137
Bonds
| First atom | Second atom | Bond order type | Distance (experimental model) | Distance (ideal model) | Properties |
| P | O1P | doub | 1.48Å | 1.45Å | |
| P | O2P | sing | 1.61Å | 1.49Å | |
| P | O3P | sing | 1.61Å | 1.50Å | |
| P | O5' | sing | 1.61Å | 1.50Å | |
| O2P | HOP2 | sing | 0.97Å | 0.95Å | |
| O3P | HOP3 | sing | 0.97Å | 0.95Å | |
| O5' | C5' | sing | 1.43Å | 1.28Å | |
| C5' | C4' | sing | 1.53Å | 1.56Å | |
| C5' | H5'1 | sing | 1.09Å | 1.10Å | |
| C5' | H5'2 | sing | 1.09Å | 1.10Å | |
| C4' | O4' | sing | 1.43Å | 1.43Å | |
| C4' | C3' | sing | 1.53Å | 1.56Å | |
| C4' | H4' | sing | 1.09Å | 1.10Å | |
| O4' | HO'4 | sing | 0.97Å | 0.95Å | |
| C3' | O3' | sing | 1.43Å | 1.40Å | |
| C3' | C2' | sing | 1.53Å | 1.56Å | |
| C3' | H3' | sing | 1.09Å | 1.10Å | |
| O3' | HO'3 | sing | 0.97Å | 0.95Å | |
| C2' | O2' | sing | 1.43Å | 1.39Å | |
| C2' | C1' | sing | 1.53Å | 1.51Å | |
| C2' | H2' | sing | 1.09Å | 1.10Å | |
| O2' | HO'2 | sing | 0.97Å | 0.95Å | |
| C1' | NH | sing | 1.47Å | 1.43Å | |
| C1' | H1'1 | sing | 1.09Å | 1.10Å | |
| C1' | H1'2 | sing | 1.09Å | 1.10Å | |
| NH | C2 | sing | 1.39Å | 1.40Å | |
| NH | HNH | sing | 0.97Å | 1.00Å | |
| C1 | C2 | doub | 1.40Å | 1.46Å | Aromatic |
| C1 | C6 | sing | 1.40Å | 1.44Å | Aromatic |
| C1 | C7 | sing | 1.47Å | 1.50Å | |
| C2 | C3 | sing | 1.39Å | 1.45Å | Aromatic |
| C3 | C4 | doub | 1.38Å | 1.42Å | Aromatic |
| C3 | H3 | sing | 1.08Å | 1.08Å | |
| C4 | C5 | sing | 1.39Å | 1.44Å | Aromatic |
| C4 | H4 | sing | 1.08Å | 1.08Å | |
| C5 | C6 | doub | 1.38Å | 1.42Å | Aromatic |
| C5 | H5 | sing | 1.08Å | 1.08Å | |
| C6 | H6 | sing | 1.08Å | 1.08Å | |
| C7 | O71 | sing | 1.35Å | 1.23Å | |
| C7 | O72 | doub | 1.21Å | 1.23Å | |
| O71 | HO7 | sing | 0.97Å | 0.95Å |
Angles
| First atom | Second atom | Third atom | Angle (experimental model) | Angle (ideal model) |
| O1P | P | O2P | 108.0° | 109.5° |
| O1P | P | O3P | 113.8° | 109.5° |
| O1P | P | O5' | 102.6° | 109.5° |
| O2P | P | O3P | 111.8° | 109.5° |
| O2P | P | O5' | 112.4° | 109.4° |
| P | O2P | HOP2 | 109.5° | 106.8° |
| O3P | P | O5' | 107.9° | 109.5° |
| P | O3P | HOP3 | 109.5° | 106.8° |
| P | O5' | C5' | 129.4° | 106.8° |
| O5' | C5' | C4' | 120.8° | 109.5° |
| O5' | C5' | H5'1 | 103.2° | 109.5° |
| O5' | C5' | H5'2 | 105.9° | 109.5° |
| C4' | C5' | H5'1 | 103.2° | 109.4° |
| C4' | C5' | H5'2 | 105.8° | 109.5° |
| C5' | C4' | O4' | 110.6° | 109.4° |
| C5' | C4' | C3' | 111.9° | 109.5° |
| C5' | C4' | H4' | 106.7° | 109.5° |
| H5'1 | C5' | H5'2 | 118.8° | 109.5° |
| O4' | C4' | C3' | 108.4° | 109.5° |
| O4' | C4' | H4' | 110.3° | 109.5° |
| C4' | O4' | HO'4 | 109.5° | 106.8° |
| C3' | C4' | H4' | 109.0° | 109.5° |
| C4' | C3' | O3' | 104.8° | 109.5° |
| C4' | C3' | C2' | 114.5° | 109.5° |
| C4' | C3' | H3' | 108.3° | 109.4° |
| O3' | C3' | C2' | 106.1° | 109.5° |
| O3' | C3' | H3' | 116.4° | 109.5° |
| C3' | O3' | HO'3 | 109.5° | 106.8° |
| C2' | C3' | H3' | 107.1° | 109.5° |
| C3' | C2' | O2' | 116.0° | 109.4° |
| C3' | C2' | C1' | 114.2° | 109.5° |
| C3' | C2' | H2' | 100.0° | 109.5° |
| O2' | C2' | C1' | 105.7° | 109.5° |
| O2' | C2' | H2' | 109.5° | 109.4° |
| C2' | O2' | HO'2 | 109.5° | 106.8° |
| C1' | C2' | H2' | 111.5° | 109.5° |
| C2' | C1' | NH | 109.2° | 109.5° |
| C2' | C1' | H1'1 | 109.6° | 109.5° |
| C2' | C1' | H1'2 | 109.6° | 109.5° |
| NH | C1' | H1'1 | 109.7° | 109.5° |
| NH | C1' | H1'2 | 109.6° | 109.4° |
| C1' | NH | C2 | 120.8° | 120.0° |
| C1' | NH | HNH | 105.9° | 120.0° |
| H1'1 | C1' | H1'2 | 109.2° | 109.5° |
| C2 | NH | HNH | 105.8° | 120.0° |
| NH | C2 | C1 | 119.8° | 120.2° |
| NH | C2 | C3 | 118.9° | 120.2° |
| C2 | C1 | C6 | 117.3° | 119.6° |
| C2 | C1 | C7 | 124.7° | 120.2° |
| C1 | C2 | C3 | 121.3° | 119.6° |
| C6 | C1 | C7 | 117.9° | 120.2° |
| C1 | C6 | C5 | 121.2° | 119.9° |
| C1 | C6 | H6 | 119.4° | 120.0° |
| C1 | C7 | O71 | 123.1° | 120.0° |
| C1 | C7 | O72 | 119.2° | 120.0° |
| C2 | C3 | C4 | 119.2° | 120.0° |
| C2 | C3 | H3 | 120.4° | 120.0° |
| C4 | C3 | H3 | 120.4° | 120.0° |
| C3 | C4 | C5 | 120.3° | 120.5° |
| C3 | C4 | H4 | 119.8° | 119.8° |
| C5 | C4 | H4 | 119.9° | 119.8° |
| C4 | C5 | C6 | 120.7° | 120.4° |
| C4 | C5 | H5 | 119.7° | 119.8° |
| C6 | C5 | H5 | 119.7° | 119.8° |
| C5 | C6 | H6 | 119.4° | 120.0° |
| O71 | C7 | O72 | 117.7° | 120.0° |
| C7 | O71 | HO7 | 109.5° | 120.0° |
Dihedrals
| First atom | Second atom | Third atom | Fourth atom | Torsion (experimental model) | Torsion (ideal model) |
| O1P | P | O2P | O3P | 126.0° | 120.1° |
| O1P | P | O2P | O5' | 112.5° | 120.0° |
| O1P | P | O3P | O5' | 113.2° | 120.0° |
| O1P | P | O2P | HOP2 | 96.4° | 180.0° |
| O1P | P | O3P | HOP3 | 164.3° | 60.0° |
| O1P | P | O5' | C5' | 83.1° | 55.0° |
| O2P | P | O3P | O5' | 124.1° | 120.0° |
| O2P | P | O3P | HOP3 | 73.0° | 60.0° |
| O2P | P | O5' | C5' | 32.6° | 65.0° |
| O3P | P | O2P | HOP2 | 137.6° | 60.0° |
| O3P | P | O5' | C5' | 156.3° | 175.0° |
| O5' | P | O2P | HOP2 | 16.1° | 60.0° |
| O5' | P | O3P | HOP3 | 51.1° | 180.0° |
| P | O5' | C5' | C4' | 178.9° | 180.0° |
| P | O5' | C5' | H5'1 | 66.7° | 60.0° |
| P | O5' | C5' | H5'2 | 58.9° | 60.0° |
| O5' | C5' | C4' | H5'1 | 114.4° | 120.0° |
| O5' | C5' | C4' | H5'2 | 120.0° | 120.1° |
| O5' | C5' | H5'1 | H5'2 | 116.8° | 120.1° |
| O5' | C5' | C4' | O4' | 77.8° | 65.0° |
| O5' | C5' | C4' | C3' | 43.1° | 175.0° |
| O5' | C5' | C4' | H4' | 162.2° | 55.0° |
| C4' | C5' | H5'1 | H5'2 | 116.7° | 120.0° |
| C5' | C4' | O4' | C3' | 123.0° | 120.0° |
| C5' | C4' | O4' | H4' | 117.8° | 120.0° |
| C5' | C4' | C3' | H4' | 117.7° | 120.0° |
| C5' | C4' | O4' | HO'4 | 141.9° | 60.0° |
| C5' | C4' | C3' | O3' | 63.2° | 60.0° |
| C5' | C4' | C3' | C2' | 179.0° | 180.0° |
| C5' | C4' | C3' | H3' | 61.6° | 60.0° |
| H5'1 | C5' | C4' | O4' | 36.6° | 175.0° |
| H5'1 | C5' | C4' | C3' | 157.5° | 55.0° |
| H5'1 | C5' | C4' | H4' | 83.4° | 65.0° |
| H5'2 | C5' | C4' | O4' | 162.2° | 55.0° |
| H5'2 | C5' | C4' | C3' | 76.9° | 65.0° |
| H5'2 | C5' | C4' | H4' | 42.2° | 175.1° |
| O4' | C4' | C3' | H4' | 120.1° | 120.1° |
| O4' | C4' | C3' | O3' | 174.6° | 180.0° |
| O4' | C4' | C3' | C2' | 58.8° | 60.0° |
| O4' | C4' | C3' | H3' | 60.5° | 60.0° |
| C3' | C4' | O4' | HO'4 | 95.1° | 60.0° |
| C4' | C3' | O3' | C2' | 121.5° | 120.0° |
| C4' | C3' | O3' | H3' | 119.6° | 119.9° |
| C4' | C3' | C2' | H3' | 120.0° | 119.9° |
| C4' | C3' | O3' | HO'3 | 97.7° | 60.0° |
| C4' | C3' | C2' | O2' | 56.7° | 55.0° |
| C4' | C3' | C2' | C1' | 180.0° | 175.0° |
| C4' | C3' | C2' | H2' | 60.9° | 64.9° |
| H4' | C4' | O4' | HO'4 | 24.2° | 180.0° |
| H4' | C4' | C3' | O3' | 54.5° | 60.0° |
| H4' | C4' | C3' | C2' | 61.3° | 60.1° |
| H4' | C4' | C3' | H3' | 179.4° | 180.0° |
| O3' | C3' | C2' | H3' | 124.9° | 120.1° |
| O3' | C3' | C2' | O2' | 58.4° | 65.0° |
| O3' | C3' | C2' | C1' | 65.0° | 55.0° |
| O3' | C3' | C2' | H2' | 175.9° | 175.1° |
| C2' | C3' | O3' | HO'3 | 140.8° | 60.0° |
| C3' | C2' | O2' | C1' | 127.7° | 120.0° |
| C3' | C2' | O2' | H2' | 112.1° | 120.0° |
| C3' | C2' | C1' | H2' | 112.4° | 120.1° |
| C3' | C2' | O2' | HO'2 | 163.3° | 60.0° |
| C3' | C2' | C1' | NH | 51.5° | 175.1° |
| C3' | C2' | C1' | H1'1 | 171.6° | 55.0° |
| C3' | C2' | C1' | H1'2 | 68.5° | 65.0° |
| H3' | C3' | O3' | HO'3 | 21.9° | 180.0° |
| H3' | C3' | C2' | O2' | 176.7° | 174.9° |
| H3' | C3' | C2' | C1' | 60.0° | 65.0° |
| H3' | C3' | C2' | H2' | 59.1° | 55.0° |
| O2' | C2' | C1' | H2' | 118.9° | 120.0° |
| O2' | C2' | C1' | NH | 179.7° | 65.0° |
| O2' | C2' | C1' | H1'1 | 59.6° | 175.0° |
| O2' | C2' | C1' | H1'2 | 60.2° | 55.0° |
| C1' | C2' | O2' | HO'2 | 35.6° | 60.0° |
| C2' | C1' | NH | H1'1 | 120.1° | 120.0° |
| C2' | C1' | NH | H1'2 | 120.0° | 120.0° |
| C2' | C1' | H1'1 | H1'2 | 120.0° | 120.0° |
| C2' | C1' | NH | C2 | 153.5° | 180.0° |
| C2' | C1' | NH | HNH | 33.5° | 0.0° |
| H2' | C2' | O2' | HO'2 | 84.6° | 180.0° |
| H2' | C2' | C1' | NH | 60.9° | 55.0° |
| H2' | C2' | C1' | H1'1 | 59.2° | 65.1° |
| H2' | C2' | C1' | H1'2 | 179.1° | 174.9° |
| NH | C1' | H1'1 | H1'2 | 120.1° | 120.0° |
| C1' | NH | C2 | HNH | 120.0° | 180.0° |
| C1' | NH | C2 | C1 | 143.5° | 174.1° |
| C1' | NH | C2 | C3 | 36.7° | 5.7° |
| H1'1 | C1' | NH | C2 | 33.4° | 60.0° |
| H1'1 | C1' | NH | HNH | 86.6° | 120.0° |
| H1'2 | C1' | NH | C2 | 86.5° | 60.0° |
| H1'2 | C1' | NH | HNH | 153.5° | 120.0° |
| NH | C2 | C1 | C3 | 179.8° | 179.8° |
| NH | C2 | C1 | C6 | 179.8° | 179.7° |
| NH | C2 | C1 | C7 | 0.0° | 0.2° |
| NH | C2 | C3 | C4 | 179.9° | 180.0° |
| NH | C2 | C3 | H3 | 0.1° | 0.0° |
| HNH | NH | C2 | C1 | 96.5° | 6.0° |
| HNH | NH | C2 | C3 | 83.3° | 174.3° |
| C2 | C1 | C6 | C7 | 179.8° | 179.5° |
| C1 | C2 | C3 | C4 | 0.0° | 0.3° |
| C1 | C2 | C3 | H3 | 180.0° | 179.7° |
| C2 | C1 | C6 | C5 | 0.2° | 0.6° |
| C2 | C1 | C6 | H6 | 179.9° | 179.7° |
| C2 | C1 | C7 | O71 | 0.3° | 174.8° |
| C2 | C1 | C7 | O72 | 179.7° | 5.4° |
| C6 | C1 | C2 | C3 | 0.0° | 0.5° |
| C1 | C6 | C5 | C4 | 0.2° | 0.3° |
| C1 | C6 | C5 | H6 | 180.0° | 179.7° |
| C1 | C6 | C5 | H5 | 179.8° | 179.8° |
| C6 | C1 | C7 | O71 | 179.9° | 5.8° |
| C6 | C1 | C7 | O72 | 0.1° | 174.1° |
| C7 | C1 | C2 | C3 | 179.8° | 180.0° |
| C7 | C1 | C6 | C5 | 180.0° | 179.9° |
| C7 | C1 | C6 | H6 | 0.0° | 0.2° |
| C1 | C7 | O71 | O72 | 180.0° | 179.9° |
| C1 | C7 | O71 | HO7 | 180.0° | 179.9° |
| C2 | C3 | C4 | H3 | 180.0° | 180.0° |
| C2 | C3 | C4 | C5 | 0.0° | 0.0° |
| C2 | C3 | C4 | H4 | 180.0° | 179.9° |
| C3 | C4 | C5 | H4 | 180.0° | 179.9° |
| C3 | C4 | C5 | C6 | 0.2° | 0.1° |
| C3 | C4 | C5 | H5 | 179.9° | 179.9° |
| H3 | C3 | C4 | C5 | 180.0° | 180.0° |
| H3 | C3 | C4 | H4 | 0.0° | 0.0° |
| C4 | C5 | C6 | H5 | 180.0° | 179.9° |
| C4 | C5 | C6 | H6 | 179.8° | 179.9° |
| H4 | C4 | C5 | C6 | 179.8° | 180.0° |
| H4 | C4 | C5 | H5 | 0.1° | 0.1° |
| H5 | C5 | C6 | H6 | 0.2° | 0.0° |
| O72 | C7 | O71 | HO7 | 0.0° | 0.2° |
