å
C8H4sing1.08Å1.08Å
C1'H5sing1.09Å1.10Å
C2'H6sing1.09Å1.10Å
O2'H7sing0.97Å0.95Å
C3'H8sing1.09Å1.10Å
C4'H9sing1.09Å1.10Å
C16H10sing1.09Å1.10Å
C16H11sing1.09Å1.10Å
O19H12sing0.97Å0.95Å
C21H13sing1.09Å1.10Å
C22H14sing1.08Å1.10Å
O23H15sing0.97Å0.95Å
C24H16sing1.09Å1.10Å
C25H17sing1.09Å1.10Å
C25H18sing1.09Å1.10Å
O30H19sing0.97Å0.95Å
C32H20sing1.09Å1.10Å
C34H21sing1.08Å1.08Å
N41H22sing0.97Å1.00Å
N41H23sing0.97Å1.00Å
N42H24sing0.97Å1.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O44P18O19110.1°109.5°
O44P18O17106.8°109.4°
O44P18O20106.5°109.2°
O19P18O17113.0°109.4°
O19P18O20110.0°109.4°
P18O19H12109.5°114.0°
O17P18O20110.2°109.8°
P18O17C16119.8°123.9°
P18O20C21116.4°123.0°
O17C16C4'108.4°109.5°
O17C16H10109.7°109.4°
O17C16H11109.7°109.7°
C4'O4'C1'108.5°110.4°
O4'C4'C16109.8°109.6°
O4'C4'C3'104.5°108.6°
O4'C4'H9110.7°109.6°
O4'C1'N9109.7°109.9°
O4'C1'C2'105.1°107.5°
O4'C1'H5110.9°109.9°
C16C4'C3'111.3°109.9°
C16C4'H9110.0°109.5°
C4'C16H10109.7°109.6°
C4'C16H11109.8°109.4°
N7C8N9106.4°110.0°
C8N7C5109.9°109.4°
N7C8H4126.8°125.0°
C8N9C1'135.7°126.3°
C8N9C4112.3°107.4°
N9C8H4126.8°125.1°
N7C5C4107.1°107.1°
N7C5C6136.2°134.6°
O20C21C22112.3°111.0°
O20C21C32110.1°111.5°
O20C21H13111.1°112.0°
C1'N9C4112.0°126.3°
N9C1'C2'109.9°109.8°
N9C1'H5110.7°109.9°
N9C4C5104.3°106.0°
N9C4N3136.0°134.9°
N41C40N42119.4°118.8°
N41C40N39120.0°118.7°
C40N41H22120.0°120.0°
C40N41H23120.0°120.1°
C4'C3'C2'101.4°104.9°
C4'C3'O28111.0°111.2°
C4'C3'H8111.8°110.5°
C3'C4'H9110.4°109.7°
C1'C2'C3'104.7°104.5°
C1'C2'O2'107.3°110.4°
C2'C1'H5110.5°109.8°
C1'C2'H6111.7°110.6°
C4C5C6116.7°118.2°
C5C4N3119.6°119.0°
C5C6N01120.4°120.8°
C5C6N1118.7°118.5°
N01C6N1121.0°120.7°
C6N01H2109.5°120.0°
C6N01H3109.5°120.0°
C4N3C2122.1°120.7°
N42C40N39120.6°122.5°
C40N42C36119.4°120.5°
C40N42H24120.3°119.8°
C40N39C38119.8°121.4°
C6N1C2123.1°121.1°
N42C36C37120.8°118.9°
N42C36N33132.0°134.7°
C36N42H24120.3°119.7°
N39C38O43119.7°120.7°
N39C38C37119.3°118.6°
C22C21C32103.1°102.1°
C21C22O23110.8°110.5°
C21C22C24104.5°102.3°
C22C21H13110.0°109.8°
C21C22H14110.6°111.0°
C21C32N33113.1°110.0°
C21C32O31106.3°107.3°
C32C21H13110.0°109.9°
C21C32H20108.9°109.7°
O23C22C24107.5°110.6°
O23C22H14111.8°111.1°
C22O23H15109.5°114.1°
N3C2N1119.8°122.4°
N3C2H1120.1°118.8°
C2'C3'O28108.1°110.2°
C3'C2'O2'109.5°110.2°
C3'C2'H6111.4°110.5°
C2'C3'H8111.9°109.9°
C3'O28P27117.9°125.1°
O28C3'H8112.0°110.1°
N1C2H1120.1°118.8°
O2'C2'H6111.9°110.6°
C2'O2'H7109.5°114.0°
C37C36N33107.2°106.4°
C36C37C38120.2°118.1°
C36C37N35106.0°107.4°
C36N33C32123.0°126.2°
C36N33C34108.5°107.5°
O43C38C37121.1°120.7°
C38C37N35133.8°134.5°
C22C24O31106.7°106.4°
C22C24C25113.5°109.3°
C24C22H14111.3°111.1°
C22C24H16108.3°110.0°
N33C32O31108.1°110.0°
C32N33C34128.5°126.3°
N33C32H20110.7°110.3°
C32O31C24108.1°110.7°
O31C32H20109.5°109.5°
C37N35C34109.1°109.1°
N33C34N35109.2°109.6°
N33C34H21125.4°125.3°
O28P27O26111.6°110.0°
O28P27O29111.5°109.2°
O28P27O30106.1°109.7°
N35C34H21125.4°125.1°
O31C24C25112.2°109.8°
O31C24H16108.4°110.3°
C24C25O26113.2°109.9°
C25C24H16107.7°110.9°
C24C25H17108.5°109.0°
C24C25H18108.5°109.8°
P27O26C25121.0°124.0°
O26P27O29109.4°109.1°
O26P27O30109.3°109.6°
O26C25H17108.5°109.5°
O26C25H18108.6°109.9°
O29P27O30108.8°109.3°
P27O30H19109.5°114.0°
H2N01H3109.4°120.0°
H10C16H11109.5°109.2°
H17C25H18109.5°108.8°
H22N41H23120.0°120.0°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O44P18O19O17119.3°119.9°
O44P18O19O20117.1°119.7°
O44P18O17O20115.3°119.9°
O44P18O17C1656.1°154.2°
O44P18O20C21154.3°140.7°
O44P18O19H120.0°59.9°
O19P18O17O20123.5°120.2°
O19P18O17C16177.3°34.3°
O19P18O20C2186.4°99.5°
P18O17C16C4'170.3°170.2°
O17P18O20C2138.9°20.6°
P18O17C16H1050.4°50.0°
P18O17C16H1169.9°69.7°
O17P18O19H12119.3°60.0°
O20P18O17C1659.1°85.9°
P18O20C21C22138.7°117.8°
P18O20C21C32107.1°129.1°
O20P18O19H12117.1°179.6°
P18O20C21H1315.0°5.3°
O17C16C4'O4'62.3°111.1°
O17C16C4'H10119.8°120.0°
O17C16C4'H11119.8°120.3°
O17C16C4'C3'52.9°129.7°
O17C16C4'H9175.6°9.2°
O17C16H10H11120.5°120.0°
O4'C4'C16C3'115.2°119.2°
O4'C4'C16H9122.1°120.3°
C4'O4'C1'N9109.4°140.0°
O4'C4'C3'H9119.1°119.8°
C4'O4'C1'C2'8.7°20.5°
O4'C4'C3'C2'33.8°1.1°
O4'C4'C3'O28148.4°118.0°
C4'O4'C1'H5128.1°99.0°
O4'C4'C3'H885.7°119.5°
O4'C4'C16H10177.9°128.9°
O4'C4'C16H1157.5°9.2°
C1'O4'C4'C16135.5°132.2°
O4'C1'N9C816.0°23.0°
O4'C1'N9C2'115.1°118.1°
O4'C1'N9H5122.6°121.0°
O4'C1'N9C4164.3°156.9°
C1'O4'C4'C3'16.1°12.1°
O4'C1'C2'H5119.7°119.5°
O4'C1'C2'C3'30.4°20.2°
O4'C1'C2'O2'85.9°138.6°
O4'C1'C2'H6151.1°98.7°
C1'O4'C4'H9102.8°107.6°
C16C4'C3'H9122.5°120.4°
C16C4'C3'C2'152.2°118.7°
C16C4'C3'O2893.2°122.2°
C16C4'C3'H832.7°0.3°
C4'C16H10H11120.5°119.8°
N7C8N9H4180.0°179.9°
N7C8N9C1'179.7°180.0°
N7C8N9C40.6°0.0°
C8N7C5C40.2°0.0°
C8N7C5C6179.8°179.6°
N9C8N7C50.2°0.0°
C8N9C1'C4179.7°179.9°
C8N9C1'C2'99.1°95.0°
C8N9C4C50.7°0.0°
C8N9C4N3179.5°180.0°
C8N9C1'H5138.6°144.1°
N7C5C4N90.5°0.0°
N7C5C4C6180.0°179.7°
N7C5C6N010.7°0.2°
N7C5C4N3179.6°180.0°
N7C5C6N1179.9°179.9°
C5N7C8H4179.8°179.9°
O20C21C22C32118.5°118.9°
O20C21C22H13124.3°124.4°
O20C21C32H13122.8°124.9°
O20C21C22O2336.8°33.7°
O20C21C22C24152.4°151.5°
O20C21C32N3395.3°95.9°
O20C21C32O31146.2°144.4°
O20C21C22H1487.8°90.0°
O20C21C32H2028.3°25.5°
N9C1'C2'H5122.4°120.9°
C1'N9C4C5179.5°180.0°
C1'N9C4N30.7°0.0°
N9C1'C2'C3'87.5°139.8°
N9C1'C2'O2'156.2°101.8°
C1'N9C8H40.3°0.1°
N9C1'C2'H633.2°20.9°
C4N9C1'C2'80.6°85.0°
N9C4C5N3179.1°180.0°
N9C4C5C6179.5°179.7°
N9C4N3C2179.3°180.0°
C4N9C8H4179.4°179.9°
C4N9C1'H541.7°35.9°
N41C40N42N39179.5°179.2°
N41C40N42C36179.6°180.0°
N41C40N39C38179.9°179.6°
C40N41H22H23180.0°179.9°
N41C40N42H240.4°0.8°
C4'C3'C2'C1'39.7°12.6°
C4'C3'C2'O28116.8°119.7°
C4'C3'C2'H8119.4°118.8°
C4'C3'O28H8125.8°122.8°
C4'C3'C2'O2'75.1°131.1°
C4'C3'O28P27164.6°68.8°
C4'C3'C2'H6160.6°106.3°
C3'C4'C16H1066.9°9.7°
C3'C4'C16H11172.7°110.0°
C1'C2'C3'O2'114.8°118.5°
C1'C2'C3'H6120.9°118.9°
C1'C2'C3'O28156.5°107.1°
C1'C2'O2'H6122.9°122.7°
C1'C2'O2'H7180.0°61.3°
C1'C2'C3'H879.6°131.4°
C4C5C6N01179.4°179.8°
C4C5C6N10.0°0.3°
C5C4N3C20.6°0.0°
C5C6N01N1179.4°179.9°
C6C5C4N30.4°0.3°
C5C6N1C20.1°0.0°
C5C6N01H2179.4°180.0°
C5C6N01H360.6°0.1°
N01C6N1C2179.5°179.9°
C6N01H2H3120.0°180.0°
C4N3C2N10.4°0.3°
C4N3C2H1179.6°180.0°
C40N42C36H24180.0°179.2°
N42C40N39C380.6°0.4°
C40N42C36C370.5°0.7°
C40N42C36N33180.0°179.8°
N42C40N41H22179.5°0.0°
N42C40N41H230.5°180.0°
N39C40N42C360.9°0.8°
C40N39C38O43179.9°180.0°
C40N39C38C370.0°0.0°
N39C40N41H220.0°179.3°
N39C40N41H23180.0°0.8°
N39C40N42H24179.1°180.0°
C6N1C2N30.1°0.3°
C6N1C2H1180.0°180.0°
N1C6N01H20.0°0.0°
N1C6N01H3120.0°180.0°
N42C36C37N33179.6°179.6°
N42C36C37C380.1°0.3°
N42C36N33C321.7°0.4°
N42C36C37N35179.6°180.0°
N42C36N33C34179.8°179.9°
N39C38C37C360.4°0.0°
N39C38O43C37179.9°180.0°
N39C38C37N35179.7°179.5°
C22C21C32H13117.2°116.5°
C21C22O23C24113.6°112.5°
C21C22O23H14124.0°123.6°
C21C22C24H14119.4°118.4°
C22C21C32N33144.7°145.5°
C22C21C32O3126.2°25.8°
C21C22C24O3129.2°29.2°
C21C22C24C2594.8°89.3°
C21C22O23H15180.0°180.0°
C21C22C24H16145.7°148.7°
C22C21C32H2091.7°93.0°
C32C21C22O2381.6°85.3°
C21C32N33C36125.9°84.7°
C32C21C22C2433.9°32.5°
C21C32N33O31117.4°118.0°
C21C32N33H20122.6°121.1°
C21C32O31H20117.5°119.0°
C21C32N33C3456.4°95.0°
C21C32O31C248.9°7.9°
C32C21C22H14153.7°151.0°
O23C22C24H14122.8°123.9°
O23C22C24O3188.6°88.5°
O23C22C24C25147.4°153.0°
O23C22C21H13161.1°158.1°
O23C22C24H1627.9°31.0°
N3C2N1H1180.0°179.7°
C2'C3'O28H8123.8°121.4°
C3'C2'O2'H6124.0°122.4°
C2'C3'O28P2785.0°175.4°
C3'C2'C1'H5150.1°99.3°
C3'C2'O2'H766.8°176.2°
C2'C3'C4'H985.3°120.9°
O28C3'C2'O2'41.7°11.4°
C3'O28P27O2679.7°42.4°
C3'O28P27O2943.0°162.1°
C3'O28P27O30161.3°78.1°
O28C3'C2'H682.6°133.9°
O28C3'C4'H929.3°1.8°
O2'C2'C1'H533.8°19.1°
O2'C2'C3'H8165.5°110.1°
C36C37C38O43179.5°180.0°
C36C37C38N35179.3°179.6°
C37C36N33C32178.7°179.9°
C37C36N33C340.6°0.4°
C36C37N35C340.7°0.2°
C37C36N42H24179.5°180.0°
N33C36C37C38179.5°180.0°
C36N33C32C34177.7°179.7°
C36N33C32O31116.6°157.3°
N33C36C37N350.1°0.4°
C36N33C34N351.1°0.2°
C36N33C32H203.3°36.4°
C36N33C34H21178.9°179.8°
N33C36N42H240.0°0.5°
O43C38C37N350.2°0.4°
C38C37N35C34179.9°179.8°
C22C24O31C3212.8°13.7°
C22C24O31C25124.8°118.2°
C22C24O31H16116.4°119.3°
C22C24C25H16119.8°121.4°
C22C24C25O2669.2°31.2°
C24C22C21H1383.4°84.1°
C24C22O23H1566.4°67.5°
C22C24C25H17170.3°151.2°
C22C24C25H1851.4°89.8°
N33C32O31H20120.7°121.3°
C32N33C34N35179.1°180.0°
N33C32O31C24130.6°127.6°
N33C32C21H1327.5°29.0°
C32N33C34H211.0°0.0°
O31C32N33C3461.0°23.0°
C32O31C24C25112.0°104.5°
O31C32C21H1391.0°90.7°
C32O31C24H16129.2°133.0°
C37N35C34N331.2°0.0°
C37N35C34H21178.9°180.0°
N33C34N35H21180.0°180.0°
C34N33C32H20179.0°143.9°
O28P27O26O29123.9°119.7°
O28P27O26O30117.1°120.6°
O28P27O26C2584.1°147.7°
O28P27O29O30116.7°120.0°
P27O28C3'H838.8°54.0°
O28P27O30H19120.0°179.2°
O31C24C25H16119.1°122.2°
O31C24C25O2651.8°85.2°
O31C24C22H14148.6°147.7°
O31C24C25H1768.7°34.8°
O31C24C25H18172.4°153.8°
C24O31C32H20108.7°111.0°
C24C25O26P27139.9°124.2°
C24C25O26H17120.5°119.6°
C24C25O26H18120.6°120.9°
C25C24C22H1424.6°29.2°
C24C25H17H18118.3°119.6°
O26P27O29O30119.3°119.8°
P27O26C25H1799.6°116.1°
P27O26C25H1819.4°3.3°
O26P27O30H19119.4°60.0°
C25O26P27O29152.1°28.0°
C25O26P27O3033.1°91.7°
O26C25C24H16171.0°152.6°
O26C25H17H18118.3°120.1°
O29P27O30H190.0°59.6°
H5C1'C2'H689.2°141.8°
H6C2'O2'H757.2°61.4°
H6C2'C3'H841.2°12.4°
H8C3'C4'H9155.2°120.8°
H9C4'C16H1055.8°110.8°
H9C4'C16H1164.6°129.5°
H13C21C22H1436.5°34.4°
H13C21C32H20151.1°150.4°
H14C22O23H1556.0°56.4°
H14C22C24H1694.9°92.8°
H16C24C25H1750.4°87.4°
H16C24C25H1868.5°31.6°

221371

PDB entries from 2024-06-19

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