English 日本語简体中文繁體中文 한국어

✖

Menu

RCSB PDB PDBe BMRB Adv. Search Search help

Summary Geometry Related PDB entries

0NX

Bonds

First atom	Second atom	Bond order type	Distance (experimental model)	Distance (ideal model)	Properties
C5	C4	doub	1.38Å	1.39Å	Aromatic
C5	C6	sing	1.38Å	1.39Å	Aromatic
C4	C3	sing	1.40Å	1.40Å	Aromatic
C6	C1	doub	1.38Å	1.40Å	Aromatic
C3	C7	sing	1.48Å	1.48Å
C3	C2	doub	1.40Å	1.40Å	Aromatic
C8	C7	doub	1.37Å	1.38Å	Aromatic
C8	C9	sing	1.41Å	1.40Å	Aromatic
C1	C2	sing	1.38Å	1.39Å	Aromatic
C7	O11	sing	1.34Å	1.36Å	Aromatic
O13	C12	sing	1.43Å	1.43Å
C12	C9	sing	1.51Å	1.50Å
C9	N10	doub	1.30Å	1.35Å	Aromatic
O11	N10	sing	1.21Å	1.42Å	Aromatic
O13	H1	sing	0.97Å	0.95Å
C12	H2	sing	1.09Å	1.10Å
C12	H3	sing	1.09Å	1.10Å
C8	H4	sing	1.08Å	1.08Å
C2	H5	sing	1.08Å	1.08Å
C4	H6	sing	1.08Å	1.08Å
C5	H7	sing	1.08Å	1.08Å
C6	H8	sing	1.08Å	1.08Å
C1	H9	sing	1.08Å	1.08Å

Angles

First atom	Second atom	Third atom	Angle (experimental model)	Angle (ideal model)
C4	C5	C6	118.8°	120.1°
C5	C4	C3	120.4°	119.9°
C5	C4	H6	119.8°	120.1°
C4	C5	H7	120.6°	119.9°
C5	C6	C1	120.9°	120.3°
C6	C5	H7	120.6°	119.9°
C5	C6	H8	119.6°	119.8°
C4	C3	C7	120.7°	120.1°
C4	C3	C2	121.0°	119.7°
C3	C4	H6	119.8°	120.0°
C6	C1	C2	120.6°	120.1°
C1	C6	H8	119.6°	119.9°
C6	C1	H9	119.7°	120.0°
C7	C3	C2	118.2°	120.1°
C3	C7	C8	128.9°	126.9°
C3	C7	O11	126.8°	126.9°
C3	C2	C1	118.3°	119.8°
C3	C2	H5	120.8°	120.1°
C7	C8	C9	109.2°	103.9°
C8	C7	O11	104.2°	106.2°
C7	C8	H4	125.4°	128.1°
C8	C9	C12	124.4°	126.7°
C8	C9	N10	110.1°	106.6°
C9	C8	H4	125.4°	128.0°
C1	C2	H5	120.9°	120.0°
C2	C1	H9	119.7°	119.9°
C7	O11	N10	113.0°	111.5°
O13	C12	C9	108.6°	109.5°
C12	O13	H1	109.5°	114.0°
O13	C12	H2	109.7°	109.4°
O13	C12	H3	109.7°	109.4°
C12	C9	N10	125.5°	126.7°
C9	C12	H2	109.7°	109.6°
C9	C12	H3	109.7°	109.5°
C9	N10	O11	103.4°	111.9°
H2	C12	H3	109.4°	109.5°

Dihedrals

First atom	Second atom	Third atom	Fourth atom	Torsion (experimental model)	Torsion (ideal model)
C4	C5	C6	H7	180.0°	179.9°
C5	C4	C3	H6	180.0°	180.0°
C4	C5	C6	C1	0.3°	0.2°
C5	C4	C3	C7	178.1°	180.0°
C5	C4	C3	C2	0.9°	0.3°
C4	C5	C6	H8	179.7°	180.0°
C6	C5	C4	C3	0.7°	0.0°
C5	C6	C1	H8	180.0°	179.8°
C5	C6	C1	C2	0.1°	0.2°
C6	C5	C4	H6	179.3°	180.0°
C5	C6	C1	H9	179.9°	180.0°
C4	C3	C7	C2	177.3°	179.7°
C4	C3	C7	C8	14.9°	0.3°
C4	C3	C2	C1	0.6°	0.3°
C4	C3	C7	O11	162.3°	179.9°
C4	C3	C2	H5	179.4°	179.7°
C3	C4	C5	H7	179.3°	180.0°
C6	C1	C2	C3	0.2°	0.0°
C6	C1	C2	H9	180.0°	179.8°
C6	C1	C2	H5	179.8°	180.0°
C1	C6	C5	H7	179.7°	179.7°
C3	C7	C8	O11	177.7°	179.9°
C3	C7	C8	C9	178.9°	180.0°
C7	C3	C2	C1	177.9°	180.0°
C3	C7	O11	N10	179.0°	179.9°
C3	C7	C8	H4	1.1°	0.0°
C7	C3	C2	H5	2.1°	0.0°
C7	C3	C4	H6	1.9°	0.0°
C2	C3	C7	C8	167.7°	180.0°
C3	C2	C1	H5	180.0°	180.0°
C2	C3	C7	O11	15.0°	0.2°
C2	C3	C4	H6	179.1°	179.7°
C3	C2	C1	H9	179.8°	179.7°
C7	C8	C9	H4	180.0°	180.0°
C7	C8	C9	C12	179.6°	179.9°
C7	C8	C9	N10	0.8°	0.2°
C8	C7	O11	N10	1.2°	0.0°
C9	C8	C7	O11	1.2°	0.2°
C8	C9	C12	O13	70.2°	0.4°
C8	C9	C12	N10	179.5°	179.6°
C8	C9	N10	O11	0.1°	0.2°
C8	C9	C12	H2	49.6°	119.7°
C8	C9	C12	H3	169.9°	120.3°
C2	C1	C6	H8	179.9°	180.0°
C7	O11	N10	C9	0.7°	0.1°
O11	C7	C8	H4	178.8°	179.8°
O13	C12	C9	H2	119.9°	120.0°
O13	C12	C9	H3	119.9°	119.9°
O13	C12	C9	N10	109.2°	180.0°
O13	C12	H2	H3	120.4°	119.9°
C12	C9	N10	O11	179.6°	179.9°
C9	C12	O13	H1	180.0°	180.0°
C9	C12	H2	H3	120.4°	120.0°
C12	C9	C8	H4	0.4°	0.1°
N10	C9	C12	H2	130.9°	59.9°
N10	C9	C12	H3	10.6°	60.1°
N10	C9	C8	H4	179.1°	179.8°
H1	O13	C12	H2	60.1°	59.9°
H1	O13	C12	H3	60.1°	60.0°
H5	C2	C1	H9	0.2°	0.3°
H6	C4	C5	H7	0.7°	0.0°
H7	C5	C6	H8	0.3°	0.0°
H8	C6	C1	H9	0.1°	0.3°

218853

PDB entries from 2024-04-24

PDB statistics

PDBj update info

Contact PDBj

numon