1RZ
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| O1G | PG | doub | 1.48Å | 1.49Å | |
| O1A | PA | doub | 1.48Å | 1.52Å | |
| O2C | PG | sing | 1.61Å | 1.51Å | |
| PG | O3G | sing | 1.61Å | 1.51Å | |
| PG | O3B | sing | 1.61Å | 1.61Å | |
| N4 | C4 | sing | 1.38Å | 1.35Å | |
| PA | O2A | sing | 1.61Å | 1.51Å | |
| PA | O3A | sing | 1.61Å | 1.62Å | |
| PA | O5' | sing | 1.61Å | 1.61Å | |
| C5 | C4 | sing | 1.41Å | 1.40Å | |
| C5 | C6 | doub | 1.35Å | 1.39Å | |
| O3B | PB | sing | 1.61Å | 1.61Å | |
| O3A | PB | sing | 1.61Å | 1.61Å | |
| C4 | N3 | doub | 1.33Å | 1.35Å | |
| C6 | N1 | sing | 1.36Å | 1.35Å | |
| PB | O2B | doub | 1.48Å | 1.50Å | |
| PB | O1B | sing | 1.61Å | 1.50Å | |
| O5' | C5' | sing | 1.43Å | 1.42Å | |
| N3 | C2 | sing | 1.33Å | 1.34Å | |
| N1 | C2 | sing | 1.35Å | 1.33Å | |
| N1 | C1' | sing | 1.47Å | 1.46Å | |
| C2 | O2 | doub | 1.22Å | 1.35Å | |
| C5' | C4' | sing | 1.53Å | 1.53Å | |
| S3' | C2' | sing | 1.84Å | 1.75Å | |
| S3' | C4' | sing | 1.84Å | 1.77Å | |
| C2' | C1' | sing | 1.55Å | 1.51Å | |
| C4' | O4' | sing | 1.44Å | 1.42Å | |
| C1' | O4' | sing | 1.42Å | 1.41Å | |
| O3G | H1 | sing | 0.97Å | 0.95Å | |
| O1B | H2 | sing | 0.97Å | 0.95Å | |
| O2A | H3 | sing | 0.97Å | 0.95Å | |
| C5' | H4 | sing | 1.09Å | 1.10Å | |
| C5' | H5 | sing | 1.09Å | 1.10Å | |
| C4' | H6 | sing | 1.09Å | 1.10Å | |
| C2' | H7 | sing | 1.09Å | 1.10Å | |
| C2' | H8 | sing | 1.09Å | 1.10Å | |
| C1' | H9 | sing | 1.09Å | 1.10Å | |
| N4 | H10 | sing | 0.97Å | 1.00Å | |
| N4 | H11 | sing | 0.97Å | 1.00Å | |
| C5 | H12 | sing | 1.08Å | 1.08Å | |
| C6 | H13 | sing | 1.08Å | 1.08Å | |
| O2C | H14 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1G | PG | O2C | 114.7° | 109.5° |
| O1G | PG | O3G | 115.6° | 109.4° |
| O1G | PG | O3B | 104.8° | 109.4° |
| O1A | PA | O2A | 119.1° | 109.5° |
| O1A | PA | O3A | 106.1° | 109.5° |
| O1A | PA | O5' | 107.9° | 109.4° |
| O2C | PG | O3G | 111.3° | 109.5° |
| O2C | PG | O3B | 106.0° | 109.5° |
| PG | O2C | H14 | 109.5° | 114.0° |
| O3G | PG | O3B | 103.0° | 109.5° |
| PG | O3G | H1 | 109.5° | 114.0° |
| PG | O3B | PB | 126.2° | 134.0° |
| N4 | C4 | C5 | 121.2° | 120.2° |
| N4 | C4 | N3 | 119.2° | 120.2° |
| C4 | N4 | H10 | 120.0° | 120.0° |
| C4 | N4 | H11 | 120.0° | 120.0° |
| O2A | PA | O3A | 110.8° | 109.5° |
| O2A | PA | O5' | 111.3° | 109.5° |
| PA | O2A | H3 | 109.5° | 114.0° |
| O3A | PA | O5' | 99.7° | 109.5° |
| PA | O3A | PB | 128.0° | 134.0° |
| PA | O5' | C5' | 124.1° | 123.1° |
| C4 | C5 | C6 | 117.9° | 119.0° |
| C5 | C4 | N3 | 119.6° | 119.6° |
| C4 | C5 | H12 | 121.1° | 120.5° |
| C5 | C6 | N1 | 120.2° | 119.3° |
| C6 | C5 | H12 | 121.0° | 120.6° |
| C5 | C6 | H13 | 119.9° | 120.3° |
| O3B | PB | O3A | 103.3° | 109.5° |
| O3B | PB | O2B | 109.6° | 109.5° |
| O3B | PB | O1B | 104.7° | 109.5° |
| O3A | PB | O2B | 113.1° | 109.5° |
| O3A | PB | O1B | 105.4° | 109.5° |
| C4 | N3 | C2 | 120.3° | 120.7° |
| C6 | N1 | C2 | 120.3° | 120.3° |
| C6 | N1 | C1' | 121.4° | 119.9° |
| N1 | C6 | H13 | 119.9° | 120.4° |
| O2B | PB | O1B | 119.2° | 109.5° |
| PB | O1B | H2 | 109.5° | 114.0° |
| O5' | C5' | C4' | 108.1° | 109.5° |
| O5' | C5' | H4 | 109.8° | 109.5° |
| O5' | C5' | H5 | 109.8° | 109.4° |
| N3 | C2 | N1 | 121.7° | 121.1° |
| N3 | C2 | O2 | 118.5° | 119.5° |
| C2 | N1 | C1' | 118.2° | 119.8° |
| N1 | C2 | O2 | 119.8° | 119.5° |
| N1 | C1' | C2' | 108.9° | 108.7° |
| N1 | C1' | O4' | 110.2° | 108.7° |
| N1 | C1' | H9 | 109.1° | 108.5° |
| C5' | C4' | S3' | 110.4° | 110.8° |
| C5' | C4' | O4' | 108.9° | 110.8° |
| C4' | C5' | H4 | 109.8° | 109.5° |
| C4' | C5' | H5 | 109.8° | 109.5° |
| C5' | C4' | H6 | 110.0° | 110.7° |
| C2' | S3' | C4' | 89.4° | 93.5° |
| S3' | C2' | C1' | 107.5° | 100.6° |
| S3' | C2' | H7 | 109.9° | 111.2° |
| S3' | C2' | H8 | 110.0° | 111.2° |
| S3' | C4' | O4' | 108.8° | 102.6° |
| S3' | C4' | H6 | 107.1° | 110.9° |
| C2' | C1' | O4' | 110.3° | 113.4° |
| C1' | C2' | H7 | 110.0° | 111.1° |
| C1' | C2' | H8 | 110.0° | 111.2° |
| C2' | C1' | H9 | 108.4° | 108.7° |
| C4' | O4' | C1' | 112.5° | 116.7° |
| O4' | C4' | H6 | 111.6° | 110.8° |
| O4' | C1' | H9 | 109.8° | 108.7° |
| H4 | C5' | H5 | 109.5° | 109.4° |
| H7 | C2' | H8 | 109.5° | 111.1° |
| H10 | N4 | H11 | 120.0° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1G | PG | O2C | O3G | 133.7° | 119.9° |
| O1G | PG | O2C | O3B | 115.1° | 120.0° |
| O1G | PG | O3G | O3B | 113.6° | 120.0° |
| O1G | PG | O3B | PB | 128.7° | 40.0° |
| O1G | PG | O3G | H1 | 0.0° | 60.0° |
| O1G | PG | O2C | H14 | 0.0° | 180.0° |
| O1A | PA | O2A | O3A | 123.4° | 120.0° |
| O1A | PA | O2A | O5' | 126.5° | 120.0° |
| O1A | PA | O3A | O5' | 112.0° | 120.0° |
| O1A | PA | O3A | PB | 166.8° | 45.1° |
| O1A | PA | O5' | C5' | 170.9° | 55.0° |
| O1A | PA | O2A | H3 | 0.0° | 180.0° |
| O2C | PG | O3G | O3B | 113.2° | 120.1° |
| O2C | PG | O3B | PB | 7.0° | 80.0° |
| O2C | PG | O3G | H1 | 133.2° | 59.9° |
| O3G | PG | O3B | PB | 110.0° | 160.0° |
| O3G | PG | O2C | H14 | 133.7° | 60.1° |
| PG | O3B | PB | O3A | 77.4° | 165.0° |
| PG | O3B | PB | O2B | 43.5° | 45.0° |
| PG | O3B | PB | O1B | 172.5° | 75.0° |
| O3B | PG | O3G | H1 | 113.6° | 180.0° |
| O3B | PG | O2C | H14 | 115.1° | 60.0° |
| N4 | C4 | C5 | N3 | 180.0° | 179.9° |
| N4 | C4 | C5 | C6 | 179.8° | 179.7° |
| N4 | C4 | N3 | C2 | 179.3° | 180.0° |
| C4 | N4 | H10 | H11 | 180.0° | 180.0° |
| N4 | C4 | C5 | H12 | 0.2° | 0.1° |
| O2A | PA | O3A | O5' | 117.4° | 120.0° |
| O2A | PA | O3A | PB | 36.2° | 75.0° |
| O2A | PA | O5' | C5' | 38.5° | 65.0° |
| PA | O3A | PB | O3B | 130.1° | 160.0° |
| PA | O3A | PB | O2B | 11.6° | 40.0° |
| PA | O3A | PB | O1B | 120.3° | 80.0° |
| O3A | PA | O5' | C5' | 78.5° | 175.0° |
| O3A | PA | O2A | H3 | 123.4° | 60.0° |
| O5' | PA | O3A | PB | 81.2° | 165.0° |
| PA | O5' | C5' | C4' | 154.7° | 180.0° |
| O5' | PA | O2A | H3 | 126.6° | 60.0° |
| PA | O5' | C5' | H4 | 85.5° | 60.0° |
| PA | O5' | C5' | H5 | 35.0° | 60.0° |
| C4 | C5 | C6 | H12 | 180.0° | 179.8° |
| C4 | C5 | C6 | N1 | 0.7° | 0.5° |
| C5 | C4 | N3 | C2 | 0.8° | 0.1° |
| C5 | C4 | N4 | H10 | 180.0° | 180.0° |
| C5 | C4 | N4 | H11 | 0.0° | 0.0° |
| C4 | C5 | C6 | H13 | 179.3° | 180.0° |
| C6 | C5 | C4 | N3 | 0.2° | 0.2° |
| C5 | C6 | N1 | H13 | 180.0° | 179.5° |
| C5 | C6 | N1 | C2 | 2.4° | 0.5° |
| C5 | C6 | N1 | C1' | 179.1° | 179.7° |
| O3B | PB | O3A | O2B | 118.4° | 120.0° |
| O3B | PB | O3A | O1B | 109.7° | 120.0° |
| O3B | PB | O2B | O1B | 120.6° | 120.0° |
| O3B | PB | O1B | H2 | 123.0° | 60.0° |
| O3A | PB | O2B | O1B | 124.7° | 120.0° |
| O3A | PB | O1B | H2 | 128.4° | 60.0° |
| C4 | N3 | C2 | N1 | 2.6° | 0.1° |
| C4 | N3 | C2 | O2 | 179.9° | 180.0° |
| N3 | C4 | N4 | H10 | 0.0° | 0.0° |
| N3 | C4 | N4 | H11 | 180.0° | 180.0° |
| N3 | C4 | C5 | H12 | 179.9° | 180.0° |
| C6 | N1 | C2 | N3 | 3.4° | 0.2° |
| C6 | N1 | C2 | C1' | 176.8° | 179.7° |
| C6 | N1 | C2 | O2 | 179.1° | 179.7° |
| C6 | N1 | C1' | C2' | 76.1° | 119.7° |
| C6 | N1 | C1' | O4' | 45.0° | 4.2° |
| C6 | N1 | C1' | H9 | 165.7° | 122.2° |
| N1 | C6 | C5 | H12 | 179.3° | 179.7° |
| O2B | PB | O1B | H2 | 0.0° | 180.0° |
| O5' | C5' | C4' | H4 | 119.8° | 120.0° |
| O5' | C5' | C4' | H5 | 119.8° | 120.0° |
| O5' | C5' | C4' | S3' | 62.6° | 53.2° |
| O5' | C5' | C4' | O4' | 56.7° | 60.0° |
| O5' | C5' | H4 | H5 | 120.6° | 119.9° |
| O5' | C5' | C4' | H6 | 179.4° | 176.7° |
| N3 | C2 | N1 | O2 | 177.5° | 180.0° |
| N3 | C2 | N1 | C1' | 179.8° | 180.0° |
| C2 | N1 | C1' | C2' | 100.7° | 60.0° |
| C2 | N1 | C1' | O4' | 138.2° | 176.1° |
| C2 | N1 | C1' | H9 | 17.5° | 58.1° |
| C2 | N1 | C6 | H13 | 177.6° | 180.0° |
| C1' | N1 | C2 | O2 | 2.3° | 0.0° |
| N1 | C1' | C2' | S3' | 101.4° | 98.8° |
| N1 | C1' | C2' | O4' | 121.1° | 121.0° |
| N1 | C1' | C2' | H9 | 118.6° | 117.9° |
| N1 | C1' | O4' | C4' | 124.0° | 122.7° |
| N1 | C1' | O4' | H9 | 120.3° | 117.9° |
| N1 | C1' | C2' | H7 | 138.9° | 143.4° |
| N1 | C1' | C2' | H8 | 18.3° | 19.1° |
| C1' | N1 | C6 | H13 | 0.9° | 0.3° |
| C5' | C4' | S3' | C2' | 151.0° | 151.1° |
| C5' | C4' | S3' | O4' | 119.5° | 118.3° |
| C5' | C4' | S3' | H6 | 119.7° | 123.4° |
| C5' | C4' | O4' | H6 | 121.6° | 123.3° |
| C5' | C4' | O4' | C1' | 145.8° | 143.2° |
| C4' | C5' | H4 | H5 | 120.6° | 120.0° |
| S3' | C2' | C1' | H7 | 119.7° | 117.8° |
| S3' | C2' | C1' | H8 | 119.7° | 117.9° |
| C2' | S3' | C4' | O4' | 31.6° | 32.8° |
| S3' | C2' | C1' | O4' | 19.7° | 22.3° |
| C2' | S3' | C4' | H6 | 89.3° | 85.5° |
| S3' | C2' | H7 | H8 | 120.9° | 124.4° |
| S3' | C2' | C1' | H9 | 140.0° | 143.3° |
| C4' | S3' | C2' | C1' | 28.6° | 31.0° |
| S3' | C4' | O4' | H6 | 118.0° | 118.4° |
| S3' | C4' | O4' | C1' | 25.4° | 24.9° |
| S3' | C4' | C5' | H4 | 177.6° | 173.2° |
| S3' | C4' | C5' | H5 | 57.1° | 66.8° |
| C4' | S3' | C2' | H7 | 91.1° | 86.8° |
| C4' | S3' | C2' | H8 | 148.3° | 148.9° |
| C2' | C1' | O4' | C4' | 3.7° | 1.7° |
| C2' | C1' | O4' | H9 | 119.4° | 121.1° |
| C1' | C2' | H7 | H8 | 120.9° | 124.4° |
| O4' | C4' | C5' | H4 | 63.1° | 60.0° |
| O4' | C4' | C5' | H5 | 176.5° | 180.0° |
| C4' | O4' | C1' | H9 | 115.7° | 119.3° |
| C1' | O4' | C4' | H6 | 92.6° | 93.5° |
| O4' | C1' | C2' | H7 | 100.0° | 95.5° |
| O4' | C1' | C2' | H8 | 139.4° | 140.1° |
| H4 | C5' | C4' | H6 | 59.6° | 63.3° |
| H5 | C5' | C4' | H6 | 60.8° | 56.7° |
| H7 | C2' | C1' | H9 | 20.3° | 25.5° |
| H8 | C2' | C1' | H9 | 100.3° | 98.8° |
| H12 | C5 | C6 | H13 | 0.7° | 0.3° |
