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1DS

Bonds
First atomSecond atomBond order typeDistance
(experimental model)
Distance
(ideal model)
Properties
O6C6sing1.43Å1.40Å
C6C5sing1.53Å1.52Å
O2C2sing1.43Å1.41Å
C5O5sing1.43Å1.43Å
C5C4sing1.53Å1.52Å
O5C1sing1.43Å1.42Å
O4C4sing1.43Å1.40Å
C2C1sing1.53Å1.51Å
C2C3sing1.53Å1.55Å
C4C3sing1.53Å1.49Å
C1O1sing1.43Å1.45Å
O3C3sing1.43Å1.40Å
O1C2'sing1.43Å1.47Å
O2'C2'sing1.44Å1.43Å
O2'C5'sing1.45Å1.48Å
C2'C1'sing1.53Å1.48Å
C2'C3'sing1.54Å1.52Å
C1'O1'sing1.45Å1.42Å
C6'C5'sing1.53Å1.50Å
C6'O6'sing1.43Å1.39Å
C5'C4'sing1.55Å1.47Å
O3'C3'sing1.43Å1.42Å
C3'C4'sing1.55Å1.42Å
O1'C1Nsing1.34Å1.41Å
C4'O4'sing1.43Å1.45Å
O1NC1Ndoub1.21Å1.27Å
C1NC2Nsing1.51Å1.57Å
C2NC3Nsing1.53Å1.50Å
C3NC4Nsing1.53Å1.57Å
C4NC5Nsing1.53Å1.52Å
O6H1sing0.97Å0.95Å
C6H2sing1.09Å1.10Å
C6H3sing1.09Å1.10Å
C5H4sing1.09Å1.10Å
C4H5sing1.09Å1.10Å
C3H6sing1.09Å1.10Å
C2H7sing1.09Å1.10Å
C1H8sing1.09Å1.10Å
C3'H9sing1.09Å1.10Å
C4'H10sing1.09Å1.10Å
C5'H11sing1.09Å1.10Å
C6'H12sing1.09Å1.10Å
C6'H13sing1.09Å1.10Å
O6'H14sing0.97Å0.95Å
O4'H15sing0.97Å0.95Å
O3'H16sing0.97Å0.95Å
C1'H17sing1.09Å1.10Å
C1'H18sing1.09Å1.10Å
O2H19sing0.97Å0.95Å
O3H20sing0.97Å0.95Å
O4H21sing0.97Å0.95Å
C2NH22sing1.09Å1.10Å
C2NH23sing1.09Å1.10Å
C3NH24sing1.09Å1.10Å
C3NH25sing1.09Å1.10Å
C4NH26sing1.09Å1.10Å
C4NH27sing1.09Å1.10Å
C5NH28sing1.09Å1.10Å
C5NH29sing1.09Å1.10Å
C5NC7sing1.53Å96.66Å
C7C8sing1.53Å0.00Å
C8C9sing1.53Å0.00Å
C9C10sing1.53Å0.00Å
C10C11sing1.53Å0.00Å
C7H30sing1.09Å0.00Å
C7H31sing1.09Å0.00Å
C8H32sing1.09Å0.00Å
C8H33sing1.09Å0.00Å
C9H34sing1.09Å0.00Å
C9H35sing1.09Å0.00Å
C10H36sing1.09Å0.00Å
C10H37sing1.09Å0.00Å
C11H38sing1.09Å0.00Å
C11H39sing1.09Å0.00Å
C11H40sing1.09Å0.00Å
Angles
First atomSecond atomThird atomAngle
(experimental model)
Angle
(ideal model)
O6C6C5111.9°109.5°
C6O6H1109.5°114.1°
O6C6H2108.8°109.4°
O6C6H3108.9°109.4°
C6C5O5114.5°109.5°
C6C5C4115.5°109.5°
C5C6H2108.8°109.5°
C5C6H3108.8°109.5°
C6C5H4105.7°109.5°
O2C2C1110.1°109.5°
O2C2C3123.2°109.5°
O2C2H7106.9°109.5°
C2O2H19109.5°114.0°
O5C5C4108.2°109.4°
C5O5C1117.1°114.1°
O5C5H4106.7°109.4°
C5C4O4115.8°109.5°
C5C4C3108.5°109.2°
C4C5H4105.6°109.5°
C5C4H5106.7°109.5°
O5C1C2107.9°109.4°
O5C1O1118.1°109.5°
O5C1H8108.8°109.5°
O4C4C3110.2°109.5°
O4C4H5108.2°109.6°
C4O4H21109.5°114.0°
C1C2C3104.1°109.2°
C2C1O1105.5°109.5°
C1C2H7105.9°109.5°
C2C1H8107.7°109.5°
C2C3C4112.5°109.0°
C2C3O3117.4°109.6°
C2C3H6103.5°109.5°
C3C2H7105.4°109.5°
C4C3O3112.7°109.5°
C3C4H5107.1°109.5°
C4C3H6104.0°109.6°
C1O1C2'129.5°114.0°
O1C1H8108.4°109.5°
O3C3H6105.0°109.6°
C3O3H20109.5°114.0°
O1C2'O2'112.3°109.9°
O1C2'C1'102.1°109.9°
O1C2'C3'121.0°109.9°
C2'O2'C5'109.7°106.9°
O2'C2'C1'112.7°109.9°
O2'C2'C3'98.0°107.4°
O2'C5'C6'116.2°110.8°
O2'C5'C4'106.7°103.6°
O2'C5'H11105.4°110.5°
C1'C2'C3'111.2°109.9°
C2'C1'O1'111.5°109.5°
C2'C1'H17108.9°109.5°
C2'C1'H18109.0°109.4°
C2'C3'O3'113.1°110.5°
C2'C3'C4'108.9°104.2°
C2'C3'H9110.0°110.4°
C1'O1'C1N127.8°117.0°
O1'C1'H17109.0°109.5°
O1'C1'H18109.0°109.5°
C5'C6'O6'114.3°109.4°
C6'C5'C4'116.8°110.6°
C6'C5'H11105.2°110.6°
C5'C6'H12108.2°109.5°
C5'C6'H13108.3°109.5°
O6'C6'H12108.2°109.4°
O6'C6'H13108.2°109.4°
C6'O6'H14109.5°114.0°
C5'C4'C3'98.3°102.1°
C5'C4'O4'116.8°110.9°
C5'C4'H10108.5°111.0°
C4'C5'H11105.4°110.6°
O3'C3'C4'102.0°110.5°
O3'C3'H9111.3°110.6°
C3'O3'H16109.5°114.0°
C3'C4'O4'114.7°110.9°
C4'C3'H9111.3°110.5°
C3'C4'H10109.2°110.9°
O1'C1NO1N121.0°120.0°
O1'C1NC2N112.1°120.0°
O4'C4'H10108.8°110.8°
C4'O4'H15109.5°114.0°
O1NC1NC2N125.6°120.0°
C1NC2NC3N117.7°109.5°
C1NC2NH22107.4°109.5°
C1NC2NH23107.4°109.4°
C2NC3NC4N109.1°109.5°
C3NC2NH22107.4°109.5°
C3NC2NH23107.3°109.5°
C2NC3NH24109.6°109.5°
C2NC3NH25109.6°109.5°
C3NC4NC5N115.0°109.5°
C4NC3NH24109.5°109.4°
C4NC3NH25109.6°109.4°
C3NC4NH26108.1°109.4°
C3NC4NH27108.1°109.4°
C5NC4NH26108.1°109.5°
C5NC4NH27108.1°109.5°
C4NC5NH28103.8°109.5°
C4NC5NH29103.8°109.4°
C4NC5NC7131.2°109.5°
H2C6H3109.5°109.4°
H12C6'H13109.5°109.5°
H17C1'H18109.5°109.4°
H22C2NH23109.5°109.5°
H24C3NH25109.5°109.5°
H26C4NH27109.5°109.5°
H28C5NH29109.5°109.5°
H28C5NC7103.8°109.6°
H29C5NC7103.8°109.4°
C5NC7C890.0°109.5°
C5NC7H3090.0°109.5°
C5NC7H3190.0°109.4°
C7C8C990.0°109.5°
C8C7H3090.0°109.5°
C8C7H3190.0°109.4°
C7C8H3290.0°109.5°
C7C8H3390.0°109.4°
C8C9C1090.0°109.5°
C9C8H3290.0°109.5°
C9C8H3390.0°109.5°
C8C9H3490.0°109.4°
C8C9H3590.0°109.5°
C9C10C1190.0°109.5°
C10C9H3490.0°109.5°
C10C9H3590.0°109.5°
C9C10H3690.0°109.5°
C9C10H3790.0°109.5°
C11C10H3690.0°109.5°
C11C10H3790.0°109.5°
C10C11H3890.0°109.5°
C10C11H3990.0°109.5°
C10C11H4090.0°109.5°
H30C7H3190.0°109.5°
H32C8H3390.0°109.5°
H34C9H3590.0°109.5°
H36C10H3790.0°109.4°
H38C11H3990.0°109.4°
H38C11H4090.0°109.5°
H39C11H4090.0°109.5°
Dihedrals
First atomSecond atomThird atomFourth atomTorsion
(experimental model)
Torsion
(ideal model)
O6C6C5H2120.3°120.0°
O6C6C5H3120.4°120.0°
O6C6C5O5173.7°65.4°
O6C6C5C459.7°174.6°
O6C6H2H3118.9°119.9°
O6C6C5H456.6°54.5°
C6C5O5C4130.3°120.0°
C6C5O5H4116.5°120.0°
C6C5C4H4116.4°120.1°
C6C5O5C1178.1°178.8°
C6C5C4O445.9°62.5°
C6C5C4C3170.4°177.6°
C5C6O6H1180.0°175.0°
C5C6H2H3118.9°120.0°
C6C5C4H574.6°57.7°
O2C2C1O566.9°177.6°
O2C2C1C3133.8°119.9°
O2C2C1H7115.2°120.1°
O2C2C3H7122.8°120.2°
O2C2C3C473.3°176.9°
O2C2C1O1166.0°62.5°
O2C2C3O359.9°57.0°
O2C2C3H6175.0°63.2°
O2C2C1H850.4°57.6°
O5C5C4H4113.9°119.9°
O5C5C4O4175.6°177.5°
C5O5C1C216.9°61.2°
O5C5C4C359.9°57.6°
C5O5C1O1102.5°178.8°
O5C5C6H253.3°54.6°
O5C5C6H366.0°174.6°
O5C5C4H555.1°62.3°
C5O5C1H8133.5°58.9°
C4C5O5C147.8°61.1°
C5C4O4C3123.6°119.7°
C5C4O4H5119.7°120.1°
C5C4C3C28.7°57.0°
C5C4C3H5114.8°119.9°
C5C4C3O3126.7°63.0°
C4C5C6H2179.9°65.4°
C4C5C6H360.6°54.6°
C5C4C3H6120.1°176.8°
C5C4O4H21180.0°180.0°
O5C1C2O1127.1°120.0°
O5C1C2H8117.3°120.0°
O5C1C2C366.9°57.6°
O5C1O1H8124.2°120.0°
O5C1O1C2'89.1°70.9°
C1O5C5H465.4°58.8°
O5C1C2H7177.9°62.3°
O4C4C3C2136.5°176.9°
O4C4C3H5117.5°120.2°
O4C4C3O31.0°57.0°
O4C4C5H470.5°57.6°
O4C4C3H6112.1°63.2°
C1C2C3H7111.3°119.9°
C1C2C3C452.6°57.0°
C2C1O1H8115.1°120.1°
C1C2C3O3174.1°62.9°
C2C1O1C2'150.3°169.2°
C1C2C3H659.0°176.9°
C1C2O2H19180.0°59.9°
C2C3C4O3135.5°119.9°
C2C3C4H6111.4°119.9°
C3C2C1O160.2°177.6°
C2C3O3H6114.3°120.2°
C2C3C4H5106.0°62.9°
C3C2C1H8175.7°62.4°
C3C2O2H1956.7°179.6°
C2C3O3H20180.0°60.4°
C4C3O3H6112.6°120.2°
C3C4C5H454.0°62.3°
C4C3C2H7163.9°62.9°
C4C3O3H2046.9°180.0°
C3C4O4H2156.4°60.3°
C1O1C2'O2'31.9°51.7°
C1O1C2'C1'89.1°172.7°
C1O1C2'C3'146.8°66.3°
O1C1C2H750.8°57.7°
O3C3C4H5118.5°177.1°
O3C3C2H762.8°177.2°
O1C2'O2'C1'114.6°121.0°
O1C2'O2'C3'128.3°119.5°
O1C2'O2'C5'146.3°145.8°
O1C2'C1'C3'130.5°121.0°
O1C2'C1'O1'125.1°54.9°
O1C2'C3'O3'48.9°2.7°
O1C2'C3'C4'161.5°121.5°
C2'O1C1H835.1°49.1°
O1C2'C3'H976.3°119.9°
O1C2'C1'H17114.6°65.1°
O1C2'C1'H184.8°174.9°
O2'C2'C1'C3'108.9°118.0°
O2'C2'C1'O1'114.3°66.1°
C2'O2'C5'C6'125.5°158.5°
C2'O2'C5'C4'6.7°39.9°
O2'C2'C3'O3'73.2°116.7°
O2'C2'C3'C4'39.5°2.0°
O2'C2'C3'H9161.7°120.6°
C2'O2'C5'H11118.5°78.6°
O2'C2'C1'H176.0°173.9°
O2'C2'C1'H18125.4°54.0°
C5'O2'C2'C1'99.1°93.2°
C5'O2'C2'C3'17.9°26.4°
O2'C5'C6'C4'127.5°114.2°
O2'C5'C6'H11116.1°122.9°
O2'C5'C6'O6'73.0°70.8°
O2'C5'C4'H11111.7°118.4°
O2'C5'C4'C3'29.7°37.0°
O2'C5'C4'O4'152.8°81.3°
O2'C5'C4'H1083.8°155.2°
O2'C5'C6'H1247.7°169.3°
O2'C5'C6'H13166.2°49.2°
C2'C1'O1'H17120.3°120.0°
C2'C1'O1'H18120.3°120.0°
C1'C2'C3'O3'168.6°123.7°
C1'C2'C3'C4'78.7°117.5°
C2'C1'O1'C1N123.1°175.1°
C1'C2'C3'H943.5°1.1°
C2'C1'H17H18119.1°119.9°
C3'C2'C1'O1'5.4°175.9°
C2'C3'C4'C5'43.4°20.9°
C2'C3'O3'C4'116.8°114.8°
C2'C3'O3'H9124.4°122.6°
C2'C3'C4'H9121.4°118.6°
C2'C3'C4'O4'168.0°97.4°
C2'C3'C4'H1069.6°139.1°
C2'C3'O3'H16180.0°180.0°
C3'C2'C1'H17114.9°55.9°
C3'C2'C1'H18125.7°64.1°
C1'O1'C1NO1N45.9°5.1°
C1'O1'C1NC2N146.1°175.0°
O1'C1'H17H18119.1°120.0°
C5'C6'O6'H12120.7°120.0°
C5'C6'O6'H13120.8°120.0°
C6'C5'C4'H11116.3°122.9°
C6'C5'C4'C3'102.2°155.7°
C6'C5'C4'O4'20.9°37.5°
C6'C5'C4'H10144.2°86.1°
C5'C6'H12H13117.8°120.1°
C5'C6'O6'H14180.0°180.0°
O6'C6'C5'C4'54.4°175.0°
O6'C6'C5'H11170.9°52.1°
O6'C6'H12H13117.8°119.9°
C5'C4'C3'O3'76.4°139.6°
C5'C4'C3'O4'124.6°118.2°
C5'C4'C3'H10113.0°118.3°
C5'C4'O4'H10123.2°123.7°
C5'C4'C3'H9164.8°97.7°
C4'C5'C6'H12175.1°55.1°
C4'C5'C6'H1366.3°65.0°
C5'C4'O4'H15180.0°67.3°
O3'C3'C4'H9118.8°122.7°
O3'C3'C4'O4'48.2°21.3°
O3'C3'C4'H10170.6°102.2°
C3'C4'O4'H10122.6°123.6°
C3'C4'C5'H11141.4°81.5°
C3'C4'O4'H1565.8°180.0°
C4'C3'O3'H1663.2°65.2°
O1'C1NO1NC2N166.3°179.9°
O1'C1NC2NC3N132.8°174.9°
C1NO1'C1'H17116.7°64.9°
C1NO1'C1'H182.8°55.1°
O1'C1NC2NH2211.6°54.9°
O1'C1NC2NH23106.0°65.1°
O4'C4'C3'H970.6°144.0°
O4'C4'C5'H1195.5°160.3°
O1NC1NC2NC3N34.5°5.0°
O1NC1NC2NH22155.7°125.0°
O1NC1NC2NH2386.7°115.0°
C1NC2NC3NH22121.2°120.0°
C1NC2NC3NH23121.2°119.9°
C1NC2NC3NC4N134.4°175.1°
C1NC2NH22H23116.2°120.0°
C1NC2NC3NH24105.6°55.1°
C1NC2NC3NH2514.5°64.9°
C2NC3NC4NH24119.9°120.0°
C2NC3NC4NH25119.9°120.0°
C2NC3NC4NC5N159.6°180.0°
C3NC2NH22H23116.2°120.0°
C2NC3NH24H25120.2°120.1°
C2NC3NC4NH2679.6°60.0°
C2NC3NC4NH2738.8°60.0°
C3NC4NC5NH26120.8°120.0°
C3NC4NC5NH27120.8°120.0°
C4NC3NC2NH2213.2°64.9°
C4NC3NC2NH23104.4°55.1°
C4NC3NH24H25120.2°119.9°
C3NC4NH26H27117.5°119.9°
C3NC4NC5NH28150.2°59.9°
C3NC4NC5NH2935.7°60.0°
C3NC4NC5NC787.1°179.9°
C5NC4NC3NH2439.6°60.0°
C5NC4NC3NH2580.5°60.0°
C5NC4NH26H27117.5°120.1°
C4NC5NH28H29110.3°120.0°
C4NC5NH28C7139.4°120.1°
C4NC5NH29C7139.4°119.9°
C4NC5NC7C890.0°180.0°
C4NC5NC7H3090.0°60.0°
C4NC5NC7H3190.0°60.1°
H1O6C6H259.6°64.9°
H1O6C6H359.7°55.0°
H2C6C5H463.7°174.6°
H3C6C5H4177.0°65.4°
H4C5C4H5169.0°177.8°
H5C4C3H65.3°56.9°
H5C4O4H2160.4°59.8°
H6C3C2H752.2°57.0°
H6C3O3H2065.7°59.8°
H7C2C1H864.8°177.7°
H7C2O2H1965.4°60.2°
H9C3'C4'H1051.8°20.5°
H9C3'O3'H1655.6°57.5°
H10C4'C5'H1127.9°36.8°
H10C4'O4'H1556.8°56.4°
H11C5'C6'H1268.4°67.8°
H11C5'C6'H1350.2°172.1°
H12C6'O6'H1459.3°60.0°
H13C6'O6'H1459.2°60.0°
H22C2NC3NH24133.2°175.1°
H22C2NC3NH25106.7°55.1°
H23C2NC3NH2415.5°64.8°
H23C2NC3NH25135.7°175.1°
H24C3NC4NH26160.4°180.0°
H24C3NC4NH2781.2°60.0°
H25C3NC4NH2640.3°60.0°
H25C3NC4NH27158.7°180.0°
H26C4NC5NH2889.1°179.9°
H26C4NC5NH29156.5°59.9°
H26C4NC5NC733.7°60.0°
H27C4NC5NH2829.4°60.0°
H27C4NC5NH2985.1°180.0°
H27C4NC5NC7152.1°60.1°
H28C5NH29C7110.3°120.1°
H28C5NC7C890.0°59.9°
H28C5NC7H3090.0°180.0°
H28C5NC7H3190.0°60.0°
H29C5NC7C890.0°60.1°
H29C5NC7H3090.0°60.0°
H29C5NC7H3190.0°180.0°
C5NC7C8H3090.0°120.1°
C5NC7C8H3190.0°119.9°
C5NC7C8C990.0°179.9°
C5NC7H30H3190.0°120.0°
C5NC7C8H3290.0°59.9°
C5NC7C8H3390.0°60.1°
C7C8C9H3290.0°120.0°
C7C8C9H3390.0°119.9°
C7C8C9C1090.0°180.0°
C8C7H30H3190.0°120.0°
C7C8H32H3390.0°120.0°
C7C8C9H3490.0°60.0°
C7C8C9H3590.0°60.1°
C8C9C10H3490.0°120.0°
C8C9C10H3590.0°120.0°
C8C9C10C1190.0°180.0°
C9C8C7H3090.0°60.0°
C9C8C7H3190.0°60.0°
C9C8H32H3390.0°120.0°
C8C9H34H3590.0°120.0°
C8C9C10H3690.0°60.0°
C8C9C10H3790.0°60.0°
C9C10C11H3690.0°120.1°
C9C10C11H3790.0°120.0°
C10C9C8H3290.0°60.0°
C10C9C8H3390.0°60.0°
C10C9H34H3590.0°120.0°
C9C10H36H3790.0°120.0°
C9C10C11H3890.0°180.0°
C9C10C11H3990.0°60.0°
C9C10C11H4090.0°60.0°
C11C10C9H3490.0°60.0°
C11C10C9H3590.0°60.0°
C11C10H36H3790.0°120.0°
C10C11H38H3990.0°120.0°
C10C11H38H4090.0°120.0°
C10C11H39H4090.0°120.0°
H30C7C8H3290.0°180.0°
H30C7C8H3390.0°60.0°
H31C7C8H3290.0°60.0°
H31C7C8H3390.0°180.0°
H32C8C9H3490.0°180.0°
H32C8C9H3590.0°60.0°
H33C8C9H3490.0°60.0°
H33C8C9H3590.0°180.0°
H34C9C10H3690.0°179.9°
H34C9C10H3790.0°60.0°
H35C9C10H3690.0°60.0°
H35C9C10H3790.0°180.0°
H36C10C11H3890.0°59.9°
H36C10C11H3990.0°179.9°
H36C10C11H4090.0°60.1°
H37C10C11H3890.0°60.0°
H37C10C11H3990.0°60.0°
H37C10C11H4090.0°180.0°
H38C11H39H4090.0°120.0°

246704

PDB entries from 2025-12-24

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