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SummaryGeometryRelated PDB entries

1NY

Bonds
First atomSecond atomBond order typeDistance
(experimental model)		Distance
(ideal model)		Properties
CABCBDsing1.53Å1.50Å
CASCBDsing1.53Å1.55Å
CASCARsing1.50Å1.57Å
CAACBDsing1.53Å1.54Å
CBDCBCsing1.51Å1.57Å
CARCAYdoub1.34Å1.41Å
CBCCAGdoub1.38Å1.40ÅAromatic
CBCCAXsing1.40Å1.46ÅAromatic
CAYCAXsing1.48Å1.42Å
CAYCBBsing1.48Å1.40Å
CALCBBdoub1.39Å1.39ÅAromatic
CALCAJsing1.38Å1.39ÅAromatic
CAGCAFsing1.38Å1.41ÅAromatic
CAXCAHdoub1.39Å1.40ÅAromatic
CBBCAMsing1.39Å1.42ÅAromatic
CAJCAIdoub1.38Å1.40ÅAromatic
CAMCAKdoub1.38Å1.39ÅAromatic
CAFCAVdoub1.40Å1.40ÅAromatic
CAHCAVsing1.39Å1.41ÅAromatic
CAICAKsing1.38Å1.40ÅAromatic
CAVCAWsing1.48Å1.40Å
CAWNATsing1.35Å1.35Å
CAWOADdoub1.22Å1.24Å
NATCAZsing1.39Å1.35Å
CAZCAOdoub1.39Å1.40ÅAromatic
CAZCANsing1.39Å1.41ÅAromatic
CAOCAQsing1.38Å1.41ÅAromatic
CANCAPdoub1.38Å1.40ÅAromatic
CAQCBAdoub1.40Å1.39ÅAromatic
CAPCBAsing1.40Å1.43ÅAromatic
CBACAUsing1.47Å1.43Å
CAUOAEdoub1.21Å1.26Å
CAUOACsing1.35Å1.27Å
CANH1sing1.08Å1.08Å
CAPH2sing1.08Å1.08Å
OACH3sing0.97Å0.95Å
CAQH4sing1.08Å1.08Å
CAOH5sing1.08Å1.08Å
NATH6sing0.97Å1.00Å
CAHH7sing1.08Å1.08Å
CAFH8sing1.08Å1.08Å
CAGH9sing1.08Å1.08Å
CAAH10sing1.09Å1.10Å
CAAH11sing1.09Å1.10Å
CAAH12sing1.09Å1.10Å
CABH13sing1.09Å1.10Å
CABH14sing1.09Å1.10Å
CABH15sing1.09Å1.10Å
CASH16sing1.09Å1.10Å
CASH17sing1.09Å1.10Å
CARH18sing1.08Å1.08Å
CALH21sing1.08Å1.08Å
CAJH22sing1.08Å1.08Å
CAIH23sing1.08Å1.08Å
CAKH24sing1.08Å1.08Å
CAMH25sing1.08Å1.08Å
Angles
First atomSecond atomThird atomAngle
(experimental model)		Angle
(ideal model)
CABCBDCAS113.1°109.3°
CABCBDCAA102.5°109.4°
CABCBDCBC115.8°109.4°
CBDCABH13109.5°109.4°
CBDCABH14109.5°109.5°
CBDCABH15109.5°109.5°
CBDCASCAR105.5°110.7°
CASCBDCAA107.1°109.4°
CASCBDCBC112.1°109.9°
CBDCASH16110.4°109.2°
CBDCASH17110.5°109.2°
CASCARCAY112.5°120.9°
CARCASH16110.4°109.2°
CARCASH17110.4°109.3°
CASCARH18123.8°119.5°
CAACBDCBC105.1°109.4°
CBDCAAH10109.5°109.5°
CBDCAAH11109.4°109.5°
CBDCAAH12109.5°109.5°
CBDCBCCAG122.3°120.5°
CBDCBCCAX116.0°119.4°
CARCAYCAX121.0°119.1°
CARCAYCBB112.8°120.4°
CAYCARH18123.8°119.5°
CAGCBCCAX119.3°120.1°
CBCCAGCAF121.2°120.1°
CBCCAGH9119.4°119.9°
CBCCAXCAY121.4°119.0°
CBCCAXCAH116.5°120.2°
CAXCAYCBB125.6°120.5°
CAYCAXCAH121.9°120.8°
CAYCBBCAL122.8°120.2°
CAYCBBCAM117.9°120.1°
CBBCALCAJ119.0°119.9°
CALCBBCAM118.7°119.7°
CBBCALH21120.5°120.0°
CALCAJCAI122.2°120.2°
CAJCALH21120.5°120.1°
CALCAJH22118.9°119.9°
CAGCAFCAV118.5°120.2°
CAGCAFH8120.8°119.9°
CAFCAGH9119.4°119.9°
CAXCAHCAV122.4°119.5°
CAXCAHH7118.8°120.3°
CBBCAMCAK121.7°119.9°
CBBCAMH25119.2°120.0°
CAJCAICAK118.8°120.2°
CAICAJH22118.9°119.9°
CAJCAIH23120.6°119.9°
CAMCAKCAI119.4°120.1°
CAMCAKH24120.3°120.0°
CAKCAMH25119.2°120.1°
CAFCAVCAH120.3°119.8°
CAFCAVCAW121.1°120.1°
CAVCAFH8120.8°119.9°
CAHCAVCAW118.6°120.1°
CAVCAHH7118.8°120.2°
CAKCAIH23120.6°119.8°
CAICAKH24120.3°119.9°
CAVCAWNAT114.9°120.0°
CAVCAWOAD119.5°120.0°
NATCAWOAD125.5°120.0°
CAWNATCAZ124.4°120.0°
CAWNATH6117.9°120.0°
NATCAZCAO118.3°119.9°
NATCAZCAN123.4°120.0°
CAZNATH6117.8°120.0°
CAOCAZCAN117.8°120.1°
CAZCAOCAQ122.7°120.1°
CAZCAOH5118.6°119.9°
CAZCANCAP119.5°120.1°
CAZCANH1120.2°119.9°
CAOCAQCBA120.5°119.9°
CAOCAQH4119.8°120.0°
CAQCAOH5118.6°120.0°
CANCAPCBA122.8°119.9°
CAPCANH1120.3°119.9°
CANCAPH2118.6°120.1°
CAQCBACAP116.7°119.8°
CAQCBACAU122.4°120.1°
CBACAQH4119.7°120.1°
CAPCBACAU120.8°120.1°
CBACAPH2118.6°120.0°
CBACAUOAE123.4°120.0°
CBACAUOAC118.8°120.0°
OAECAUOAC117.1°120.0°
CAUOACH3109.5°117.0°
H10CAAH11109.5°109.5°
H10CAAH12109.4°109.5°
H11CAAH12109.5°109.5°
H13CABH14109.5°109.5°
H13CABH15109.4°109.5°
H14CABH15109.5°109.5°
H16CASH17109.5°109.2°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)		Torsion
(ideal model)
CABCBDCASCAA112.1°119.7°
CABCBDCASCBC133.1°120.1°
CABCBDCASCAR171.3°171.0°
CABCBDCAACBC121.4°119.8°
CABCBDCBCCAG7.2°25.1°
CABCBDCBCCAX155.0°155.3°
CABCBDCAAH10180.0°59.8°
CABCBDCAAH1160.0°60.2°
CABCBDCAAH1260.0°179.8°
CBDCABH13H14120.0°120.0°
CBDCABH13H15120.0°120.0°
CBDCABH14H15120.0°120.0°
CABCBDCASH1651.9°68.7°
CABCBDCASH1769.3°50.6°
CBDCASCARH16119.4°120.3°
CBDCASCARH17119.4°120.3°
CASCBDCAACBC119.4°120.5°
CBDCASCARCAY61.2°35.4°
CASCBDCBCCAG138.9°145.1°
CASCBDCBCCAX23.3°35.2°
CASCBDCAAH1060.8°179.5°
CASCBDCAAH11179.2°59.5°
CASCBDCAAH1259.2°60.5°
CASCBDCABH13180.0°60.5°
CASCBDCABH1460.0°59.5°
CASCBDCABH1560.0°179.5°
CBDCASH16H17121.9°119.3°
CBDCASCARH18118.8°144.2°
CARCASCBDCAA59.2°69.3°
CARCASCBDCBC55.6°50.8°
CASCARCAYH18180.0°179.6°
CASCARCAYCAX32.1°0.2°
CASCARCAYCBB156.2°179.5°
CARCASH16H17121.8°119.5°
CAACBDCBCCAG105.1°94.7°
CAACBDCBCCAX92.7°84.9°
CBDCAAH10H11120.0°120.0°
CBDCAAH10H12120.0°120.0°
CBDCAAH11H12120.0°120.0°
CAACBDCABH1365.1°179.8°
CAACBDCABH14174.9°60.2°
CAACBDCABH1554.9°59.8°
CAACBDCASH1660.2°51.0°
CAACBDCASH17178.6°170.3°
CBDCBCCAGCAX161.6°179.7°
CBDCBCCAXCAY9.3°0.2°
CBDCBCCAGCAF178.2°179.9°
CBDCBCCAXCAH176.0°179.9°
CBDCBCCAGH91.9°0.2°
CBCCBDCAAH1058.6°60.0°
CBCCBDCAAH1161.4°180.0°
CBCCBDCAAH12178.6°60.0°
CBCCBDCABH1348.7°60.0°
CBCCBDCABH1471.3°180.0°
CBCCBDCABH15168.7°60.0°
CBCCBDCASH16174.9°171.2°
CBCCBDCASH1763.8°69.5°
CARCAYCAXCBC4.8°19.4°
CARCAYCAXCBB170.5°179.3°
CARCAYCBBCAL55.1°114.6°
CARCAYCAXCAH179.2°160.5°
CARCAYCBBCAM115.9°65.0°
CAYCARCASH16179.4°155.7°
CAYCARCASH1758.2°84.9°
CAGCBCCAXCAY172.1°179.9°
CBCCAGCAFH9180.0°179.9°
CAGCBCCAXCAH13.2°0.2°
CBCCAGCAFCAV12.3°0.0°
CBCCAGCAFH8167.7°179.9°
CBCCAXCAYCAH174.4°179.9°
CBCCAXCAYCBB165.7°161.3°
CAXCBCCAGCAF16.5°0.2°
CBCCAXCAHCAV6.6°0.0°
CBCCAXCAHH7173.4°179.9°
CAXCBCCAGH9163.5°179.9°
CAXCAYCBBCAL133.7°66.1°
CAXCAYCBBCAM55.2°114.3°
CAYCAXCAHCAV178.7°179.9°
CAYCAXCAHH71.3°0.1°
CAXCAYCARH18147.9°179.8°
CAYCBBCALCAM171.0°179.7°
CAYCBBCALCAJ176.6°180.0°
CBBCAYCAXCAH8.7°18.8°
CAYCBBCAMCAK175.3°179.7°
CBBCAYCARH1823.8°0.8°
CAYCBBCALH213.4°0.1°
CAYCBBCAMH254.6°0.1°
CBBCALCAJH21180.0°179.9°
CBBCALCAJCAI4.6°0.0°
CALCBBCAMCAK3.9°0.6°
CBBCALCAJH22175.4°180.0°
CALCBBCAMH25176.1°179.7°
CAJCALCBBCAM5.6°0.3°
CALCAJCAIH22180.0°180.0°
CALCAJCAICAK1.6°0.0°
CALCAJCAIH23178.4°180.0°
CAGCAFCAVH8180.0°179.9°
CAGCAFCAVCAH5.3°0.2°
CAGCAFCAVCAW174.8°179.9°
CAXCAHCAVCAF2.7°0.2°
CAXCAHCAVH7180.0°180.0°
CAXCAHCAVCAW177.3°180.0°
CBBCAMCAKH25180.0°179.6°
CBBCAMCAKCAI0.9°0.6°
CAMCBBCALH21174.4°179.8°
CBBCAMCAKH24179.1°179.7°
CAJCAICAKCAM0.3°0.3°
CAJCAICAKH23180.0°180.0°
CAICAJCALH21175.4°179.9°
CAJCAICAKH24179.7°180.0°
CAMCAKCAIH24180.0°179.7°
CAMCAKCAIH23179.7°179.7°
CAFCAVCAHCAW179.9°179.7°
CAFCAVCAWNAT4.4°0.3°
CAFCAVCAWOAD178.6°179.7°
CAFCAVCAHH7177.2°179.8°
CAVCAFCAGH9167.7°180.0°
CAHCAVCAWNAT175.5°179.9°
CAHCAVCAWOAD1.5°0.0°
CAHCAVCAFH8174.8°179.8°
CAKCAICAJH22178.4°180.0°
CAICAKCAMH25179.1°179.7°
CAVCAWNATOAD176.8°180.0°
CAVCAWNATCAZ170.6°175.4°
CAVCAWNATH69.4°4.7°
CAWCAVCAHH72.7°0.0°
CAWCAVCAFH85.2°0.1°
CAWNATCAZH6180.0°179.9°
CAWNATCAZCAO176.5°145.0°
CAWNATCAZCAN12.2°35.6°
OADCAWNATCAZ12.6°4.5°
OADCAWNATH6167.4°175.3°
NATCAZCAOCAN171.8°179.4°
NATCAZCAOCAQ173.1°179.9°
NATCAZCANCAP173.7°180.0°
NATCAZCANH16.3°0.3°
NATCAZCAOH56.9°0.3°
CAZCAOCAQH5180.0°179.6°
CAOCAZCANCAP2.3°0.6°
CAZCAOCAQCBA0.6°0.4°
CAOCAZCANH1177.7°179.7°
CAZCAOCAQH4179.4°179.7°
CAOCAZNATH63.5°35.2°
CANCAZCAOCAQ1.3°0.6°
CAZCANCAPH1180.0°179.7°
CAZCANCAPCBA1.6°0.3°
CAZCANCAPH2178.4°179.7°
CANCAZCAOH5178.8°179.7°
CANCAZNATH6167.8°144.3°
CAOCAQCBAH4180.0°179.9°
CAOCAQCBACAP1.4°0.0°
CAOCAQCBACAU178.6°179.9°
CANCAPCBACAQ0.3°0.0°
CANCAPCBAH2180.0°180.0°
CANCAPCBACAU177.5°180.0°
CAQCBACAPCAU177.2°180.0°
CAQCBACAUOAE9.3°180.0°
CAQCBACAUOAC161.3°0.0°
CAQCBACAPH2179.7°180.0°
CBACAQCAOH5179.3°180.0°
CAPCBACAUOAE173.6°0.1°
CAPCBACAUOAC15.7°180.0°
CBACAPCANH1178.4°180.0°
CAPCBACAQH4178.7°179.9°
CBACAUOAEOAC170.8°179.9°
CAUCBACAPH22.5°0.0°
CBACAUOACH3171.2°180.0°
CAUCBACAQH41.5°0.0°
OAECAUOACH30.0°0.1°
H1CANCAPH21.6°0.0°
H4CAQCAOH50.6°0.1°
H8CAFCAGH912.3°0.0°
H10CAAH11H12120.0°120.0°
H13CABH14H15120.0°120.1°
H16CASCARH180.6°23.9°
H17CASCARH18121.8°95.5°
H21CALCAJH224.6°0.1°
H22CAJCAIH231.6°0.0°
H23CAICAKH240.3°0.0°
H24CAKCAMH251.0°0.0°

223532

PDB entries from 2024-08-07

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